HHsearch alignment for GI: 254780624 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.47 E-value=2.1e-14 Score=112.99 Aligned_cols=157 Identities=18% Similarity=0.310 Sum_probs=110.1
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC------EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 99852064467997798602335577777664138863------278721332222111100000112222222222233
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRS------QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~------~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265)
T Consensus 6 ~I~~~I----p~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~R--------Gv~VIq~Dld 73 (205)
T TIGR02081 6 LILDLI----PPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVAR--------GVSVIQGDLD 73 (205)
T ss_pred HHHHHC----CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHC--------CCCEECCCCC
T ss_conf 898616----8887364101688789999997437898887120001023454459999862--------5201300600
Q ss_pred C-C-CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHH
Q ss_conf 3-4-5755446740366420132134432012100048521177630554455101123456531113321025428876
Q gi|254780624|r 133 T-L-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEE 210 (265)
Q Consensus 133 ~-l-p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~ 210 (265)
T Consensus 74 ~GL~~F~D~~FD~ViLsQTLQa~~Np~~iL~EmLRvg~---~aI---VSFPNFGyW~~R~~i~~~GRMPk-----Vt~~l 142 (205)
T TIGR02081 74 EGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGR---RAI---VSFPNFGYWRVRWSILTGGRMPK-----VTDEL 142 (205)
T ss_pred CCCCCCCCCCCCEEEECHHHHHHHCHHHHHHHHHHHCC---EEE---EECCCCCCHHCHHHEECCCCCCC-----CCCCC
T ss_conf 34011678876625421356642256899988776738---515---60588771101031110785887-----88787
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 8657899999689989999999975995
Q gi|254780624|r 211 PYQYLIESIRRFPNQQDFAAVISAAGFS 238 (265)
Q Consensus 211 ~Y~yL~~Si~~f~~~~el~~~l~~aGF~ 238 (265)
T Consensus 143 PY~WynTPNiHfcT~~DF~~L~~~~~~~ 170 (205)
T TIGR02081 143 PYEWYNTPNIHFCTLADFEELCEELNLR 170 (205)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 8888888875323377899999871965