HHsearch alignment for GI: 254780624 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.43 E-value=4.9e-13 Score=104.15 Aligned_cols=135 Identities=26% Similarity=0.416 Sum_probs=96.0
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-
Q ss_conf 7997798602335577777664138863278721332222111100000112222222222233345755446740366-
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA- 147 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s- 147 (265)
T Consensus 86 ~~~~~ilDlgtGSG~I~i~la~~~-~~~~v~~~Dis~~Al~~A~~N~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsNP 162 (251)
T TIGR03534 86 KGPLKVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAKRLGL-ENVRFLKSDWFE-PLPGGKFDLIVSNP 162 (251)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCHHH-CCCCCCCCEEEECC
T ss_conf 489869995567169999999967-997899998987999999999998099-826865131432-15689866899789
Q ss_pred -EE-------E----CCC-------------HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf -42-------0----132-------------1344320121000485211776305544551011234565311133210
Q gi|254780624|r 148 -FG-------I----RNM-------------PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265)
Q Consensus 148 -f~-------l----~~~-------------~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265)
T Consensus 163 PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~-Eig~---------------------- 219 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLL-EIGY---------------------- 219 (251)
T ss_pred CCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECH----------------------
T ss_conf 98874566632860102672999717984699999999999985367988999-9683----------------------
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE
Q ss_conf 25428876865789999968998999999997599537999855664
Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV 249 (265)
Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi 249 (265)
T Consensus 220 --------------------~q~~~v~~l~~~~gf~~i~~~kDl~g~ 246 (251)
T TIGR03534 220 --------------------DQGEAVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred --------------------HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf --------------------789999999996899706885078989