HHsearch alignment for GI: 254780624 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.43  E-value=4.9e-13  Score=104.15  Aligned_cols=135  Identities=26%  Similarity=0.416  Sum_probs=96.0

Q ss_pred             CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-
Q ss_conf             7997798602335577777664138863278721332222111100000112222222222233345755446740366-
Q gi|254780624|r   69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA-  147 (265)
Q Consensus        69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s-  147 (265)
T Consensus        86 ~~~~~ilDlgtGSG~I~i~la~~~-~~~~v~~~Dis~~Al~~A~~N~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsNP  162 (251)
T TIGR03534        86 KGPLKVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAKRLGL-ENVRFLKSDWFE-PLPGGKFDLIVSNP  162 (251)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCHHH-CCCCCCCCEEEECC
T ss_conf             489869995567169999999967-997899998987999999999998099-826865131432-15689866899789


Q ss_pred             -EE-------E----CCC-------------HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf             -42-------0----132-------------1344320121000485211776305544551011234565311133210
Q gi|254780624|r  148 -FG-------I----RNM-------------PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG  202 (265)
Q Consensus       148 -f~-------l----~~~-------------~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g  202 (265)
T Consensus       163 PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~-Eig~----------------------  219 (251)
T TIGR03534       163 PYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLL-EIGY----------------------  219 (251)
T ss_pred             CCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECH----------------------
T ss_conf             98874566632860102672999717984699999999999985367988999-9683----------------------


Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE
Q ss_conf             25428876865789999968998999999997599537999855664
Q gi|254780624|r  203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV  249 (265)
Q Consensus       203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi  249 (265)
T Consensus       220 --------------------~q~~~v~~l~~~~gf~~i~~~kDl~g~  246 (251)
T TIGR03534       220 --------------------DQGEAVRALFEAAGFADVETRKDLAGK  246 (251)
T ss_pred             --------------------HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             --------------------789999999996899706885078989