Query gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 265
No_of_seqs 183 out of 10472
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 21:21:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780624.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01934 MenG_MenH_UbiE ubiqu 100.0 0 0 537.0 11.8 228 30-257 1-242 (242)
2 PRK00216 ubiE ubiquinone/menaq 100.0 0 0 507.0 19.4 239 18-258 1-239 (239)
3 pfam01209 Ubie_methyltran ubiE 100.0 0 0 488.0 18.3 230 25-257 4-233 (233)
4 COG2226 UbiE Methylase involve 100.0 0 0 450.0 16.4 237 18-258 1-238 (238)
5 KOG1540 consensus 100.0 0 0 450.8 15.3 250 7-258 39-296 (296)
6 PRK05785 hypothetical protein; 100.0 0 0 416.6 15.5 217 25-258 5-224 (225)
7 TIGR02752 MenG_heptapren 2-hep 100.0 0 0 340.0 10.2 230 25-257 2-231 (231)
8 PRK08317 hypothetical protein; 100.0 4.6E-33 1.2E-37 233.2 9.9 168 54-247 5-179 (241)
9 PRK11873 arsM arsenite S-adeno 100.0 1.3E-31 3.3E-36 223.9 8.9 167 70-259 73-258 (258)
10 PRK10258 biotin biosynthesis p 100.0 3.3E-30 8.5E-35 214.8 11.4 143 28-189 7-149 (251)
11 PRK05134 3-demethylubiquinone- 100.0 2.8E-29 7.2E-34 208.8 10.9 201 33-259 11-233 (233)
12 PTZ00098 phosphoethanolamine N 100.0 1.1E-28 2.7E-33 205.0 10.2 171 46-246 31-204 (263)
13 TIGR02072 BioC biotin biosynth 99.9 8.2E-28 2.1E-32 199.4 6.9 189 34-245 2-199 (272)
14 smart00828 PKS_MT Methyltransf 99.9 7.1E-28 1.8E-32 199.8 5.6 106 73-180 2-107 (224)
15 TIGR01983 UbiG ubiquinone bios 99.9 3.1E-26 8E-31 189.2 7.1 158 71-248 85-258 (275)
16 PRK01683 trans-aconitate 2-met 99.9 1.2E-23 3.1E-28 172.5 11.1 172 38-241 6-177 (252)
17 PRK11036 putative metallothion 99.9 5.1E-23 1.3E-27 168.5 7.7 194 33-243 5-206 (256)
18 pfam02353 CMAS Cyclopropane-fa 99.9 1.2E-22 3.1E-27 166.0 9.0 188 35-245 8-218 (273)
19 PRK07580 Mg-protoporphyrin IX 99.9 6.6E-22 1.7E-26 161.3 10.2 198 22-247 5-217 (230)
20 KOG4300 consensus 99.9 5.5E-22 1.4E-26 161.8 7.7 187 31-255 50-243 (252)
21 COG2230 Cfa Cyclopropane fatty 99.8 1.8E-21 4.7E-26 158.4 7.2 185 33-244 16-223 (283)
22 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.3E-21 5.8E-26 157.9 5.5 160 70-247 59-218 (243)
23 KOG1270 consensus 99.8 1.1E-20 2.9E-25 153.3 5.1 197 29-246 38-251 (282)
24 pfam08241 Methyltransf_11 Meth 99.8 4.8E-21 1.2E-25 155.7 3.0 95 75-175 1-95 (95)
25 pfam08242 Methyltransf_12 Meth 99.8 2.8E-20 7.1E-25 150.9 1.9 98 75-173 1-98 (98)
26 TIGR02021 BchM-ChlM magnesium 99.8 1.7E-19 4.4E-24 145.8 4.7 195 28-248 3-215 (224)
27 cd02440 AdoMet_MTases S-adenos 99.8 2.3E-19 5.9E-24 144.9 3.6 101 73-176 1-103 (107)
28 pfam07021 MetW Methionine bios 99.7 4.4E-18 1.1E-22 136.7 3.2 155 69-245 12-168 (193)
29 PRK06202 hypothetical protein; 99.7 1.3E-16 3.2E-21 127.3 9.3 182 42-243 35-221 (233)
30 PRK11705 cyclopropane fatty ac 99.6 3.8E-16 9.8E-21 124.2 5.8 134 37-181 116-271 (383)
31 PRK11088 rrmA 23S rRNA methylt 99.6 9.1E-16 2.3E-20 121.8 6.5 107 58-177 72-181 (272)
32 pfam05175 MTS Methyltransferas 99.6 7.7E-16 2E-20 122.2 5.2 114 58-176 21-139 (170)
33 COG4976 Predicted methyltransf 99.6 5.1E-15 1.3E-19 116.9 5.3 198 20-259 77-287 (287)
34 PRK11207 tellurite resistance 99.5 8.8E-15 2.2E-19 115.4 6.1 113 59-178 21-135 (198)
35 PRK00377 cbiT cobalt-precorrin 99.5 5.4E-14 1.4E-18 110.3 9.9 115 57-176 29-144 (198)
36 pfam05148 Methyltransf_8 Hypot 99.5 3E-13 7.6E-18 105.6 13.0 142 58-262 56-197 (214)
37 pfam08003 Methyltransf_9 Prote 99.5 7.6E-14 1.9E-18 109.4 8.4 170 52-247 94-270 (315)
38 PRK09328 N5-glutamine S-adenos 99.5 1.5E-13 3.8E-18 107.5 9.8 141 70-256 109-274 (277)
39 TIGR03533 L3_gln_methyl protei 99.5 7.6E-14 1.9E-18 109.4 6.9 137 70-252 121-282 (284)
40 TIGR00740 TIGR00740 methyltran 99.5 2.2E-14 5.6E-19 112.8 3.8 202 30-241 21-232 (247)
41 TIGR02081 metW methionine bios 99.5 2.1E-14 5.3E-19 113.0 3.4 157 59-238 6-170 (205)
42 KOG3010 consensus 99.5 3.8E-14 9.8E-19 111.3 4.5 99 73-177 36-137 (261)
43 KOG2361 consensus 99.5 1.4E-13 3.6E-18 107.6 6.2 188 34-241 31-234 (264)
44 PRK06922 hypothetical protein; 99.4 3.2E-13 8.2E-18 105.4 8.0 105 70-177 420-539 (679)
45 PRK08287 cobalt-precorrin-6Y C 99.4 1.4E-12 3.6E-17 101.2 11.0 110 58-176 20-129 (186)
46 TIGR03534 RF_mod_HemK protein- 99.4 4.9E-13 1.3E-17 104.1 7.7 135 69-249 86-246 (251)
47 COG4106 Tam Trans-aconitate me 99.4 7.7E-14 2E-18 109.4 3.5 109 58-176 20-128 (257)
48 pfam01135 PCMT Protein-L-isoas 99.4 2.7E-13 6.8E-18 105.9 5.9 110 58-176 63-172 (205)
49 KOG1541 consensus 99.4 1.6E-13 4.1E-18 107.3 4.7 131 35-176 17-159 (270)
50 PRK01544 bifunctional N5-gluta 99.4 2.2E-13 5.5E-18 106.4 5.0 119 67-189 132-277 (503)
51 COG2242 CobL Precorrin-6B meth 99.4 1.4E-12 3.7E-17 101.1 9.0 108 59-175 25-133 (187)
52 KOG3045 consensus 99.4 2.3E-12 5.8E-17 99.9 9.5 138 58-260 169-306 (325)
53 PRK13942 protein-L-isoaspartat 99.4 4.3E-13 1.1E-17 104.5 5.7 110 58-176 66-175 (214)
54 PRK11805 N5-glutamine S-adenos 99.4 3.1E-13 8E-18 105.4 4.7 108 70-180 133-265 (307)
55 pfam03291 Pox_MCEL mRNA cappin 99.4 3.9E-13 1E-17 104.8 4.9 165 69-246 62-268 (327)
56 COG2519 GCD14 tRNA(1-methylade 99.4 1.4E-12 3.4E-17 101.3 6.7 108 60-175 86-193 (256)
57 PRK13944 protein-L-isoaspartat 99.4 1E-12 2.6E-17 102.2 5.9 110 58-175 62-171 (205)
58 COG4123 Predicted O-methyltran 99.3 1.3E-12 3.4E-17 101.3 4.8 123 48-176 27-169 (248)
59 pfam05401 NodS Nodulation prot 99.3 4.8E-13 1.2E-17 104.2 2.0 136 38-184 3-150 (201)
60 PRK00517 prmA ribosomal protei 99.3 3E-11 7.6E-16 92.7 10.6 154 47-253 138-294 (298)
61 pfam03848 TehB Tellurite resis 99.3 3.2E-12 8.1E-17 98.9 4.9 101 72-178 32-134 (192)
62 PRK07402 precorrin-6B methylas 99.3 3.8E-12 9.6E-17 98.5 5.2 110 58-176 30-141 (196)
63 KOG1975 consensus 99.3 2.1E-12 5.4E-17 100.1 3.7 175 55-245 104-318 (389)
64 pfam08704 GCD14 tRNA methyltra 99.3 2E-11 5.1E-16 93.8 8.5 110 59-175 93-206 (309)
65 COG2521 Predicted archaeal met 99.3 1.3E-11 3.4E-16 94.9 7.6 160 55-251 119-284 (287)
66 TIGR02469 CbiT precorrin-6Y C5 99.3 8.8E-12 2.2E-16 96.1 5.8 114 58-175 9-131 (135)
67 KOG1269 consensus 99.2 2.1E-12 5.3E-17 100.1 2.1 118 60-179 100-217 (364)
68 KOG2940 consensus 99.2 8E-12 2E-16 96.4 4.8 98 73-175 75-172 (325)
69 PRK00312 pcm protein-L-isoaspa 99.2 1.1E-11 2.9E-16 95.4 5.4 107 58-176 68-174 (213)
70 KOG1331 consensus 99.2 7.2E-12 1.8E-16 96.6 4.4 132 24-176 8-142 (293)
71 PRK13943 protein-L-isoaspartat 99.2 1.5E-11 3.8E-16 94.6 6.0 109 58-175 65-173 (317)
72 KOG1271 consensus 99.2 3E-11 7.5E-16 92.7 7.4 136 69-248 65-212 (227)
73 PRK09329 N5-glutamine S-adenos 99.2 4.9E-11 1.3E-15 91.3 8.4 150 60-259 100-275 (285)
74 COG2890 HemK Methylase of poly 99.2 1E-10 2.7E-15 89.2 9.1 140 73-259 113-278 (280)
75 pfam01170 UPF0020 Putative RNA 99.2 1.8E-11 4.5E-16 94.1 4.8 107 59-168 19-133 (171)
76 pfam06325 PrmA Ribosomal prote 99.2 3.2E-11 8.1E-16 92.5 5.5 149 17-175 88-256 (294)
77 COG2264 PrmA Ribosomal protein 99.1 6.7E-11 1.7E-15 90.4 5.5 152 51-253 144-296 (300)
78 PRK09489 rsmC 16S ribosomal RN 99.1 8.9E-11 2.3E-15 89.6 5.6 112 58-176 186-302 (342)
79 TIGR00452 TIGR00452 methyltran 99.1 7.8E-11 2E-15 90.0 5.1 172 52-246 100-277 (316)
80 pfam01596 Methyltransf_3 O-met 99.1 6.4E-11 1.6E-15 90.5 4.2 102 71-175 45-152 (204)
81 TIGR02716 C20_methyl_CrtF C-20 99.1 4.7E-10 1.2E-14 85.0 6.8 169 52-242 129-304 (306)
82 pfam00891 Methyltransf_2 O-met 99.0 1.4E-09 3.5E-14 81.9 8.9 104 69-184 100-205 (239)
83 pfam02390 Methyltransf_4 Putat 99.0 1.2E-10 3E-15 88.8 3.0 98 73-176 23-136 (199)
84 COG2518 Pcm Protein-L-isoaspar 99.0 4E-10 1E-14 85.4 5.7 108 58-177 62-169 (209)
85 COG1041 Predicted DNA modifica 99.0 3.4E-10 8.7E-15 85.8 5.3 118 53-175 182-308 (347)
86 pfam12147 Hydrolase_5 Putative 99.0 1.2E-09 3E-14 82.4 8.0 169 68-257 133-311 (311)
87 pfam05219 DREV DREV methyltran 99.0 6.1E-10 1.5E-14 84.2 6.4 146 70-245 94-241 (265)
88 PRK00121 trmB tRNA (guanine-N( 99.0 1.5E-10 3.9E-15 88.1 3.0 98 72-176 56-169 (229)
89 pfam05891 Hydroxy-O-Methy Puta 99.0 7.2E-10 1.8E-14 83.8 6.1 185 28-243 7-199 (217)
90 KOG3178 consensus 99.0 5E-09 1.3E-13 78.3 10.0 169 43-244 152-330 (342)
91 COG4122 Predicted O-methyltran 99.0 3.4E-10 8.6E-15 85.9 4.0 105 70-177 59-166 (219)
92 COG2813 RsmC 16S RNA G1207 met 99.0 6.3E-10 1.6E-14 84.1 5.3 113 58-176 148-265 (300)
93 COG0220 Predicted S-adenosylme 99.0 7.2E-10 1.8E-14 83.8 4.6 96 73-175 51-162 (227)
94 pfam02475 Met_10 Met-10+ like- 98.9 7.7E-10 2E-14 83.6 4.3 108 57-174 91-198 (199)
95 PRK12335 tellurite resistance 98.9 1E-09 2.7E-14 82.7 4.5 108 71-184 123-233 (289)
96 TIGR00406 prmA ribosomal prote 98.9 3E-09 7.7E-14 79.7 5.6 118 51-175 176-298 (330)
97 KOG1499 consensus 98.9 2.3E-09 5.8E-14 80.6 4.0 102 70-174 60-164 (346)
98 PRK10901 16S rRNA methyltransf 98.9 3.3E-09 8.3E-14 79.5 4.8 112 59-175 236-371 (428)
99 TIGR00091 TIGR00091 tRNA (guan 98.9 1.8E-09 4.7E-14 81.1 3.5 98 72-175 21-145 (216)
100 pfam09243 Rsm22 Mitochondrial 98.8 2.6E-08 6.7E-13 73.7 7.4 110 71-183 35-146 (275)
101 TIGR00477 tehB tellurite resis 98.8 3.6E-09 9.3E-14 79.2 2.6 117 59-185 67-186 (239)
102 KOG2904 consensus 98.7 2.7E-08 6.8E-13 73.7 6.1 105 70-175 148-283 (328)
103 pfam09445 Methyltransf_15 RNA 98.7 5.3E-09 1.4E-13 78.2 2.5 73 72-147 2-78 (165)
104 TIGR00755 ksgA dimethyladenosi 98.7 1.8E-08 4.5E-13 74.8 5.1 88 49-142 6-99 (277)
105 PRK00107 gidB glucose-inhibite 98.7 3.8E-08 9.6E-13 72.7 6.7 119 51-176 46-168 (216)
106 TIGR00080 pimt protein-L-isoas 98.7 1.7E-08 4.4E-13 74.9 4.5 111 58-175 70-185 (228)
107 TIGR03438 probable methyltrans 98.7 2.7E-07 6.8E-12 67.2 10.3 176 68-244 61-290 (301)
108 KOG2899 consensus 98.7 3.1E-08 8E-13 73.2 5.4 158 63-243 51-256 (288)
109 PRK11933 yebU rRNA (cytosine-C 98.7 2E-08 5.1E-13 74.5 4.1 111 65-181 110-243 (471)
110 TIGR00537 hemK_rel_arch methyl 98.6 5.2E-08 1.3E-12 71.8 5.2 110 62-177 14-144 (183)
111 pfam03141 DUF248 Putative meth 98.6 1.8E-08 4.5E-13 74.8 2.8 93 72-175 119-217 (506)
112 smart00138 MeTrc Methyltransfe 98.6 9E-08 2.3E-12 70.3 6.3 107 69-175 98-240 (264)
113 pfam06080 DUF938 Protein of un 98.6 1.9E-07 4.9E-12 68.1 7.9 170 59-249 13-194 (201)
114 PRK11188 rrmJ 23S rRNA methylt 98.6 5.3E-08 1.3E-12 71.7 5.0 95 69-175 50-163 (209)
115 pfam01189 Nol1_Nop2_Fmu NOL1/N 98.6 5.9E-08 1.5E-12 71.4 5.3 113 60-175 76-212 (277)
116 KOG1661 consensus 98.6 2.3E-08 6E-13 74.0 2.7 113 58-176 70-192 (237)
117 COG0500 SmtA SAM-dependent met 98.6 4.7E-08 1.2E-12 72.1 4.2 104 74-180 52-158 (257)
118 pfam02384 N6_Mtase N-6 DNA Met 98.6 5.2E-08 1.3E-12 71.8 4.0 121 54-176 32-183 (312)
119 PRK04457 spermidine synthase; 98.6 8.8E-08 2.2E-12 70.3 4.9 121 58-180 55-180 (262)
120 TIGR00563 rsmB ribosomal RNA s 98.5 8.5E-08 2.2E-12 70.4 4.2 118 59-181 262-409 (487)
121 pfam02527 GidB rRNA small subu 98.5 1.8E-07 4.5E-12 68.4 5.7 119 51-176 26-147 (184)
122 COG0357 GidB Predicted S-adeno 98.5 2.2E-07 5.7E-12 67.7 6.2 119 51-175 45-166 (215)
123 pfam01739 CheR CheR methyltran 98.5 1E-07 2.6E-12 69.9 4.4 109 67-176 27-172 (194)
124 pfam07942 N2227 N2227-like pro 98.5 1.3E-06 3.3E-11 62.8 9.4 159 69-259 56-268 (268)
125 TIGR00479 rumA 23S rRNA (uraci 98.5 9E-08 2.3E-12 70.3 3.4 104 57-175 283-396 (434)
126 COG2263 Predicted RNA methylas 98.5 8.9E-08 2.3E-12 70.3 3.3 70 70-146 45-114 (198)
127 COG1352 CheR Methylase of chem 98.5 3.3E-07 8.4E-12 66.6 6.1 120 57-176 82-240 (268)
128 COG0144 Sun tRNA and rRNA cyto 98.5 2.1E-07 5.3E-12 67.9 4.9 115 61-181 149-289 (355)
129 TIGR00438 rrmJ ribosomal RNA l 98.5 1.5E-07 3.9E-12 68.8 4.1 97 69-175 31-148 (192)
130 KOG1663 consensus 98.5 1.6E-07 4.1E-12 68.6 4.1 101 72-175 75-181 (237)
131 COG1092 Predicted SAM-dependen 98.5 1.1E-07 2.9E-12 69.6 3.3 104 71-176 218-335 (393)
132 pfam01234 NNMT_PNMT_TEMT NNMT/ 98.4 1.6E-06 4.1E-11 62.2 8.9 156 58-243 44-238 (261)
133 pfam10294 Methyltransf_16 Puta 98.4 3.3E-07 8.4E-12 66.6 4.7 105 70-176 44-153 (171)
134 PRK05031 tRNA (uracil-5-)-meth 98.4 2.8E-07 7.1E-12 67.1 3.9 70 58-134 198-267 (363)
135 PRK10611 chemotaxis methyltran 98.4 4E-07 1E-11 66.1 4.4 107 69-175 114-260 (287)
136 PRK03522 rumB 23S rRNA methylu 98.4 2.7E-07 6.9E-12 67.2 3.5 81 59-145 224-305 (375)
137 PTZ00338 dimethyladenosine tra 98.4 6.1E-07 1.5E-11 64.9 5.0 90 49-145 15-108 (296)
138 KOG1500 consensus 98.4 1.6E-06 4.1E-11 62.2 7.1 99 71-174 178-279 (517)
139 COG3963 Phospholipid N-methylt 98.4 6.7E-07 1.7E-11 64.6 5.2 114 58-179 38-158 (194)
140 COG0421 SpeE Spermidine syntha 98.4 6.6E-07 1.7E-11 64.7 5.1 103 68-176 74-189 (282)
141 COG2520 Predicted methyltransf 98.3 5.4E-07 1.4E-11 65.3 4.1 114 57-180 179-292 (341)
142 pfam05724 TPMT Thiopurine S-me 98.3 1.1E-06 2.8E-11 63.2 5.4 105 69-176 21-139 (203)
143 COG0030 KsgA Dimethyladenosine 98.3 9.1E-07 2.3E-11 63.8 5.0 90 49-146 7-101 (259)
144 PRK03612 spermidine synthase; 98.3 7.4E-07 1.9E-11 64.4 4.3 114 58-177 281-411 (516)
145 PRK00811 spermidine synthase; 98.3 7.5E-07 1.9E-11 64.3 4.1 103 68-176 76-192 (283)
146 TIGR00138 gidB methyltransfera 98.3 1.3E-06 3.4E-11 62.7 5.3 118 52-176 23-152 (197)
147 pfam01564 Spermine_synth Sperm 98.3 9.6E-07 2.4E-11 63.6 4.4 103 68-176 73-188 (240)
148 pfam05958 tRNA_U5-meth_tr tRNA 98.3 8.1E-07 2.1E-11 64.1 4.0 70 58-134 188-257 (353)
149 PRK10909 rsmD 16S rRNA m(2)G96 98.3 1E-06 2.6E-11 63.4 4.3 115 57-179 40-159 (198)
150 TIGR03439 methyl_EasF probable 98.2 2.3E-05 5.9E-10 54.7 10.1 176 68-244 74-309 (319)
151 KOG3420 consensus 98.2 5.3E-07 1.3E-11 65.3 1.4 73 70-146 48-120 (185)
152 TIGR03587 Pse_Me-ase pseudamin 98.2 5.1E-06 1.3E-10 58.9 6.3 103 70-182 43-147 (204)
153 KOG2915 consensus 98.2 3.1E-06 7.8E-11 60.4 5.2 113 58-179 95-210 (314)
154 TIGR00417 speE spermidine synt 98.2 1.7E-06 4.3E-11 62.1 3.7 157 58-258 62-244 (284)
155 pfam10672 Methyltrans_SAM S-ad 98.2 2.3E-06 5.9E-11 61.2 4.4 104 70-175 123-236 (286)
156 KOG0820 consensus 98.2 2.2E-06 5.5E-11 61.3 4.2 91 49-146 35-129 (315)
157 pfam01728 FtsJ FtsJ-like methy 98.2 3.1E-06 7.8E-11 60.4 4.9 93 71-176 22-132 (176)
158 COG0116 Predicted N6-adenine-s 98.2 1.4E-06 3.6E-11 62.6 3.1 80 72-151 193-312 (381)
159 PRK01581 speE spermidine synth 98.2 2.8E-06 7E-11 60.7 4.5 124 47-177 117-257 (363)
160 PRK13168 rumA 23S rRNA 5-methy 98.1 1.3E-06 3.3E-11 62.8 2.8 81 59-145 285-369 (440)
161 COG2265 TrmA SAM-dependent met 98.1 1.3E-06 3.2E-11 62.9 2.7 82 58-145 283-367 (432)
162 pfam08123 DOT1 Histone methyla 98.1 4.2E-06 1.1E-10 59.5 5.3 118 58-181 32-162 (205)
163 COG0742 N6-adenine-specific me 98.1 5.5E-06 1.4E-10 58.7 5.1 116 57-175 30-152 (187)
164 COG0293 FtsJ 23S rRNA methylas 98.1 9.5E-06 2.4E-10 57.2 6.2 97 70-178 45-160 (205)
165 PRK01544 bifunctional N5-gluta 98.1 4E-06 1E-10 59.6 3.8 100 69-175 343-457 (503)
166 smart00650 rADc Ribosomal RNA 98.0 4.4E-06 1.1E-10 59.4 3.9 79 58-144 3-81 (169)
167 pfam00398 RrnaAD Ribosomal RNA 98.0 9.7E-06 2.5E-10 57.2 5.1 75 57-139 19-93 (258)
168 PTZ00146 fibrillarin; Provisio 98.0 4.1E-05 1E-09 53.1 8.2 149 67-260 132-293 (296)
169 PRK00274 ksgA dimethyladenosin 98.0 6.9E-06 1.8E-10 58.1 3.9 78 49-138 16-97 (267)
170 pfam03602 Cons_hypoth95 Conser 98.0 1.1E-05 2.9E-10 56.7 4.9 113 57-175 29-149 (181)
171 pfam01269 Fibrillarin Fibrilla 98.0 7.2E-05 1.8E-09 51.5 8.8 96 68-176 71-177 (229)
172 KOG3191 consensus 97.9 0.00013 3.4E-09 49.8 9.9 197 27-257 8-208 (209)
173 KOG2187 consensus 97.9 3.9E-06 1E-10 59.7 2.0 61 70-134 383-443 (534)
174 PRK04266 fibrillarin; Provisio 97.9 4.4E-05 1.1E-09 52.9 6.8 136 68-246 70-212 (226)
175 pfam05971 Methyltransf_10 Prot 97.9 1.5E-05 3.9E-10 55.9 4.2 182 55-256 50-250 (254)
176 KOG3987 consensus 97.9 2.8E-06 7E-11 60.7 0.1 94 69-175 111-205 (288)
177 KOG1122 consensus 97.8 1E-05 2.6E-10 57.1 2.2 112 62-180 235-371 (460)
178 pfam11968 DUF3321 Protein of u 97.8 0.00014 3.5E-09 49.7 7.5 123 71-243 53-181 (220)
179 pfam04672 DUF574 Protein of un 97.8 4.6E-05 1.2E-09 52.8 5.0 165 53-241 53-234 (268)
180 pfam04816 DUF633 Family of unk 97.7 0.00012 3.2E-09 50.0 6.9 73 74-147 1-73 (204)
181 KOG2352 consensus 97.7 5.4E-05 1.4E-09 52.3 4.8 114 59-179 40-163 (482)
182 TIGR00446 nop2p NOL1/NOP2/sun 97.7 3.5E-05 9E-10 53.5 3.8 113 65-181 72-214 (284)
183 COG0275 Predicted S-adenosylme 97.7 5.2E-05 1.3E-09 52.5 4.4 86 57-146 12-102 (314)
184 PRK13255 thiopurine S-methyltr 97.7 8.5E-05 2.2E-09 51.1 5.3 104 69-176 36-154 (218)
185 pfam03059 NAS Nicotianamine sy 97.6 5.9E-05 1.5E-09 52.1 4.0 150 70-260 121-275 (277)
186 KOG1709 consensus 97.6 0.00017 4.4E-09 49.1 6.2 129 42-175 72-204 (271)
187 KOG2730 consensus 97.6 3.2E-05 8.2E-10 53.8 1.9 71 71-144 95-169 (263)
188 COG1189 Predicted rRNA methyla 97.6 0.00086 2.2E-08 44.6 9.2 177 47-259 59-244 (245)
189 COG4627 Uncharacterized protei 97.5 3E-05 7.7E-10 54.0 1.3 66 123-191 30-97 (185)
190 COG4798 Predicted methyltransf 97.4 0.00021 5.3E-09 48.6 4.7 146 61-238 41-199 (238)
191 pfam02005 TRM N2,N2-dimethylgu 97.4 0.00015 3.7E-09 49.6 3.8 106 66-176 45-152 (375)
192 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.00012 3E-09 50.1 3.1 105 72-176 196-350 (716)
193 PRK00536 speE spermidine synth 97.4 0.00017 4.4E-09 49.1 3.8 106 59-175 60-169 (262)
194 pfam06962 rRNA_methylase Putat 97.4 7.2E-05 1.8E-09 51.5 1.6 79 97-177 1-92 (140)
195 pfam03492 Methyltransf_7 SAM d 97.3 0.0032 8.3E-08 40.9 9.8 172 68-243 14-248 (331)
196 pfam05185 PRMT5 PRMT5 arginine 97.3 0.00073 1.9E-08 45.1 6.3 101 72-174 188-294 (447)
197 PRK11727 putative SAM-dependen 97.3 0.00025 6.4E-09 48.1 3.6 172 68-257 115-311 (326)
198 COG4262 Predicted spermidine s 97.3 0.00033 8.5E-09 47.2 4.1 107 71-183 290-416 (508)
199 COG1064 AdhP Zn-dependent alco 97.2 0.00031 7.8E-09 47.5 3.1 103 59-178 157-260 (339)
200 PRK09880 L-idonate 5-dehydroge 97.1 0.0008 2E-08 44.8 4.8 107 60-179 161-268 (343)
201 PHA02056 putative methyltransf 97.1 0.00041 1E-08 46.7 3.1 71 68-146 62-132 (279)
202 PRK00050 mraW S-adenosyl-methy 97.0 0.00074 1.9E-08 45.0 3.8 100 58-161 13-117 (309)
203 pfam01795 Methyltransf_5 MraW 97.0 0.00097 2.5E-08 44.3 4.2 100 58-161 10-116 (310)
204 KOG1099 consensus 96.9 0.001 2.6E-08 44.1 3.8 119 31-175 9-161 (294)
205 COG0286 HsdM Type I restrictio 96.9 0.0017 4.4E-08 42.7 4.8 117 58-176 176-325 (489)
206 PRK04338 N(2),N(2)-dimethylgua 96.8 0.0012 3.2E-08 43.6 3.7 99 71-176 52-152 (376)
207 TIGR03451 mycoS_dep_FDH mycoth 96.8 0.0035 8.9E-08 40.7 5.9 112 59-183 167-282 (358)
208 KOG2798 consensus 96.8 0.0024 6.2E-08 41.7 5.0 144 71-243 151-336 (369)
209 COG5459 Predicted rRNA methyla 96.8 0.00058 1.5E-08 45.7 1.6 109 72-183 115-231 (484)
210 KOG3115 consensus 96.7 0.0013 3.3E-08 43.4 2.7 98 73-176 63-182 (249)
211 PRK13341 recombination factor 96.6 0.065 1.6E-06 32.5 12.2 168 58-243 482-658 (726)
212 PRK10083 putative dehydrogenas 96.6 0.0051 1.3E-07 39.6 5.3 109 59-180 151-262 (339)
213 COG2384 Predicted SAM-dependen 96.5 0.003 7.6E-08 41.1 3.6 75 71-147 17-92 (226)
214 TIGR02143 trmA_only tRNA (urac 96.4 0.00071 1.8E-08 45.1 -0.1 59 73-135 206-264 (361)
215 KOG1253 consensus 96.4 0.00085 2.2E-08 44.6 0.2 103 69-176 108-215 (525)
216 KOG1501 consensus 96.3 0.0062 1.6E-07 39.1 4.6 64 71-136 67-130 (636)
217 COG4076 Predicted RNA methylas 96.3 0.0027 6.8E-08 41.4 2.6 98 72-176 34-134 (252)
218 KOG3201 consensus 96.2 0.00087 2.2E-08 44.6 -0.2 113 72-189 31-150 (201)
219 COG1889 NOP1 Fibrillarin-like 96.2 0.0085 2.2E-07 38.2 4.7 115 53-176 51-179 (231)
220 PRK11783 rlmL 23S rRNA m(2)G24 96.2 0.0063 1.6E-07 39.0 3.9 118 53-180 540-670 (716)
221 TIGR03201 dearomat_had 6-hydro 96.2 0.0058 1.5E-07 39.3 3.6 105 61-179 159-274 (349)
222 PRK10309 galactitol-1-phosphat 96.2 0.012 3.1E-07 37.2 5.3 106 60-177 152-260 (347)
223 TIGR00478 tly hemolysin A; Int 96.1 0.0076 1.9E-07 38.5 4.2 126 47-187 57-188 (240)
224 TIGR00536 hemK_fam methyltrans 96.1 0.0043 1.1E-07 40.1 2.9 87 60-146 116-205 (311)
225 TIGR01177 TIGR01177 conserved 96.1 0.0059 1.5E-07 39.2 3.5 119 54-177 189-322 (358)
226 PRK13771 putative alcohol dehy 96.1 0.038 9.6E-07 34.0 7.4 101 59-177 153-255 (332)
227 KOG2539 consensus 96.1 0.0042 1.1E-07 40.2 2.5 109 72-181 202-319 (491)
228 TIGR03366 HpnZ_proposed putati 95.9 0.017 4.4E-07 36.2 5.0 112 59-183 111-224 (280)
229 KOG0024 consensus 95.8 0.018 4.5E-07 36.2 4.9 116 48-181 155-277 (354)
230 COG1063 Tdh Threonine dehydrog 95.8 0.023 6E-07 35.4 5.4 97 73-180 171-272 (350)
231 KOG0822 consensus 95.8 0.037 9.5E-07 34.1 6.3 102 71-174 368-475 (649)
232 KOG2198 consensus 95.7 0.017 4.4E-07 36.2 4.5 129 51-183 133-299 (375)
233 KOG4058 consensus 95.7 0.0076 1.9E-07 38.5 2.5 103 72-183 74-178 (199)
234 PRK09422 alcohol dehydrogenase 95.6 0.032 8.1E-07 34.5 5.4 106 59-177 153-261 (338)
235 COG3897 Predicted methyltransf 95.4 0.014 3.5E-07 36.8 3.0 107 66-180 75-182 (218)
236 TIGR00095 TIGR00095 putative m 95.3 0.019 4.9E-07 35.9 3.6 118 57-177 41-177 (210)
237 PRK11524 putative methyltransf 95.2 0.0066 1.7E-07 38.9 0.9 53 124-176 9-79 (284)
238 PRK13256 thiopurine S-methyltr 95.2 0.043 1.1E-06 33.6 5.0 109 69-181 42-167 (226)
239 COG1867 TRM1 N2,N2-dimethylgua 95.1 0.0098 2.5E-07 37.8 1.6 100 71-176 53-153 (380)
240 pfam07091 FmrO Ribosomal RNA m 95.1 0.049 1.2E-06 33.3 5.0 82 68-156 100-181 (248)
241 pfam00107 ADH_zinc_N Zinc-bind 95.0 0.054 1.4E-06 33.0 5.1 88 80-178 1-91 (131)
242 pfam04989 CmcI Cephalosporin h 95.0 0.073 1.9E-06 32.2 5.7 110 58-178 25-144 (202)
243 PRK01747 mnmC 5-methylaminomet 94.8 0.16 4.1E-06 30.0 7.0 43 69-111 56-107 (660)
244 KOG4589 consensus 94.8 0.032 8.1E-07 34.5 3.4 93 70-175 69-182 (232)
245 PRK08507 prephenate dehydrogen 94.6 0.078 2E-06 32.0 5.1 150 72-240 1-164 (275)
246 TIGR00692 tdh L-threonine 3-de 94.6 0.064 1.6E-06 32.6 4.5 107 60-178 151-262 (341)
247 PRK05396 tdh L-threonine 3-deh 94.5 0.03 7.7E-07 34.6 2.7 96 72-178 165-264 (341)
248 KOG1269 consensus 94.4 0.033 8.4E-07 34.4 2.7 105 71-177 181-288 (364)
249 TIGR02085 meth_trns_rumB 23S r 94.3 0.01 2.6E-07 37.7 -0.1 61 73-134 240-304 (386)
250 TIGR02817 adh_fam_1 zinc-bindi 94.1 0.097 2.5E-06 31.4 4.6 109 55-177 133-249 (338)
251 PRK07417 arogenate dehydrogena 94.0 0.097 2.5E-06 31.4 4.5 101 72-191 2-104 (280)
252 PRK07502 cyclohexadienyl dehyd 94.0 0.082 2.1E-06 31.8 4.2 102 73-190 8-111 (307)
253 PRK13699 putative methylase; P 94.0 0.022 5.6E-07 35.5 1.2 50 126-175 4-70 (227)
254 COG4301 Uncharacterized conser 93.7 0.29 7.3E-06 28.3 6.5 171 71-243 79-307 (321)
255 COG1565 Uncharacterized conser 93.6 0.18 4.6E-06 29.7 5.3 49 70-118 77-132 (370)
256 KOG1596 consensus 93.6 0.1 2.6E-06 31.3 4.0 99 62-175 150-259 (317)
257 pfam02636 DUF185 Uncharacteriz 93.5 0.23 5.9E-06 28.9 5.7 48 70-117 17-71 (240)
258 pfam06859 Bin3 Bicoid-interact 93.2 0.14 3.5E-06 30.4 4.2 85 140-246 1-94 (110)
259 KOG1562 consensus 92.9 0.067 1.7E-06 32.4 2.2 106 66-177 117-236 (337)
260 TIGR01444 fkbM_fam methyltrans 92.8 0.08 2E-06 31.9 2.4 48 73-120 1-49 (142)
261 pfam03514 GRAS GRAS family tra 92.8 0.66 1.7E-05 26.0 7.1 201 31-242 81-326 (371)
262 KOG2918 consensus 92.7 0.31 7.9E-06 28.1 5.3 171 68-245 85-278 (335)
263 PRK13699 putative methylase; P 92.6 0.091 2.3E-06 31.6 2.5 17 155-171 148-165 (227)
264 pfam05430 DUF752 Protein of un 92.6 0.097 2.5E-06 31.4 2.7 88 124-258 33-124 (124)
265 PRK11524 putative methyltransf 92.6 0.089 2.3E-06 31.6 2.4 11 223-233 256-266 (284)
266 KOG2793 consensus 92.3 0.17 4.4E-06 29.8 3.6 98 70-172 86-194 (248)
267 KOG2920 consensus 92.1 0.075 1.9E-06 32.1 1.6 37 71-109 117-153 (282)
268 pfam11312 DUF3115 Protein of u 92.0 0.3 7.6E-06 28.2 4.6 109 70-178 79-217 (288)
269 pfam03141 DUF248 Putative meth 91.8 0.34 8.6E-06 27.9 4.6 112 54-177 344-467 (506)
270 pfam01262 AlaDh_PNT_C Alanine 91.3 0.21 5.5E-06 29.2 3.2 99 70-175 19-119 (150)
271 pfam04445 DUF548 Protein of un 90.6 0.26 6.6E-06 28.7 3.1 86 58-146 63-157 (235)
272 pfam05711 TylF Macrocin-O-meth 90.5 1.5 3.7E-05 23.8 6.9 125 51-180 56-216 (249)
273 PRK11760 putative RNA 2'-O-rib 90.3 0.44 1.1E-05 27.1 4.1 88 68-170 208-295 (356)
274 KOG1227 consensus 90.2 0.098 2.5E-06 31.4 0.6 132 36-178 165-298 (351)
275 PRK10754 quinone oxidoreductas 90.1 0.3 7.8E-06 28.2 3.1 102 62-178 134-240 (327)
276 KOG1098 consensus 89.9 0.23 6E-06 28.9 2.4 92 70-174 44-155 (780)
277 KOG2671 consensus 89.8 0.16 4.1E-06 30.0 1.5 82 65-151 205-297 (421)
278 pfam02254 TrkA_N TrkA-N domain 89.6 0.28 7.1E-06 28.4 2.6 83 79-174 4-92 (115)
279 TIGR00006 TIGR00006 S-adenosyl 89.3 0.44 1.1E-05 27.2 3.4 98 60-161 19-125 (323)
280 pfam01861 DUF43 Protein of unk 89.1 0.93 2.4E-05 25.1 5.0 104 71-183 45-154 (243)
281 pfam10354 DUF2431 Domain of un 88.1 0.55 1.4E-05 26.5 3.3 97 79-176 3-124 (166)
282 pfam03269 DUF268 Caenorhabditi 88.1 0.7 1.8E-05 25.8 3.8 95 72-175 3-109 (177)
283 PRK06545 prephenate dehydrogen 88.0 0.67 1.7E-05 26.0 3.7 21 71-91 86-106 (357)
284 PRK06522 2-dehydropantoate 2-r 87.8 1.2 3E-05 24.4 4.8 99 72-176 1-101 (307)
285 KOG0023 consensus 86.5 1.6 4.2E-05 23.5 4.9 112 60-185 173-285 (360)
286 pfam11899 DUF3419 Protein of u 86.3 0.33 8.4E-06 28.0 1.3 46 66-114 31-76 (376)
287 pfam01795 Methyltransf_5 MraW 86.1 0.4 1E-05 27.4 1.6 42 153-194 217-258 (310)
288 PRK09424 pntA NAD(P) transhydr 85.6 1.2 3.1E-05 24.3 3.9 99 70-174 164-282 (510)
289 PRK04148 hypothetical protein; 85.4 1.4 3.7E-05 23.8 4.2 92 72-178 18-110 (135)
290 pfam11899 DUF3419 Protein of u 85.1 0.5 1.3E-05 26.8 1.7 74 102-176 253-330 (376)
291 KOG2360 consensus 84.7 0.57 1.4E-05 26.4 1.9 79 62-144 207-285 (413)
292 smart00829 PKS_ER Enoylreducta 84.4 1.2 3E-05 24.4 3.4 101 61-176 97-204 (288)
293 KOG2651 consensus 84.2 0.84 2.1E-05 25.3 2.6 51 59-112 143-193 (476)
294 PRK00050 mraW S-adenosyl-methy 84.1 0.46 1.2E-05 27.0 1.2 42 153-194 216-257 (309)
295 COG3129 Predicted SAM-dependen 84.1 0.55 1.4E-05 26.5 1.6 89 58-147 62-160 (292)
296 KOG2912 consensus 83.4 3.4 8.7E-05 21.4 5.4 89 55-146 87-184 (419)
297 COG0686 Ald Alanine dehydrogen 83.0 1.5 3.8E-05 23.8 3.4 97 71-174 168-265 (371)
298 KOG2352 consensus 82.6 0.79 2E-05 25.5 1.9 105 70-176 295-415 (482)
299 COG0270 Dcm Site-specific DNA 81.5 1.1 2.7E-05 24.7 2.2 70 71-148 3-75 (328)
300 COG0287 TyrA Prephenate dehydr 81.3 3.4 8.7E-05 21.4 4.8 101 73-188 5-107 (279)
301 PRK10742 putative methyltransf 80.8 1.6 4E-05 23.6 2.9 86 58-146 76-170 (250)
302 cd00315 Cyt_C5_DNA_methylase C 80.6 1.4 3.5E-05 23.9 2.6 68 72-148 1-70 (275)
303 TIGR00006 TIGR00006 S-adenosyl 80.1 0.83 2.1E-05 25.4 1.3 45 153-197 227-271 (323)
304 pfam07757 AdoMet_MTase Predict 78.9 2 5E-05 23.0 2.9 31 72-105 60-90 (112)
305 pfam02558 ApbA Ketopantoate re 77.9 4.5 0.00011 20.6 4.5 94 76-176 3-99 (150)
306 TIGR00514 accC acetyl-CoA carb 77.6 1.8 4.5E-05 23.3 2.3 149 8-206 217-393 (451)
307 PRK05708 2-dehydropantoate 2-r 77.4 5.9 0.00015 19.9 5.3 96 71-176 2-103 (305)
308 COG1062 AdhC Zn-dependent alco 76.8 3.1 8E-05 21.7 3.4 112 59-185 176-293 (366)
309 pfam05206 TRM13 Methyltransfer 76.1 4.6 0.00012 20.6 4.1 64 70-135 18-85 (256)
310 pfam02153 PDH Prephenate dehyd 75.7 3 7.8E-05 21.7 3.1 42 59-100 60-101 (258)
311 COG3510 CmcI Cephalosporin hyd 74.1 7.1 0.00018 19.4 4.7 102 71-178 70-181 (237)
312 pfam00145 DNA_methylase C-5 cy 72.9 3.1 7.8E-05 21.7 2.6 94 72-177 1-108 (319)
313 pfam03686 UPF0146 Uncharacteri 72.4 7.8 0.0002 19.1 4.8 88 72-179 15-104 (127)
314 pfam03721 UDPG_MGDP_dh_N UDP-g 72.0 5 0.00013 20.4 3.5 104 72-181 1-122 (185)
315 TIGR00677 fadh2_euk methylenet 71.2 2.1 5.5E-05 22.7 1.5 54 76-130 44-103 (312)
316 PRK10416 cell division protein 71.0 5.2 0.00013 20.3 3.4 113 69-185 293-430 (499)
317 COG5379 BtaA S-adenosylmethion 70.4 3 7.5E-05 21.8 2.0 62 53-117 46-107 (414)
318 KOG2078 consensus 68.7 1.2 3.1E-05 24.3 -0.3 59 71-132 250-309 (495)
319 pfam11599 AviRa RRNA methyltra 68.4 2 5E-05 23.0 0.7 45 71-115 52-97 (249)
320 pfam06016 Reovirus_L2 Reovirus 68.2 3.1 7.8E-05 21.7 1.7 101 70-180 822-929 (1289)
321 KOG2782 consensus 65.2 2.2 5.7E-05 22.6 0.5 100 58-161 33-141 (303)
322 COG1255 Uncharacterized protei 64.7 11 0.00029 18.1 4.1 84 72-175 15-100 (129)
323 PRK11064 wecC UDP-N-acetyl-D-m 64.6 5.8 0.00015 20.0 2.5 23 156-179 98-120 (415)
324 PRK03562 glutathione-regulated 64.0 12 0.00029 18.0 4.0 88 72-174 400-494 (615)
325 PRK10310 galactitol-specific P 63.4 3.9 9.9E-05 21.1 1.5 16 73-89 4-19 (94)
326 TIGR02717 AcCoA-syn-alpha acet 63.2 12 0.00031 17.9 4.5 111 59-173 288-409 (457)
327 cd02413 40S_S3_KH K homology R 62.5 12 0.00031 17.8 4.8 34 228-261 11-44 (81)
328 KOG2811 consensus 62.4 12 0.00032 17.8 4.2 64 69-135 181-247 (420)
329 PRK10867 signal recognition pa 62.0 13 0.00032 17.8 4.0 108 70-181 99-226 (453)
330 PRK10669 putative cation:proto 61.7 7 0.00018 19.4 2.6 87 74-175 420-513 (558)
331 KOG3924 consensus 59.4 11 0.00027 18.3 3.1 117 57-177 181-308 (419)
332 PRK03369 murD UDP-N-acetylmura 59.3 14 0.00035 17.6 3.7 16 96-111 164-179 (487)
333 PRK06249 2-dehydropantoate 2-r 58.5 14 0.00037 17.4 5.3 95 70-176 4-105 (313)
334 KOG0022 consensus 58.1 11 0.00027 18.3 2.9 105 61-180 185-297 (375)
335 PRK03659 glutathione-regulated 57.5 15 0.00038 17.3 4.1 88 73-175 402-496 (602)
336 PRK09496 trkA potassium transp 57.0 13 0.00032 17.8 3.2 80 60-147 221-304 (455)
337 PRK09242 tropinone reductase; 56.2 10 0.00027 18.3 2.7 60 71-133 10-72 (258)
338 PRK07831 short chain dehydroge 55.7 11 0.00029 18.0 2.8 60 71-133 16-79 (261)
339 PRK06940 short chain dehydroge 55.4 8.7 0.00022 18.8 2.1 101 73-176 6-127 (277)
340 pfam01408 GFO_IDH_MocA Oxidore 55.0 13 0.00033 17.7 2.9 66 73-147 2-69 (120)
341 COG0373 HemA Glutamyl-tRNA red 54.7 13 0.00033 17.7 2.9 101 70-183 177-278 (414)
342 PRK05580 primosome assembly pr 54.6 17 0.00043 17.0 4.8 115 72-190 453-581 (699)
343 cd06451 AGAT_like Alanine-glyo 54.2 17 0.00043 16.9 5.7 54 58-113 39-95 (356)
344 PRK08229 2-dehydropantoate 2-r 54.0 17 0.00044 16.9 5.1 34 139-175 72-105 (341)
345 COG0677 WecC UDP-N-acetyl-D-ma 53.8 6.1 0.00016 19.8 1.1 106 72-181 10-131 (436)
346 COG0604 Qor NADPH:quinone redu 53.7 17 0.00044 16.9 4.7 101 63-178 137-242 (326)
347 COG1086 Predicted nucleoside-d 53.4 7.9 0.0002 19.1 1.7 89 71-161 250-350 (588)
348 PRK06914 short chain dehydroge 52.8 13 0.00034 17.6 2.7 57 73-132 5-64 (280)
349 PRK06130 3-hydroxybutyryl-CoA 52.8 9.9 0.00025 18.4 2.1 93 73-174 7-111 (310)
350 PRK05664 threonine-phosphate d 52.8 17 0.00042 17.0 3.2 91 74-177 67-163 (330)
351 pfam02719 Polysacc_synt_2 Poly 52.4 8.2 0.00021 19.0 1.6 67 79-145 5-78 (280)
352 PRK12921 2-dehydropantoate 2-r 52.3 18 0.00046 16.7 4.7 21 155-175 80-100 (306)
353 COG3288 PntA NAD/NADP transhyd 52.1 11 0.00029 18.0 2.3 37 139-175 243-279 (356)
354 TIGR00222 panB 3-methyl-2-oxob 51.7 17 0.00044 16.9 3.2 48 115-180 71-119 (267)
355 PRK02472 murD UDP-N-acetylmura 51.4 19 0.00048 16.7 4.3 22 154-175 201-222 (450)
356 PRK11154 fadJ multifunctional 51.1 19 0.00048 16.6 4.3 99 72-174 310-422 (706)
357 COG0552 FtsY Signal recognitio 50.8 19 0.00049 16.6 3.3 112 70-185 138-274 (340)
358 PRK11730 fadB multifunctional 50.5 19 0.0005 16.6 3.3 98 72-174 314-425 (715)
359 PRK07062 short chain dehydroge 50.3 15 0.00039 17.2 2.7 59 72-133 9-70 (265)
360 PRK09273 hypothetical protein; 49.9 9.9 0.00025 18.5 1.7 52 74-139 66-117 (211)
361 PRK09186 flagellin modificatio 49.8 15 0.00039 17.2 2.6 60 72-133 5-65 (255)
362 PRK11908 NAD-dependent epimera 49.6 17 0.00043 17.0 2.8 65 73-145 3-73 (347)
363 cd05213 NAD_bind_Glutamyl_tRNA 49.5 5.2 0.00013 20.3 0.2 99 70-183 177-277 (311)
364 PRK12826 3-ketoacyl-(acyl-carr 49.5 15 0.00038 17.3 2.6 58 71-133 6-66 (253)
365 KOG3851 consensus 49.3 19 0.00048 16.6 3.1 93 69-163 37-156 (446)
366 COG4889 Predicted helicase [Ge 49.2 16 0.0004 17.1 2.6 20 70-89 845-864 (1518)
367 PRK05866 short chain dehydroge 49.0 20 0.00051 16.5 3.1 59 70-133 39-100 (290)
368 pfam02737 3HCDH_N 3-hydroxyacy 48.6 8.7 0.00022 18.8 1.3 97 74-175 2-112 (180)
369 cd01491 Ube1_repeat1 Ubiquitin 48.3 21 0.00053 16.3 4.6 102 53-166 6-128 (286)
370 KOG1252 consensus 46.2 23 0.00058 16.1 4.1 37 74-111 215-255 (362)
371 PRK04940 hypothetical protein; 46.1 23 0.00058 16.1 4.8 74 17-104 7-91 (179)
372 TIGR03026 NDP-sugDHase nucleot 46.0 20 0.00052 16.4 2.8 10 97-106 25-34 (411)
373 PRK05650 short chain dehydroge 45.8 17 0.00043 17.0 2.3 22 96-117 25-46 (270)
374 PRK07109 short chain dehydroge 45.4 23 0.00057 16.1 3.0 62 69-133 6-68 (338)
375 TIGR01082 murC UDP-N-acetylmur 44.3 24 0.00062 15.9 3.7 12 96-107 24-35 (491)
376 COG0031 CysK Cysteine synthase 44.0 24 0.00062 15.9 6.5 85 73-174 171-262 (300)
377 TIGR03169 Nterm_to_SelD pyridi 43.7 25 0.00063 15.9 3.8 100 70-178 144-265 (364)
378 cd01488 Uba3_RUB Ubiquitin act 43.0 24 0.00062 15.9 2.8 35 112-147 59-95 (291)
379 PRK05786 fabG 3-ketoacyl-(acyl 42.9 23 0.00059 16.0 2.7 100 71-176 5-134 (238)
380 PRK08213 gluconate 5-dehydroge 42.4 17 0.00044 16.9 2.0 58 71-133 12-72 (259)
381 cd01569 PBEF_like pre-B-cell c 42.3 12 0.00032 17.8 1.3 23 224-249 339-361 (407)
382 PRK02006 murD UDP-N-acetylmura 42.2 26 0.00066 15.7 3.9 10 100-109 179-188 (501)
383 COG4121 Uncharacterized conser 41.5 27 0.00068 15.7 3.1 36 226-262 211-246 (252)
384 PRK07666 fabG 3-ketoacyl-(acyl 41.4 26 0.00067 15.7 2.8 58 71-133 6-66 (238)
385 PRK12384 sorbitol-6-phosphate 41.2 24 0.00061 16.0 2.6 58 73-133 4-64 (259)
386 pfam04587 ADP_PFK_GK ADP-speci 40.6 27 0.0007 15.6 3.8 106 140-250 209-340 (444)
387 KOG1201 consensus 40.5 28 0.0007 15.6 3.2 55 70-130 37-94 (300)
388 PRK06194 hypothetical protein; 40.5 26 0.00067 15.7 2.7 59 72-133 7-66 (301)
389 PRK08862 short chain dehydroge 40.3 28 0.00071 15.6 2.8 56 71-131 5-63 (227)
390 cd07985 LPLAT_GPAT Lysophospho 39.7 19 0.00049 16.6 1.9 67 99-179 46-123 (235)
391 PRK08340 glucose-1-dehydrogena 39.7 23 0.0006 16.0 2.3 55 73-133 2-59 (259)
392 COG0541 Ffh Signal recognition 39.4 25 0.00065 15.8 2.5 107 69-180 98-224 (451)
393 TIGR02885 spore_sigF RNA polym 39.3 29 0.00073 15.5 3.8 32 138-175 57-88 (231)
394 PRK13590 putative bifunctional 39.1 29 0.00074 15.4 3.3 46 213-261 206-251 (590)
395 PRK07530 3-hydroxybutyryl-CoA 39.1 26 0.00066 15.8 2.5 97 73-174 6-116 (292)
396 PRK01438 murD UDP-N-acetylmura 39.0 29 0.00074 15.4 4.3 17 96-112 171-187 (481)
397 PRK05653 fabG 3-ketoacyl-(acyl 38.5 28 0.00072 15.5 2.6 57 72-133 6-65 (246)
398 PRK07085 diphosphate--fructose 38.0 30 0.00077 15.3 3.5 31 140-170 304-335 (557)
399 TIGR02035 D_Ser_am_lyase D-ser 37.6 22 0.00057 16.2 1.9 84 4-109 215-306 (431)
400 TIGR00308 TRM1 N2,N2-dimethylg 37.1 9.8 0.00025 18.5 0.1 98 72-175 96-202 (462)
401 PRK06181 short chain dehydroge 36.5 32 0.00081 15.2 2.6 16 155-170 211-226 (263)
402 cd02411 archeal_30S_S3_KH K ho 36.5 32 0.00081 15.2 4.9 35 226-260 17-51 (85)
403 COG1748 LYS9 Saccharopine dehy 36.4 32 0.00081 15.2 2.7 19 223-241 242-260 (389)
404 PRK07328 histidinol-phosphatas 36.4 26 0.00065 15.8 2.1 84 148-242 166-256 (268)
405 pfam10598 RRM_4 RNA recognitio 36.3 32 0.00082 15.2 3.7 51 3-55 21-73 (94)
406 COG4359 Uncharacterized conser 36.3 32 0.00082 15.2 4.7 97 9-109 20-127 (220)
407 PRK08085 gluconate 5-dehydroge 36.2 32 0.00082 15.1 2.9 58 71-133 9-69 (254)
408 pfam07101 DUF1363 Protein of u 36.0 20 0.00051 16.5 1.5 32 74-105 6-37 (124)
409 TIGR01179 galE UDP-glucose 4-e 35.5 19 0.00048 16.6 1.3 57 84-145 15-81 (341)
410 PRK08306 dipicolinate synthase 35.3 33 0.00085 15.1 2.7 96 68-183 149-246 (296)
411 PRK05599 hypothetical protein; 35.0 30 0.00077 15.3 2.3 57 73-131 2-58 (246)
412 PRK06035 3-hydroxyacyl-CoA deh 34.8 30 0.00077 15.3 2.3 98 73-174 5-118 (291)
413 KOG3554 consensus 34.8 25 0.00064 15.9 1.8 96 165-263 270-379 (693)
414 TIGR02477 PFKA_PPi diphosphate 34.7 6.9 0.00018 19.5 -1.0 103 34-173 222-340 (566)
415 PRK13799 unknown domain/N-carb 34.6 34 0.00087 15.0 3.4 36 225-261 217-252 (591)
416 PRK09260 3-hydroxybutyryl-CoA 34.6 34 0.00087 15.0 2.8 97 73-174 4-115 (289)
417 PRK08277 D-mannonate oxidoredu 34.3 8.4 0.00021 18.9 -0.7 57 72-133 11-70 (278)
418 PRK07677 short chain dehydroge 34.2 35 0.00088 14.9 2.5 56 73-133 5-63 (254)
419 pfam10609 ParA ParA/MinD ATPas 34.1 26 0.00065 15.8 1.8 61 73-135 4-64 (81)
420 TIGR01137 cysta_beta cystathio 34.1 35 0.00088 14.9 3.7 103 71-176 179-309 (527)
421 PRK00045 hemA glutamyl-tRNA re 34.0 16 0.0004 17.2 0.7 101 70-183 181-284 (429)
422 pfam03446 NAD_binding_2 NAD bi 33.8 35 0.00089 14.9 2.9 99 73-190 3-106 (163)
423 PRK08251 short chain dehydroge 33.6 35 0.00088 14.9 2.4 59 73-132 4-63 (248)
424 TIGR00059 L17 ribosomal protei 33.5 27 0.00068 15.7 1.8 18 25-42 79-96 (125)
425 pfam01488 Shikimate_DH Shikima 33.5 35 0.00091 14.9 4.4 99 71-183 12-112 (134)
426 PRK08339 short chain dehydroge 33.4 36 0.00091 14.9 2.8 58 72-133 9-69 (263)
427 PRK08217 fabG 3-ketoacyl-(acyl 32.9 36 0.00092 14.8 2.6 57 72-133 6-65 (253)
428 TIGR02987 met_A_Alw26 type II 32.7 18 0.00046 16.8 0.8 50 70-119 33-93 (603)
429 TIGR03206 benzo_BadH 2-hydroxy 32.5 9.4 0.00024 18.6 -0.6 57 73-134 5-64 (250)
430 KOG0780 consensus 32.1 37 0.00095 14.7 7.4 116 64-180 94-225 (483)
431 PRK07479 consensus 31.5 38 0.00098 14.7 2.7 57 72-133 6-65 (252)
432 TIGR00652 DapF diaminopimelate 31.5 22 0.00056 16.2 1.1 14 21-34 26-39 (294)
433 PRK07066 3-hydroxybutyryl-CoA 30.8 32 0.00082 15.2 1.8 98 73-174 9-116 (321)
434 PRK06425 histidinol-phosphate 30.7 39 0.001 14.6 4.6 107 57-177 46-161 (332)
435 pfam04361 DUF494 Protein of un 30.2 39 0.001 14.6 2.2 12 206-217 133-144 (155)
436 COG1054 Predicted sulfurtransf 30.1 11 0.00028 18.1 -0.6 37 224-264 184-220 (308)
437 PRK07531 bifunctional 3-hydrox 30.1 40 0.001 14.5 4.0 27 148-174 81-111 (489)
438 PRK11199 tyrA bifunctional cho 30.1 40 0.001 14.5 8.2 26 70-96 97-122 (374)
439 COG1250 FadB 3-hydroxyacyl-CoA 29.9 24 0.00061 16.0 1.0 97 73-174 5-115 (307)
440 TIGR00518 alaDH alanine dehydr 29.4 41 0.0011 14.4 3.1 97 72-175 169-266 (372)
441 PRK08268 3-hydroxybutyryl-CoA 29.2 40 0.001 14.5 2.1 40 73-115 5-46 (503)
442 PRK08238 hypothetical protein; 29.2 42 0.0011 14.4 3.8 59 58-117 77-136 (481)
443 PRK12429 3-hydroxybutyrate deh 28.8 42 0.0011 14.4 2.7 57 72-133 5-64 (258)
444 TIGR00867 deg-1 degenerin; Int 28.5 43 0.0011 14.3 2.3 43 124-174 513-559 (757)
445 PRK12939 short chain dehydroge 28.5 13 0.00033 17.7 -0.5 58 72-134 8-68 (250)
446 PRK07576 short chain dehydroge 28.2 43 0.0011 14.3 2.7 60 72-134 9-69 (260)
447 COG4421 Capsular polysaccharid 28.1 44 0.0011 14.3 3.0 30 216-245 234-263 (368)
448 PRK06139 short chain dehydroge 28.0 44 0.0011 14.3 3.1 58 71-133 6-66 (324)
449 PRK07814 short chain dehydroge 27.9 14 0.00035 17.6 -0.5 59 71-134 10-71 (263)
450 PRK09432 metF 5,10-methylenete 27.9 44 0.0011 14.3 3.0 75 51-131 37-121 (296)
451 TIGR02824 quinone_pig3 putativ 27.7 44 0.0011 14.2 3.6 105 55-178 132-246 (334)
452 PRK05867 short chain dehydroge 27.1 45 0.0012 14.2 3.1 59 70-133 8-69 (253)
453 PRK07889 enoyl-(acyl carrier p 27.1 37 0.00095 14.7 1.6 20 159-178 127-146 (256)
454 PRK03979 ADP-specific phosphof 27.1 45 0.0012 14.2 5.8 31 227-261 316-346 (451)
455 cd03413 CbiK_C Anaerobic cobal 27.0 42 0.0011 14.4 1.9 18 224-242 80-97 (103)
456 COG3797 Uncharacterized protei 27.0 34 0.00086 15.0 1.4 17 73-89 45-61 (178)
457 PRK06720 hypothetical protein; 27.0 46 0.0012 14.2 2.9 58 71-133 16-76 (169)
458 pfam07109 Mg-por_mtran_C Magne 26.3 47 0.0012 14.1 2.5 74 154-248 11-86 (97)
459 PRK07890 short chain dehydroge 26.2 47 0.0012 14.1 2.8 57 72-133 6-65 (258)
460 PRK09198 putative nicotinate p 26.0 33 0.00083 15.1 1.2 22 225-249 342-363 (462)
461 PRK07097 gluconate 5-dehydroge 25.8 48 0.0012 14.0 2.7 57 72-133 11-70 (265)
462 pfam06725 3D 3D domain. This s 25.7 48 0.0012 14.0 2.3 27 74-100 46-72 (74)
463 KOG2741 consensus 25.6 48 0.0012 14.0 2.4 12 38-49 135-146 (351)
464 PRK07535 methyltetrahydrofolat 25.5 17 0.00043 17.0 -0.4 12 71-82 38-49 (268)
465 PRK06129 3-hydroxyacyl-CoA deh 25.3 49 0.0012 14.0 2.9 97 73-174 4-115 (308)
466 TIGR01139 cysK cysteine syntha 25.3 49 0.0012 14.0 2.5 37 74-110 170-212 (312)
467 TIGR01464 hemE uroporphyrinoge 25.2 47 0.0012 14.1 1.9 67 58-131 222-292 (351)
468 TIGR01469 cobA_cysG_Cterm urop 25.0 50 0.0013 13.9 2.1 42 73-115 2-48 (242)
469 COG2933 Predicted SAM-dependen 24.7 50 0.0013 13.9 2.8 33 226-258 321-356 (358)
470 KOG1202 consensus 24.6 16 0.00042 17.0 -0.6 23 155-177 1238-1260(2376)
471 PRK07478 short chain dehydroge 24.5 51 0.0013 13.9 2.7 57 72-133 7-66 (254)
472 cd01484 E1-2_like Ubiquitin ac 24.4 51 0.0013 13.9 3.6 93 73-169 1-118 (234)
473 PRK07660 consensus 24.3 51 0.0013 13.8 2.0 97 73-174 5-115 (283)
474 PRK07063 short chain dehydroge 24.0 52 0.0013 13.8 2.6 58 72-133 8-68 (259)
475 PRK06124 gluconate 5-dehydroge 23.9 52 0.0013 13.8 2.7 58 72-134 15-75 (259)
476 COG1568 Predicted methyltransf 23.9 52 0.0013 13.8 3.4 99 72-175 154-258 (354)
477 TIGR01546 GAPDH-II_archae glyc 23.8 28 0.00072 15.5 0.6 34 76-113 135-169 (335)
478 TIGR01035 hemA glutamyl-tRNA r 23.6 53 0.0013 13.8 2.3 121 71-196 185-312 (436)
479 PRK07832 short chain dehydroge 23.3 53 0.0014 13.7 2.6 43 73-118 2-47 (272)
480 COG2326 Uncharacterized conser 23.3 53 0.0014 13.7 3.6 20 156-175 159-181 (270)
481 KOG2014 consensus 23.2 54 0.0014 13.7 2.8 92 40-148 13-128 (331)
482 pfam04189 Gcd10p Gcd10p family 23.2 54 0.0014 13.7 4.3 10 168-177 201-210 (300)
483 COG4972 PilM Tfp pilus assembl 23.2 41 0.001 14.5 1.2 20 232-251 280-299 (354)
484 PRK06949 short chain dehydroge 23.1 54 0.0014 13.7 2.7 58 71-133 9-69 (258)
485 PRK11544 hycI hydrogenase 3 ma 23.0 54 0.0014 13.7 4.2 45 59-105 21-65 (156)
486 TIGR02633 xylG D-xylose ABC tr 22.9 54 0.0014 13.7 3.3 50 58-108 122-172 (501)
487 PRK09401 reverse gyrase; Revie 22.8 55 0.0014 13.7 4.5 118 24-158 61-197 (1176)
488 KOG0564 consensus 22.7 19 0.00049 16.6 -0.5 81 78-164 58-144 (590)
489 PRK07102 short chain dehydroge 22.6 55 0.0014 13.6 2.4 60 73-133 3-62 (243)
490 COG5322 Predicted dehydrogenas 22.2 56 0.0014 13.6 3.2 92 79-183 173-265 (351)
491 PRK13656 trans-2-enoyl-CoA red 22.2 56 0.0014 13.6 3.7 65 59-126 29-94 (400)
492 PRK12829 short chain dehydroge 22.1 56 0.0014 13.6 3.0 68 60-133 2-69 (264)
493 PRK12490 6-phosphogluconate de 21.9 57 0.0014 13.6 3.2 115 80-207 7-122 (298)
494 PRK00771 signal recognition pa 21.9 57 0.0014 13.6 2.7 100 78-177 107-216 (433)
495 PRK06227 consensus 21.9 20 0.00052 16.4 -0.5 78 70-149 4-81 (256)
496 PRK05875 short chain dehydroge 21.8 57 0.0015 13.5 2.8 64 70-133 6-70 (277)
497 PRK03430 hypothetical protein; 21.6 57 0.0014 13.6 1.7 26 214-239 7-37 (157)
498 PRK06172 short chain dehydroge 21.6 58 0.0015 13.5 2.7 62 70-133 6-67 (253)
499 PRK06198 short chain dehydroge 21.1 19 0.00049 16.6 -0.8 78 70-149 5-83 (268)
500 cd05566 PTS_IIB_galactitol PTS 21.1 46 0.0012 14.2 1.2 17 73-90 2-18 (89)
No 1
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=100.00 E-value=0 Score=536.99 Aligned_cols=228 Identities=45% Similarity=0.812 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC--CCCCEEEECCHHHHHHHHHHHHHCC--------CCCEEE
Q ss_conf 999998763421157667614801799999985206446--7997798602335577777664138--------863278
Q gi|254780624|r 30 VNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRK--SKDYRVLDVAGGTGDVAFRIAEASD--------NRSQIV 99 (265)
Q Consensus 30 v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~--~~~~~iLDiGcGTG~~~~~l~~~~~--------~~~~v~ 99 (265)
|++||++||++||+||++||||+||.||+.+++.+.+.. .++.+|||||||||+++..+++..+ +.++||
T Consensus 1 v~~~F~~iA~~YD~~N~~lSfG~h~~Wr~~~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vt 80 (242)
T TIGR01934 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVT 80 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 93478776443526755776743289999999987862368888977887238399999998635755533577633789
Q ss_pred EECCCCCCCCCCCCCHHCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 72133222211110000011---222222222223334575544674036642013213443201210004852117763
Q gi|254780624|r 100 VADINNEMLSVGRDRAFKEN---LQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 100 giD~s~~Ml~~a~~r~~~~~---~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
|+|+|++||+.|++|..+.+ ...||+|+++||++|||+|+|||+|||||||||++|+++||+|++|||||||+++|+
T Consensus 81 g~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF~D~sFD~~TiaFGlRN~~d~~~aL~E~~RVLKpgG~l~iL 160 (242)
T TIGR01934 81 GVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 160 (242)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 87079889999987413420033321642110005508799862444664025547468678987731101889879984
Q ss_pred ECCCCCC-CHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEE
Q ss_conf 0554455-101123456531113321025428876865789999968998999999997599537999855664999999
Q gi|254780624|r 177 EFSEVQG-PVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSG 255 (265)
Q Consensus 177 df~~p~~-~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g 255 (265)
||++|.+ .+++++|++|+++|||.+|++++++.++|+||++||+.||++++|..+++++||+.+++++++||+++||+|
T Consensus 161 Ef~~P~~~~~~~~~Y~~Y~~~v~P~~G~~~s~~~~aY~YL~eSi~~FP~~~~l~~~~~~aGF~~~~~~~l~fGv~~~~~g 240 (242)
T TIGR01934 161 EFSKPANGAFLKKFYKFYLKNVLPSIGGLISKNKEAYEYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVG 240 (242)
T ss_pred CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHC
T ss_conf 07867641688999998850003777777407886657788998753898899999997386321100303552665542
Q ss_pred EE
Q ss_conf 81
Q gi|254780624|r 256 WK 257 (265)
Q Consensus 256 ~K 257 (265)
+|
T Consensus 241 ~K 242 (242)
T TIGR01934 241 KK 242 (242)
T ss_pred CC
T ss_conf 79
No 2
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=100.00 E-value=0 Score=506.99 Aligned_cols=239 Identities=46% Similarity=0.846 Sum_probs=232.7
Q ss_pred CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE
Q ss_conf 21279899999999999876342115766761480179999998520644679977986023355777776641388632
Q gi|254780624|r 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265)
Q Consensus 18 f~~v~~~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265)
|.++++++|++.|++|||+||++||++|+++|||+|+.||+++++.+.+.++ .+|||+|||||+++..+++++++.++
T Consensus 1 ~~~~~~~~k~~~V~~~Fd~iA~~YD~~N~~~S~G~~~~Wr~~~v~~l~~~~g--~~vLDvgcGTG~~~~~l~~~~~~~~~ 78 (239)
T PRK00216 1 FMTVALEEKQEKVAEVFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGETGE 78 (239)
T ss_pred CCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHCCCCCE
T ss_conf 9437856799999999988787885876675075199999999986278999--98988457763879999997299767
Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 78721332222111100000112222222222233345755446740366420132134432012100048521177630
Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
|+|+|+|++||+.|++|+.+.+...+|+|+++||++|||+|++||+|+++|+|||++|++++|+|++|||||||+++|+|
T Consensus 79 v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~f~l~~~~d~~~~l~E~~RVLkPGG~l~ile 158 (239)
T PRK00216 79 VVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99991988999999999997389888507982355688876667650026156714867999999998766480899997
Q ss_pred CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 55445510112345653111332102542887686578999996899899999999759953799985566499999981
Q gi|254780624|r 178 FSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265)
Q Consensus 178 f~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265)
|++|++++++.+|.+|+++++|.+|+++++++++|+||++||+.||+++++.++|+++||++|+++++++|+++||+|+|
T Consensus 159 fs~p~~~~~~~~y~~Y~~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~aGF~~v~~~~l~~Gi~~i~~~~K 238 (239)
T PRK00216 159 FSKPTNPPLKKAYDFYLFKVLPLIGKLVSKNAEAYRYLAESIRAFPDQEELAAMMEEAGFERVKYRNLTGGIVALHVGYK 238 (239)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 58999768899999999999999999971987888769999998889999999999879967889987887699999989
Q ss_pred E
Q ss_conf 1
Q gi|254780624|r 258 C 258 (265)
Q Consensus 258 p 258 (265)
|
T Consensus 239 p 239 (239)
T PRK00216 239 P 239 (239)
T ss_pred C
T ss_conf 2
No 3
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=100.00 E-value=0 Score=488.03 Aligned_cols=230 Identities=41% Similarity=0.768 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99999999998763421157667614801799999985206446799779860233557777766413886327872133
Q gi|254780624|r 25 EKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADIN 104 (265)
Q Consensus 25 ~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s 104 (265)
-|+++|++|||+||++||++|+++|||+|+.||+++++.+.+.++ .+|||+|||||+++..+++..++.++|+|+|+|
T Consensus 4 ~K~~~V~~mF~~Ia~~YD~~N~~~S~G~~~~WR~~~v~~~~~~~g--~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S 81 (233)
T pfam01209 4 LKEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRG--NKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDIN 81 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 089999999986365887888786073499999999986189999--989982540588999999984999749999699
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf 22221111000001122222222222333457554467403664201321344320121000485211776305544551
Q gi|254780624|r 105 NEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265)
Q Consensus 105 ~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265)
++||+.|++|+.+.+. .+|+|+++||+++||+|++||+|+++|+|||++|++++++|++|||||||+++|+||++|+++
T Consensus 82 ~~ML~~a~~k~~~~~~-~~i~~~~~da~~lpf~d~sfD~v~~~fglrn~~d~~~al~E~~RVLKPGG~l~ilefs~P~~~ 160 (233)
T pfam01209 82 ENMLKEGEKKAKEEGK-YNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENP 160 (233)
T ss_pred HHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 9999999999985699-983699821666886665657314210121258889999999987278978999978888777
Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 0112345653111332102542887686578999996899899999999759953799985566499999981
Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265)
Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265)
+++.+|.+|++.++|.+|+++++++++|+||++||++||+++++.++|+++||++|+++++++|+|+||+|+|
T Consensus 161 ~~~~~~~~Y~~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~~GF~~v~~~~l~~Gi~~i~~g~K 233 (233)
T pfam01209 161 LLSQAYELYFKYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESLTGGIAAIHWGIK 233 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 9999999999535999779984998998519999998799999999999879977789987773789999979
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=450.03 Aligned_cols=237 Identities=48% Similarity=0.865 Sum_probs=225.0
Q ss_pred CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE
Q ss_conf 21279899999999999876342115766761480179999998520644679977986023355777776641388632
Q gi|254780624|r 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265)
Q Consensus 18 f~~v~~~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265)
|+.+...+|++.|+++|++||+.||++|+++|||+|+.||+.+++.+.+.+ +.+|||||||||+++..+++..+ .++
T Consensus 1 ~~~~~~~~k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~--g~~vLDva~GTGd~a~~~~k~~g-~g~ 77 (238)
T COG2226 1 FKMVAKDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKP--GDKVLDVACGTGDMALLLAKSVG-TGE 77 (238)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHHHHCC-CCE
T ss_conf 972211244888999987657788754212037403999999998607899--98799966873199999999658-844
Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 78721332222111100000112222222222233345755446740366420132134432012100048521177630
Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
|+|+|+|++||+.|++|+.+.+... |+|++|||++|||+|+|||+|+|+|+|||++|++++|+|++|||||||+++++|
T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 78 VVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCC-EEEEEECHHHCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9999799999999998743247663-279970565498888765889865123527878999999987626874999987
Q ss_pred CCCCCCCHHHHHHHHHHHC-HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 5544551011234565311-133210254288768657899999689989999999975995379998556649999998
Q gi|254780624|r 178 FSEVQGPVFKKIYDMWSFK-VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGW 256 (265)
Q Consensus 178 f~~p~~~~~~~~~~~y~~~-iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~ 256 (265)
|++|.+++++..|..|..+ ++|.+|++++++.++|+||++||+.||+++++..+++++||+.|.++++++|++++|+|+
T Consensus 157 ~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 157 FSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEEEEEEEEEEEEE
T ss_conf 68998601699999999974765621211068499999998888589989999999866846876675330169999973
Q ss_pred EE
Q ss_conf 11
Q gi|254780624|r 257 KC 258 (265)
Q Consensus 257 Kp 258 (265)
||
T Consensus 237 K~ 238 (238)
T COG2226 237 KP 238 (238)
T ss_pred CC
T ss_conf 59
No 5
>KOG1540 consensus
Probab=100.00 E-value=0 Score=450.77 Aligned_cols=250 Identities=53% Similarity=0.903 Sum_probs=239.0
Q ss_pred CCCCCCEEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHH
Q ss_conf 45678512115212798999999999998763421157667614801799999985206446799779860233557777
Q gi|254780624|r 7 DSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAF 86 (265)
Q Consensus 7 ~~~~~~~~~fGf~~v~~~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~ 86 (265)
.+-....|||||+.|.+++|++.|+.+|+++|+.||.|||.||+|+||.||+..+..+.|..+ +++||+|||||++++
T Consensus 39 ~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~--m~~lDvaGGTGDiaF 116 (296)
T KOG1540 39 LSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKG--MKVLDVAGGTGDIAF 116 (296)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC--CEEEEECCCCCHHHH
T ss_conf 464332143461203655533489999998888887788876212367888876621587778--758983477525677
Q ss_pred HHHHHCCCC-----CEEEEECCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 766413886-----3278721332222111100000112222--222222233345755446740366420132134432
Q gi|254780624|r 87 RIAEASDNR-----SQIVVADINNEMLSVGRDRAFKENLQDC--ITFIEANAETLPFEANSFDACTLAFGIRNMPHITLV 159 (265)
Q Consensus 87 ~l~~~~~~~-----~~v~giD~s~~Ml~~a~~r~~~~~~~~~--i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~ 159 (265)
.+.+..+.+ .+|+.+||+++||+++++|+.+.++.+. +.|+++|||+|||+|++||.+|++||+||++|++++
T Consensus 117 ril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~ 196 (296)
T KOG1540 117 RILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA 196 (296)
T ss_pred HHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEECCCCHHHH
T ss_conf 79876113457777617999389899999987775159776871699947701089997751158884211147877899
Q ss_pred HCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCE
Q ss_conf 01210004852117763055445510112345653111332102542887686578999996899899999999759953
Q gi|254780624|r 160 LQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSN 239 (265)
Q Consensus 160 l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~ 239 (265)
|+|+||||||||+|.|+||++..++.+.++|+.|++.++|.+|.++.++++.|.||.+||+.||+++++..+.++|||..
T Consensus 197 l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~ 276 (296)
T KOG1540 197 LREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSS 276 (296)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 99998752778679999735454077899997122232110557665217654547766506998899999999728751
Q ss_pred EE-EEECCCCEEEEEEEEEE
Q ss_conf 79-99855664999999811
Q gi|254780624|r 240 VS-FTNYTNGVVALHSGWKC 258 (265)
Q Consensus 240 v~-~~~~~~Gi~~i~~g~Kp 258 (265)
+. +.+++||+++||.|.|+
T Consensus 277 ~~~ye~lt~Gv~aIH~giK~ 296 (296)
T KOG1540 277 VNGYENLTFGVVAIHSGIKL 296 (296)
T ss_pred CCCCCCCEEEEEEEEHHCCC
T ss_conf 02304421245454202269
No 6
>PRK05785 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=416.60 Aligned_cols=217 Identities=19% Similarity=0.349 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999999987634211576676148017999999852064467-9977986023355777776641388632787213
Q gi|254780624|r 25 EKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKS-KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADI 103 (265)
Q Consensus 25 ~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~-~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~ 103 (265)
.+.+.|++|||+||++||++|++||||+|+.||+++++.+....+ ++.+|||+|||||+++..+.+. .+++|+|+
T Consensus 5 ~~~e~V~~mF~~IA~~YD~~N~~mSlG~~~~Wrr~~v~~~~~~~~~~~~~vLDva~GTGd~a~~l~~~----~~v~~~D~ 80 (225)
T PRK05785 5 ASWEELQEAYNKIPKAYERANRLITFGNVDRWRAEAVKLIYKYDGKSPLKVLDAGAGPGNMAYHLRKI----RYVVALDY 80 (225)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC----CEEEEEEC
T ss_conf 88899999999887789988889828970999999999987306788882899568843999996347----86999988
Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 32222111100000112222222222233345755446740366420132134432012100048521177630554455
Q gi|254780624|r 104 NNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 104 s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
|++||+.|+.+. +.+++|||+|||+|+|||+|+++|||||++|++++|+|++||||+ ++|+||++|++
T Consensus 81 s~~ML~~a~~~~---------~~v~~~ae~LPf~d~sFD~vt~~FglRN~~d~~~al~E~~RVlk~---~~iLe~s~P~~ 148 (225)
T PRK05785 81 TEEMLRLNLVAD---------DKVVGSFEAMPFRDKSFDLVMSGYALHASDDIEKAVAEFSRVSRY---QVVVAIGKPDN 148 (225)
T ss_pred CHHHHHHHHHCC---------CCEEEHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCC---EEEEEECCCCC
T ss_conf 999999876432---------113731853999988252776344300488899999999973097---79999689984
Q ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 1011234565311133210254288768--65789999968998999999997599537999855664999999811
Q gi|254780624|r 184 PVFKKIYDMWSFKVIPQLGRFIAGDEEP--YQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKC 258 (265)
Q Consensus 184 ~~~~~~~~~y~~~iiP~~g~~~~~~~~~--Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp 258 (265)
++++.+|.+|+++++|.+|++++++.++ |+||++||+.||+++++.++|+++||..+ +++++||+|+||+|+|-
T Consensus 149 ~~~r~~y~~Y~~~ilP~ig~l~~~~~~a~~Y~YL~~SI~~fP~~~~l~~~l~~~~~~~~-~~~~~~Giv~i~~g~K~ 224 (225)
T PRK05785 149 VVARKLLSFYLKYILPYLACLVGPKEVCREYKKIYYIYKRLPTNSQLRQIISRYADIKV-FEEKALGLVYFYVASSR 224 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCEEE-EECCCCCEEEEEEEEEC
T ss_conf 78999999999656898628870999875241799999987999999999998487478-75066567999999808
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=100.00 E-value=0 Score=340.04 Aligned_cols=230 Identities=35% Similarity=0.656 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99999999998763421157667614801799999985206446799779860233557777766413886327872133
Q gi|254780624|r 25 EKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADIN 104 (265)
Q Consensus 25 ~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s 104 (265)
.|+++|+.+|.+|.+.||.||.++||-.|..||+..++.+..+.|. ..||+||||+++++.+++..++.++|.|+|+|
T Consensus 2 ~ke~~vh~vf~~i~~~yd~mnsvis~~~h~~Wr~~~m~~m~v~~G~--~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs 79 (231)
T TIGR02752 2 SKEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQKGK--KALDVCCGTADWAIALAEAVGKEGEVKGLDFS 79 (231)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 4356899999999875435777888898888999998776564041--21121037337888988861777716740035
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf 22221111000001122222222222333457554467403664201321344320121000485211776305544551
Q gi|254780624|r 105 NEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265)
Q Consensus 105 ~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265)
++||.++++|...... .+|.+++|+|.+|||+|++||.|+++|||||+||.-.+|+|+.||+||||.++++|.++|+-.
T Consensus 80 ~nml~~~~~k~~~~~~-~~~~l~hGnam~lP~~~~~fdyvtiGfGlrnvPdy~~vl~em~rv~kPGG~~~C~~tsqP~~~ 158 (231)
T TIGR02752 80 ENMLSVGKQKVKDAKL-SNVELVHGNAMELPYDDNSFDYVTIGFGLRNVPDYMTVLKEMARVVKPGGKVVCLETSQPTLP 158 (231)
T ss_pred HHHHHHHHHHHHHHHH-HHEEEECCCHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 8899999988875432-002223052001787766612577525512302699999998886279971798625776257
Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 0112345653111332102542887686578999996899899999999759953799985566499999981
Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265)
Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265)
.++++|.+|.+.++|.+|+++++..+.|.||.+|.+.||..++|..++.++||.+|+.+++++|++++|.|.|
T Consensus 159 ~~~q~y~~yf~~~mP~~Gk~~ak~y~eysWlqes~~~fPG~~~l~~~f~~~G~~~v~~~~~~~G~~a~h~G~k 231 (231)
T TIGR02752 159 GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESAREFPGKDELAEMFKEAGLKDVEVKSYTGGVAAMHLGFK 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHEEEEECCCCHHHHHCCCC
T ss_conf 9999999999999887778886433455777777651786789999998527011223100132123211579
No 8
>PRK08317 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-33 Score=233.17 Aligned_cols=168 Identities=26% Similarity=0.432 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 79999998520644679977986023355777776641388632787213322221111000001122222222222333
Q gi|254780624|r 54 RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 54 r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+.||+.+++.|.+++|. +|||+|||||..+..+++++++.++|+|+|+|+.||+.|++++...+ .+++|+++|+++
T Consensus 5 ~~~r~~~l~~L~l~pG~--~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~ 80 (241)
T PRK08317 5 RRYRARTFELLAVQPGE--RVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLL--SNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHHCCCCCCC--EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCHHH
T ss_conf 89999999736999979--99996641749999999974999789999698899999999986228--964999554643
Q ss_pred CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCC------CCC-CHHHHHHHHHHHCHHHHHHHHHC
Q ss_conf 45755446740366420132134432012100048521177630554------455-10112345653111332102542
Q gi|254780624|r 134 LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE------VQG-PVFKKIYDMWSFKVIPQLGRFIA 206 (265)
Q Consensus 134 lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~------p~~-~~~~~~~~~y~~~iiP~~g~~~~ 206 (265)
+||+|++||+|++.++|+|++|++++|+|++|||||||++++.|.-- |.. ...+.+.+.|....
T Consensus 81 lp~~d~sfD~v~~~~~l~h~~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~~~~~~~~i~~~~~~~~--------- 151 (241)
T PRK08317 81 LPFPDESFDAVRSDRVLQHLEDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSGDRALMRKILNFWSDHF--------- 151 (241)
T ss_pred CCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC---------
T ss_conf 58988870456221157622589999999999818883899996678867428988899999999999747---------
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 88768657899999689989999999975995379998556
Q gi|254780624|r 207 GDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN 247 (265)
Q Consensus 207 ~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~ 247 (265)
.+ + .-+.+|..+|+++||++|+.+..+.
T Consensus 152 ~~--~-----------~~gr~L~~~l~~aG~~~v~~~~~~~ 179 (241)
T PRK08317 152 AN--P-----------WLGRRLPGLFREAGLTDIEVEPYTL 179 (241)
T ss_pred CC--C-----------HHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 89--2-----------0789999999986990568888778
No 9
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.97 E-value=1.3e-31 Score=223.87 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=133.3
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
++.+|||+|||||..++.+++++++.++|+|+|+|++||+.||+++.+.+. .||+|.+||+++|||+|+|||+|++..+
T Consensus 73 pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~-~NVeF~~Gdae~LPl~D~SfDvViSncV 151 (258)
T PRK11873 73 PGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADGSVDVIISNCV 151 (258)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCEEEEEECCE
T ss_conf 999899947887775999999869997799985999999999999997599-7559999555313689883519988246
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCC--CCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 01321344320121000485211776305544--5510112345653111332102542887686578999996899899
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEV--QGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQD 227 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p--~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~e 227 (265)
|++++|++++|+|++|||||||+++|.|+... -...++.--..|... +++ =.+.++
T Consensus 152 lnl~pDk~~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~~r~d~~l~~~C--------iaG--------------A~~~~~ 209 (258)
T PRK11873 152 INLSPDKERVFREAFRVLKPGGRFAISDVVLTGELPEELRNDAALYAGC--------VAG--------------ALSVEE 209 (258)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCHHHHHCC--------CCC--------------CCCHHH
T ss_conf 7607987999999999628897899997412777999998598987312--------036--------------685999
Q ss_pred HHHHHHHCCCCEEEEEECC----------C-----C--EEEEEEEEEEC
Q ss_conf 9999997599537999855----------6-----6--49999998116
Q gi|254780624|r 228 FAAVISAAGFSNVSFTNYT----------N-----G--VVALHSGWKCE 259 (265)
Q Consensus 228 l~~~l~~aGF~~v~~~~~~----------~-----G--i~~i~~g~Kp~ 259 (265)
+.++|+++||++|++..-- . + +.+.+.|+||.
T Consensus 210 ~~~~l~~aGF~~i~i~~~~~~~~~~~~~~~~~~~~~~~~s~~i~a~kp~ 258 (258)
T PRK11873 210 YLAMLAEAGFVDITIEPKRDSREFLRGDASARQLDGYIFSATVEARKPA 258 (258)
T ss_pred HHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEEEEEEECCC
T ss_conf 9999997699832998553279999840775771227999999986789
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.97 E-value=3.3e-30 Score=214.77 Aligned_cols=143 Identities=23% Similarity=0.408 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 99999998763421157667614801799999985206446799779860233557777766413886327872133222
Q gi|254780624|r 28 NMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEM 107 (265)
Q Consensus 28 ~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~M 107 (265)
+.|++-|++.|.+||....+ .+.+-+++++.+..... .+|||+|||||.++..+.+.. ++++|+|+|++|
T Consensus 7 ~~V~~~F~raA~~Yd~~A~~-----Q~~~a~~Ll~~l~~~~~--~~vLDlGcGtG~~t~~l~~~~---~~v~~~Dls~~M 76 (251)
T PRK10258 7 QAIAAAFGRAAAHYEQHADL-----QRQSADALLAMLPQRKF--THVLDAGCGPGWMSRYWRERG---SQVTALDLSPPM 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCCCC--CCEEEEEEHHHHHHHHHHHCC---CEEEEEECCHHH
T ss_conf 99999998998658773699-----99999999973665789--939998310027899999749---969999598999
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHH
Q ss_conf 21111000001122222222222333457554467403664201321344320121000485211776305544551011
Q gi|254780624|r 108 LSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFK 187 (265)
Q Consensus 108 l~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~ 187 (265)
|+.|+++. ....|+++|+|+|||++++||+|+|++++++++|++.+|+|++|+|||||.+++ +++....+.
T Consensus 77 l~~a~~~~------~~~~~~~~D~e~Lp~~~~sfDli~S~~~lqW~~d~~~~l~e~~rvLkPgG~l~f---st~g~~tl~ 147 (251)
T PRK10258 77 LAQARQKD------AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAF---TTLVQGSLP 147 (251)
T ss_pred HHHHHHHC------CCHHHHHCHHHHCCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHCCCCCEEEE---ECCCCCCHH
T ss_conf 99998748------633435360630999878821785504045259999999999964589949999---815757689
Q ss_pred HH
Q ss_conf 23
Q gi|254780624|r 188 KI 189 (265)
Q Consensus 188 ~~ 189 (265)
.+
T Consensus 148 EL 149 (251)
T PRK10258 148 EL 149 (251)
T ss_pred HH
T ss_conf 99
No 11
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=99.96 E-value=2.8e-29 Score=208.79 Aligned_cols=201 Identities=21% Similarity=0.319 Sum_probs=148.3
Q ss_pred HHHHHHHHH-HHH---HHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 998763421-157---6676148017999999852064467997798602335577777664138863278721332222
Q gi|254780624|r 33 VFSRVSHRY-DVM---NDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML 108 (265)
Q Consensus 33 ~F~~iA~~Y-D~~---N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml 108 (265)
-|+++|... |.- .-+-++..-|. ..+.+.+.+ -++.+|||||||+|.++..+++.. ++|+|||+|++++
T Consensus 11 ~F~~la~~WWd~~g~~~~Lh~~N~~R~--~~i~~~~~~--l~G~~ILDVGCGgG~lse~LAr~G---a~VtGID~S~~~I 83 (233)
T PRK05134 11 KFSALAARWWDPNGEFKPLHRINPLRL--NYIREHAGG--LFGKRVLDVGCGGGILSESMARLG---ATVTGIDASEENI 83 (233)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHH--HHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHH
T ss_conf 999889984799999607888369999--999975146--689989997558971128999679---9799987998999
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHH
Q ss_conf 11110000011222222222223334-57554467403664201321344320121000485211776305544551011
Q gi|254780624|r 109 SVGRDRAFKENLQDCITFIEANAETL-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFK 187 (265)
Q Consensus 109 ~~a~~r~~~~~~~~~i~~~~~da~~l-p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~ 187 (265)
+.||+++.+.++ +|+|.+++++++ +..+++||+|+|.-.|+|++|++.+++++.|+|||||.++ ++++...+.+
T Consensus 84 ~~Ar~ha~~~~l--~i~y~~~~~e~l~~~~~~~FDvV~~~EVlEHV~d~~~~l~~~~rlLKPGG~l~---lsTiNrt~~S 158 (233)
T PRK05134 84 EVARLHALESGL--KIDYRQITAEELAAEHPGQFDVVTCMEMLEHVPDPASFIRACAKLVKPGGLVF---FSTLNRNLKS 158 (233)
T ss_pred HHHHHHHHHCCC--CCEEEECCHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEE---EECCCCCHHH
T ss_conf 999998564434--51167514766543057863477442147753899999999999738991499---9726789899
Q ss_pred HHHHH----HHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC-------------CEE
Q ss_conf 23456----5311133210254288768657899999689989999999975995379998556-------------649
Q gi|254780624|r 188 KIYDM----WSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN-------------GVV 250 (265)
Q Consensus 188 ~~~~~----y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~-------------Gi~ 250 (265)
.+... |...++| ...+.| ..|.+|+|+..+++++||+....+.+++ .+.
T Consensus 159 ~l~~i~~AEyil~~vP-------~gTH~w-------~kFi~P~el~~~l~~~~~~~~~~~G~~ynp~~~~w~~~~~~~vN 224 (233)
T PRK05134 159 YLLAIVGAEYILRMLP-------KGTHDY-------KKFIKPSELAAWLRQAGLEVQDIKGLTYNPLTNRWKLSDDVDVN 224 (233)
T ss_pred HHHHHHHHHHHHCCCC-------CCCCCH-------HHCCCHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEECCCCCCC
T ss_conf 9999999988860499-------998586-------66799999999999879957210007996567938988999814
Q ss_pred EEEEEEEEC
Q ss_conf 999998116
Q gi|254780624|r 251 ALHSGWKCE 259 (265)
Q Consensus 251 ~i~~g~Kp~ 259 (265)
.+..+.||.
T Consensus 225 Y~~~~~K~~ 233 (233)
T PRK05134 225 YMLAARKPA 233 (233)
T ss_pred EEEEEECCC
T ss_conf 589987189
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.96 E-value=1.1e-28 Score=205.05 Aligned_cols=171 Identities=20% Similarity=0.341 Sum_probs=136.5
Q ss_pred HHHHC-CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 67614-80179999998520644679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 46 DLMSL-GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 46 ~~~S~-G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
.|+|- |.+.. +.+++.+...++ .+|||||||.|-.++.|++.++ ++|+|+|+|+.|++.|++|... ..++
T Consensus 31 Gf~SpGG~e~~--~~~l~~l~L~~~--~kVLDvGCG~GG~a~~LA~~yg--~~V~GiDls~~~~~~A~er~~~---~~~v 101 (263)
T PTZ00098 31 DYISSGGIEAT--KKILSDIELDAN--SKVLDIGSGLGGGCKYINEKYG--AHTHGIDICEKIVNIAKERNQD---KAKI 101 (263)
T ss_pred CCCCCCCHHHH--HHHHHCCCCCCC--CEEEEECCCCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHCCC---CCCE
T ss_conf 98899956899--999850488999--8688868887889999999749--8799985889999999985512---5854
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 222222333457554467403664201321--344320121000485211776305544551011234565311133210
Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265)
Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265)
+|.++|+..+||+|+|||+|.+--++-|+| |+++.++|++|||||||++++.|....+....+.-+..|...
T Consensus 102 ~f~~~d~~~~~f~d~sFDvV~S~dailHip~~DK~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~------ 175 (263)
T PTZ00098 102 EFEAKDILKKDFPENNFDLIYSRDAILHLSLADKKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAYIKK------ 175 (263)
T ss_pred EEEECCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHH------
T ss_conf 89967853677886745589875022308824399999999998468878999750135789973989999984------
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 25428876865789999968998999999997599537999855
Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265)
Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265)
+ .| .+.+++++.++|+++||.+|+..+.+
T Consensus 176 r-------~~--------~l~s~~~Y~~~l~~aGF~~v~~~Drt 204 (263)
T PTZ00098 176 R-------KY--------TLIPIEEYADIIKACKFKNVEAKDIS 204 (263)
T ss_pred C-------CC--------CCCCHHHHHHHHHHCCCCEEEEECCH
T ss_conf 6-------87--------66799999999997799667875142
No 13
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=99.94 E-value=8.2e-28 Score=199.38 Aligned_cols=189 Identities=24% Similarity=0.420 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC---CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 98763421157667614801799999985206446---799779860233557777766413886327872133222211
Q gi|254780624|r 34 FSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRK---SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSV 110 (265)
Q Consensus 34 F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~---~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~ 110 (265)
|++.|++||..+.+ .|.-..++++.|.... .++.+|||+|||||.++..+.+.+ +..+++++|+|+.|+..
T Consensus 2 F~~A~~~Yd~~A~~-----Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~-~~~~~~a~D~~~~ml~~ 75 (272)
T TIGR02072 2 FSKAAKTYDRHAKI-----QREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRF-PQAELIALDISEEMLAQ 75 (272)
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHC-CCCEEHHHHCCHHHHHH
T ss_conf 20115205666799-----9999999999887407654455435651268548999999868-80012333325678999
Q ss_pred CCCCHH----CCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf 110000----011222222222223334575544--67403664201321344320121000485211776305544551
Q gi|254780624|r 111 GRDRAF----KENLQDCITFIEANAETLPFEANS--FDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265)
Q Consensus 111 a~~r~~----~~~~~~~i~~~~~da~~lp~~d~s--fD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265)
|+++.. ... ..++.|++||+|.+|+.+++ ||+|+|+-+|.++.|+.++|+|++|+|||||.++ ||+.-..
T Consensus 76 a~~~~~~GWW~~~-~~~~~f~~gD~E~l~~~~~~~~~DLI~Sn~a~QW~~~~~~~l~~l~~~lk~gG~l~---FStf~~~ 151 (272)
T TIGR02072 76 AKEKLSEGWWQKN-LKAVQFICGDIEKLPLEDSSFKFDLIVSNLALQWCDDLSQALSELARVLKPGGLLA---FSTFGPG 151 (272)
T ss_pred HHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEE---EEECCCH
T ss_conf 9974467886576-04566666377717887663034127563588710478899999997528796899---8613541
Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0112345653111332102542887686578999996899899999999759953799985
Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~ 245 (265)
.+..+.+.+.. +++.| |... -...|++.+++..+|.+.||+.+..+.-
T Consensus 152 ~l~El~~~~~~-----~~~~I--D~~~------~~~~y~~~~~~~~~l~~~~f~~~~~~~~ 199 (272)
T TIGR02072 152 TLKELRQSFGQ-----VSELI--DERS------HGLRYLSLDELKALLKNDGFELLKLEEE 199 (272)
T ss_pred HHHHHHHHHHH-----HHHHH--CCCC------CCCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 34999999999-----99740--7654------6789989899999986159841578886
No 14
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.94 E-value=7.1e-28 Score=199.75 Aligned_cols=106 Identities=28% Similarity=0.334 Sum_probs=100.2
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 79860233557777766413886327872133222211110000011222222222223334575544674036642013
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRN 152 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~ 152 (265)
+|||+|||+|..+..++++++ .++|+|+|+|++|++.|++++.+.++..+|.+.++|++++||+| +||+|++..+++|
T Consensus 2 rVLDiGCG~G~~~~~LA~~~p-~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d-~FD~V~s~evl~H 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEVIHH 79 (224)
T ss_pred EEEEEECCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC-CCCEEEHHHHHHC
T ss_conf 089983668888999999779-98899997999999999999997299865147852110399999-8356768535765
Q ss_pred CHHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 2134432012100048521177630554
Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
++|++++|+|++|||||||++++.||-.
T Consensus 80 i~D~~~~l~ei~RvLKPGG~lviaD~~~ 107 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 3999999999998717984999998533
No 15
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=99.93 E-value=3.1e-26 Score=189.18 Aligned_cols=158 Identities=22% Similarity=0.344 Sum_probs=130.7
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCC----CCCCCCCCCCCCCCC---CCCCC
Q ss_conf 977986023355777776641388632-7872133222211110000011222----222222223334575---54467
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQD----CITFIEANAETLPFE---ANSFD 142 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~----~i~~~~~da~~lp~~---d~sfD 142 (265)
+.+|||||||.|.+|..||+.. +. |+|||.|+++|+.||..+++.++.. .|+|.+.++|++.-+ ..+||
T Consensus 85 G~~vLDVGCGGGlLsE~lAR~G---a~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~FD 161 (275)
T TIGR01983 85 GLRVLDVGCGGGLLSEPLARLG---ANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKSFD 161 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9779984278578889997558---8425775211779999998887334023311114544430788730557841573
Q ss_pred CCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHH----HHHCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 40366420132134432012100048521177630554455101123456----53111332102542887686578999
Q gi|254780624|r 143 ACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDM----WSFKVIPQLGRFIAGDEEPYQYLIES 218 (265)
Q Consensus 143 ~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~----y~~~iiP~~g~~~~~~~~~Y~yL~~S 218 (265)
+|||.-.|.||+|++..++.+..+|||||.+. ||+....+.++++.+ |..++|| +.-+.|
T Consensus 162 ~V~~mEvlEHV~dp~~f~~~c~~llkPgG~lF---~STINRt~kS~~~aIvgAEYiLr~vP-------KGTH~~------ 225 (275)
T TIGR01983 162 VVTCMEVLEHVPDPQAFIKACAQLLKPGGILF---FSTINRTPKSYLLAIVGAEYILRWVP-------KGTHDW------ 225 (275)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCCCEE---EECCCHHHHHHHHHHHHHHHHHHCCC-------CCCCCC------
T ss_conf 37643200002788899999998508998489---73000218999999999999851689-------872471------
Q ss_pred HHHCCCHHHHHHHHH----HCCCCEEEEEECCCC
Q ss_conf 996899899999999----759953799985566
Q gi|254780624|r 219 IRRFPNQQDFAAVIS----AAGFSNVSFTNYTNG 248 (265)
Q Consensus 219 i~~f~~~~el~~~l~----~aGF~~v~~~~~~~G 248 (265)
..|.+|+||.++|+ ++|++.-..+-+++.
T Consensus 226 -~KFi~P~EL~~~l~d~N~~~~l~~~~~~G~~Yn 258 (275)
T TIGR01983 226 -EKFIKPSELTSWLEDDNRSAGLRVKDVKGLVYN 258 (275)
T ss_pred -CCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEE
T ss_conf -015387999999851264676489975050763
No 16
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.91 E-value=1.2e-23 Score=172.47 Aligned_cols=172 Identities=14% Similarity=0.154 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC
Q ss_conf 34211576676148017999999852064467997798602335577777664138863278721332222111100000
Q gi|254780624|r 38 SHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK 117 (265)
Q Consensus 38 A~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~ 117 (265)
+..|.+..+. -..|-..++..+.+..+ .+|||+|||||.++..++++. +.++|+|+|.|++||+.|+++.
T Consensus 6 p~~Y~rf~~~-----r~rp~~DLl~~l~~~~~--~~vlDlGCG~G~~t~~l~~r~-p~a~v~GiD~S~~Ml~~Ar~~~-- 75 (252)
T PRK01683 6 PSLYLQFEAE-----RTRPAVELLARVPLENV--EYVADLGCGPGNSTALLHQRW-PAARITGIDSSPAMLAEARQAL-- 75 (252)
T ss_pred HHHHHHHHHH-----HHCHHHHHHHCCCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHC--
T ss_conf 9999988877-----64639999841888899--989993774989999999977-9987999989899999999758--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf 11222222222223334575544674036642013213443201210004852117763055445510112345653111
Q gi|254780624|r 118 ENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKV 197 (265)
Q Consensus 118 ~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~i 197 (265)
++++|.++|+++++. +++||+|+|.-+||+++|.++++.++.|+|||||++++- + |.|.. ...+. +
T Consensus 76 ----~~~~f~~~D~~~~~~-~~~~D~ifSNaalhW~~d~~~~~~~~~~~L~PGG~la~Q-~--p~n~~-~~sh~-----l 141 (252)
T PRK01683 76 ----PDCQFVEADIRNWQP-EQALDLIYANASLQWLPDHYELFPHLVSLLAPQGVLAVQ-M--PDNWL-EPSHV-----L 141 (252)
T ss_pred ----CCCEEEECCHHCCCC-CCCCCEEEEEEEHHHCCCHHHHHHHHHHHCCCCCEEEEE-C--CCCCC-CHHHH-----H
T ss_conf ----998387250420787-678788956100450787799999999824878799998-8--98757-69999-----9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
Q ss_conf 33210254288768657899999689989999999975995379
Q gi|254780624|r 198 IPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265)
Q Consensus 198 iP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265)
+.-+++ ...|.. ..-..+++++++..+|..+||+ |+
T Consensus 142 ~~e~a~-----~~~~~~--~~~~~~~~~~~Y~~lL~~~g~~-v~ 177 (252)
T PRK01683 142 MREVAW-----EQNYPD--RGREPLLGVHAYYDLLAEAGCE-VD 177 (252)
T ss_pred HHHHHH-----HHHCCC--CCCCCCCCHHHHHHHHHHCCCE-EE
T ss_conf 999986-----654240--1366789989999999857873-66
No 17
>PRK11036 putative metallothionein SmtA; Provisional
Probab=99.88 E-value=5.1e-23 Score=168.50 Aligned_cols=194 Identities=19% Similarity=0.315 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 998763421157667614801-------7999999852064467997798602335577777664138863278721332
Q gi|254780624|r 33 VFSRVSHRYDVMNDLMSLGLH-------RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINN 105 (265)
Q Consensus 33 ~F~~iA~~YD~~N~~~S~G~~-------r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~ 105 (265)
.||.||.++-+ .+ .|.. ..|+ .+-..+...++.+.+|||+|||+|.++..+|++. .+|+++|+|+
T Consensus 5 nFd~ia~kF~~--~i--Ygt~KG~iR~avl~~-dl~~~l~~l~~~plrVLDvG~G~G~~a~~lA~~G---h~Vt~~D~S~ 76 (256)
T PRK11036 5 NFDDIAEKFSR--NI--YGTTKGQIRQAIVWQ-DLDRLLAELGPRPLRVLDAGGGEGQTAIKMAELG---HQVTLCDLSA 76 (256)
T ss_pred CHHHHHHHHHH--HC--CCCCCHHHHHHHHHH-HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCC---CEEEEECCCH
T ss_conf 46678999998--45--477722899999999-9999998469999839983798779899999779---9799866999
Q ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf 222111100000112222222222233345-7554467403664201321344320121000485211776305544551
Q gi|254780624|r 106 EMLSVGRDRAFKENLQDCITFIEANAETLP-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265)
Q Consensus 106 ~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265)
+||+.|++++.+.+...+++|+++++++++ ..+++||+|+|--.|++++||..+++.+.++|||||.+.++=++. ...
T Consensus 77 ~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlcHaVLE~v~dP~~~l~~l~~~lkPGG~lSLmfyN~-~al 155 (256)
T PRK11036 77 EMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA-NGL 155 (256)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCH-HHH
T ss_conf 9999999998864966127988568998854236886678651367723789999999999758993799984285-169
Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 01123456531113321025428876865789999968998999999997599537999
Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265)
.++.+..-=+.++.. .+..+++. -|.. ..-.+++++.++++++||+.+.+.
T Consensus 156 v~~n~l~Gnf~~a~~---~~~~~~~~---~LtP--~~p~~p~~V~~~l~~~g~~i~~~~ 206 (256)
T PRK11036 156 LMHNMVAGNFDYVQA---GMPKRKKR---TLSP--QYPRDPAQVYQWLEEAGWQIMGKT 206 (256)
T ss_pred HHHHHHHCCHHHHHH---HCCCCCCC---CCCC--CCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 999998258999973---06344552---1689--999999999999997798277667
No 18
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=99.88 E-value=1.2e-22 Score=166.02 Aligned_cols=188 Identities=18% Similarity=0.305 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHCCCHH-------HH--------------HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC
Q ss_conf 87634211576676148017-------99--------------9999852064467997798602335577777664138
Q gi|254780624|r 35 SRVSHRYDVMNDLMSLGLHR-------FW--------------KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD 93 (265)
Q Consensus 35 ~~iA~~YD~~N~~~S~G~~r-------~W--------------r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~ 93 (265)
..|+.+||.-|+|.++=+++ .| -+.+++.+.+++| .+|||||||-|.++..+++.++
T Consensus 8 ~nI~~HYDl~ndFy~~~Ld~~m~YSca~f~~~~~tLe~AQ~~Kl~~i~~~l~l~~g--~~vLDiGCGWG~~a~~~a~~~g 85 (273)
T pfam02353 8 ENIQAHYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKPG--MTLLDIGCGWGGLMRRAAERYD 85 (273)
T ss_pred HHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEEECCCCHHHHHHHHHHCC
T ss_conf 99999758988999987696998865571799999999999999999986588999--9899978880899999998479
Q ss_pred CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCC
Q ss_conf 863278721332222111100000112222222222233345755446740366420132--134432012100048521
Q gi|254780624|r 94 NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGG 171 (265)
Q Consensus 94 ~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG 171 (265)
++|+|+.+|+++.+.|++|+++.++..+|++..+|..++ +++||.|++--.+.|+ .+.+..++++.|+|||||
T Consensus 86 --~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~---~~~fD~IvSiem~Ehvg~~~~~~~f~~i~~~LkpgG 160 (273)
T pfam02353 86 --VNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF---DEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGG 160 (273)
T ss_pred --CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC---CCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf --518999797899999999998708743212000626547---666666776516876287779999999998658897
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 17763055445510112345653111332102542887686578999996899899999999759953799985
Q gi|254780624|r 172 RLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 172 ~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~ 245 (265)
+++|.-++.++...... ...-.+++.+.|-.. -..|+.+++...++++||+...+.++
T Consensus 161 ~~~iq~i~~~~~~~~~~-----~~~~~~fi~kyIFPG-----------G~lPs~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T pfam02353 161 LMLLHTITGLHPDETSE-----RGLPLKFIDKYIFPG-----------GELPSISMIVESSSEAGFTVEDVESL 218 (273)
T ss_pred EEEEEEEECCCCCCHHH-----CCCCCCHHHHHCCCC-----------CCCCCHHHHHHHHHHCCCEEEEEEEC
T ss_conf 39999994257321010-----277420077760799-----------87899999999998689488676767
No 19
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.87 E-value=6.6e-22 Score=161.31 Aligned_cols=198 Identities=21% Similarity=0.322 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHCCC-CCCCCEEEECCHHHHHHHHHH
Q ss_conf 9899999999999876342115766761------------480179999998520644-679977986023355777776
Q gi|254780624|r 22 PEEEKQNMVNHVFSRVSHRYDVMNDLMS------------LGLHRFWKEAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRI 88 (265)
Q Consensus 22 ~~~~k~~~v~~~F~~iA~~YD~~N~~~S------------~G~~r~Wr~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l 88 (265)
..++++..|+.+||+.|- |.=+++.| -|-++. +..++++|... ...+.+|||+|||||.++..+
T Consensus 5 ~y~~~r~~v~~YFd~ta~--~~W~rltsd~pVs~vr~tVR~Gr~~m-r~~~l~wl~~~~dl~G~rVLDaGCGtG~la~~L 81 (230)
T PRK07580 5 NYLEHKSEVRTYFNGTGF--DRWARIYSDAPVSKVRATVRAGHQRM-RDTVLSWLPADGDLTGLSILDAGCGTGSLSIPL 81 (230)
T ss_pred CHHHHHHHHHHHHCCHHH--HHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 788999999998464789--99999708897259999999769999-999999731059978998988187867879999
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHH
Q ss_conf 641388632787213322221111000001122222222222333457554467403664201321--344320121000
Q gi|254780624|r 89 AEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRI 166 (265)
Q Consensus 89 ~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~Rv 166 (265)
+++. ++|+|+|+|+.|++.|++|+.+.+...+|+|..+|.+.+ .++||.|+|..+|.|+| |...++.++..
T Consensus 82 A~~G---a~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~~---~G~FD~Vv~mdvLiHYp~~d~~~~l~~la~- 154 (230)
T PRK07580 82 ARRG---AKVVASDISPQMVEEARERAPEAGLDGNITFEVGDLESL---LGSFDTVVCLDVLIHYPQEDAERMLAHLAS- 154 (230)
T ss_pred HHCC---CEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC---CCCCCCHHHCCCEEECCHHHHHHHHHHHHH-
T ss_conf 9779---989998389999999997558627876753896676545---798660233371554578899999999972-
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 48521177630554455101123456531113321025428876865789999968998999999997599537999855
Q gi|254780624|r 167 LKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265)
Q Consensus 167 LKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265)
+.+|.+++- .-|.++++..++ .+|+++++...+-+ .....++.+...+.++||+..+.+..+
T Consensus 155 -~~~~~~ifT--fAP~T~lL~~m~---------~iGklFP~~drsp~------~~p~~~~~l~~~l~~~g~~v~r~~ri~ 216 (230)
T PRK07580 155 -LTRGSLIFT--FAPYTPLLALLH---------WIGGFFPGPSRTTR------IYPHREKGIRRALAEAGFKVVRTERIS 216 (230)
T ss_pred -CCCCEEEEE--ECCCCHHHHHHH---------HHHHHCCCCCCCCC------EEECCHHHHHHHHHHCCCEEEECCCCC
T ss_conf -558859999--689869999999---------98643899999972------697388999999996698675123325
Q ss_pred C
Q ss_conf 6
Q gi|254780624|r 247 N 247 (265)
Q Consensus 247 ~ 247 (265)
.
T Consensus 217 ~ 217 (230)
T PRK07580 217 S 217 (230)
T ss_pred C
T ss_conf 6
No 20
>KOG4300 consensus
Probab=99.86 E-value=5.5e-22 Score=161.81 Aligned_cols=187 Identities=18% Similarity=0.286 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HCCCCCCCCEEEECCHHHHHHHHHHHHHCC--CCCEEEEECCCC
Q ss_conf 999987634211576676148017999999852---064467997798602335577777664138--863278721332
Q gi|254780624|r 31 NHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTN---LNPRKSKDYRVLDVAGGTGDVAFRIAEASD--NRSQIVVADINN 105 (265)
Q Consensus 31 ~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~---l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~--~~~~v~giD~s~ 105 (265)
..++|++|..|- +.+... +..+.++ ..+|+||||||.. -+.++ +..+|+++|+++
T Consensus 50 t~~yne~~~~yk---------------relFs~i~~~~gk~~K-~~vLEvgcGtG~N----fkfy~~~p~~svt~lDpn~ 109 (252)
T KOG4300 50 TSIYNEIADSYK---------------RELFSGIYYFLGKSGK-GDVLEVGCGTGAN----FKFYPWKPINSVTCLDPNE 109 (252)
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHCCCCC-CCEEEECCCCCCC----CCCCCCCCCCEEEEECCCH
T ss_conf 999999999999---------------9998526877343575-1369961468888----5355578885689867848
Q ss_pred CCCCCCCCCHHCCCCCCCCC-CCCCCCCCCC-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 22211110000011222222-2222233345-755446740366420132134432012100048521177630554455
Q gi|254780624|r 106 EMLSVGRDRAFKENLQDCIT-FIEANAETLP-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 106 ~Ml~~a~~r~~~~~~~~~i~-~~~~da~~lp-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
+|-++|.+++.+.. +.++. |+++++|+|| ++|.|+|+|+++|+|..+.|+.++|+|+.|+|||||+++++|-...+.
T Consensus 110 ~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y 188 (252)
T KOG4300 110 KMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY 188 (252)
T ss_pred HHHHHHHHHHHHCC-CCCEEEEEEECHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 79999998886425-72057778505210742136771157778887205779999999887508895899972124421
Q ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEE
Q ss_conf 101123456531113321025428876865789999968998999999997599537999855664999999
Q gi|254780624|r 184 PVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSG 255 (265)
Q Consensus 184 ~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g 255 (265)
..+..+++.+.... |++.. .-.....+..+.|++|-|+.++-+.+.+|.--.+++
T Consensus 189 ~~~n~i~q~v~ep~--------------~~~~~---dGC~ltrd~~e~Leda~f~~~~~kr~~~~ttw~~V~ 243 (252)
T KOG4300 189 GFWNRILQQVAEPL--------------WHLES---DGCVLTRDTGELLEDAEFSIDSCKRFNFGTTWVIVE 243 (252)
T ss_pred HHHHHHHHHHHCHH--------------HHEEC---CCEEEEHHHHHHHHHCCCCCCHHHCCCCCCEEEEEE
T ss_conf 08999999874556--------------65023---445876457777553304411110026883489973
No 21
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.8e-21 Score=158.44 Aligned_cols=185 Identities=19% Similarity=0.290 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHH---------------------HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 998763421157667614801799---------------------99998520644679977986023355777776641
Q gi|254780624|r 33 VFSRVSHRYDVMNDLMSLGLHRFW---------------------KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEA 91 (265)
Q Consensus 33 ~F~~iA~~YD~~N~~~S~G~~r~W---------------------r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~ 91 (265)
-...|..+||.-|+|.++.+++.+ .+.+.+.+.+++| ++|||+|||-|.++..+++.
T Consensus 16 ~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~ 93 (283)
T COG2230 16 AAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEE 93 (283)
T ss_pred HHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEEECCCHHHHHHHHHHH
T ss_conf 4452066750656899986289876245775799888589999999999975699999--98987478844999999998
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCC
Q ss_conf 3886327872133222211110000011222222222223334575544674036642013213--44320121000485
Q gi|254780624|r 92 SDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKC 169 (265)
Q Consensus 92 ~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKp 169 (265)
++ ++|+|+++|++|++.+++|+.+.++..+|+++..|-.+++ +.||.|++.-.++||.. .+..++.++++|+|
T Consensus 94 y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 94 YG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred CC--CEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC---CCCCEEEEHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf 49--9799966899999999999997599766079965621032---434205560068873710289999999964599
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 211776305544551011234565311133210254288768657899999689989999999975995379998
Q gi|254780624|r 170 GGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTN 244 (265)
Q Consensus 170 GG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~ 244 (265)
||+++++.++.++.+.. . ..+++-+.|..+. ..|+..++.....++||....+++
T Consensus 169 ~G~~llh~I~~~~~~~~--~-------~~~~i~~yiFPgG-----------~lPs~~~i~~~~~~~~~~v~~~~~ 223 (283)
T COG2230 169 GGRMLLHSITGPDQEFR--R-------FPDFIDKYIFPGG-----------ELPSISEILELASEAGFVVLDVES 223 (283)
T ss_pred CCEEEEEEECCCCCCCC--C-------CHHHHHHHCCCCC-----------CCCCHHHHHHHHHHCCCEEEHHHH
T ss_conf 96599999667885544--3-------3278998578998-----------489779999988756868842764
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.84 E-value=2.3e-21 Score=157.85 Aligned_cols=160 Identities=19% Similarity=0.275 Sum_probs=123.3
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
.+.+|||+|||.|.++..+|+.. +.|+|+|+|+.++++|+.++.+.+. +|+|.+..+|++....++||+|+|.-.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHCCCCCCEEEEHHH
T ss_conf 77708874588328649999779---9469743876778999875442463--225223329999724897448977358
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 01321344320121000485211776305544551011234565311133210254288768657899999689989999
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFA 229 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~ 229 (265)
|+|++|++.+++++.+.+||||.+. +|++...+...+.-... .-.+.+++.+..+. .+.|..++|+.
T Consensus 134 lEHv~dp~~~~~~c~~lvkP~G~lf---~STinrt~ka~~~~i~~---ae~vl~~vP~gTH~-------~~k~irp~El~ 200 (243)
T COG2227 134 LEHVPDPESFLRACAKLVKPGGILF---LSTINRTLKAYLLAIIG---AEYVLRIVPKGTHD-------YRKFIKPAELI 200 (243)
T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEE---EECCCCCHHHHHHHHHH---HHHHHHHCCCCCHH-------HHHHCCHHHHH
T ss_conf 7716999999999998629992899---94201388999999998---99998745886335-------88861989998
Q ss_pred HHHHHCCCCEEEEEECCC
Q ss_conf 999975995379998556
Q gi|254780624|r 230 AVISAAGFSNVSFTNYTN 247 (265)
Q Consensus 230 ~~l~~aGF~~v~~~~~~~ 247 (265)
.++..+|+.....+.+++
T Consensus 201 ~~~~~~~~~~~~~~g~~y 218 (243)
T COG2227 201 RWLLGANLKIIDRKGLTY 218 (243)
T ss_pred HHCCCCCCEEEEECCEEE
T ss_conf 732357935885034265
No 23
>KOG1270 consensus
Probab=99.82 E-value=1.1e-20 Score=153.33 Aligned_cols=197 Identities=17% Similarity=0.299 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHH-HH---HHHHHHCCCHHH-H-HHHHHHHHCC-CCC----CCCEEEECCHHHHHHHHHHHHHCCCCCE
Q ss_conf 9999998763421-15---766761480179-9-9999852064-467----9977986023355777776641388632
Q gi|254780624|r 29 MVNHVFSRVSHRY-DV---MNDLMSLGLHRF-W-KEAMVTNLNP-RKS----KDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265)
Q Consensus 29 ~v~~~F~~iA~~Y-D~---~N~~~S~G~~r~-W-r~~~i~~l~~-~~~----~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265)
.|+. |...|... |. .-.+=|++..|. | ++..++..+. .++ .+.+|||+|||+|.+++.|++.. +.
T Consensus 38 eV~~-f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg---a~ 113 (282)
T KOG1270 38 EVKK-FQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG---AQ 113 (282)
T ss_pred HHHH-HHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC---CE
T ss_conf 8999-8875434465445111245446433267788787404322887545578647872367550232357508---85
Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCE
Q ss_conf 7872133222211110000011222-----22222222333457554467403664201321344320121000485211
Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQD-----CITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGR 172 (265)
Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~-----~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~ 172 (265)
|+|+|+|+.|++.|+++........ +++|.+.|+|.+.- .||+|+|+-.++|+.|++..++-+.+.|||||+
T Consensus 114 V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~---~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270 114 VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG---KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred EEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHCCC---CCCEEEEHHHHHHHHCHHHHHHHHHHHHCCCCC
T ss_conf 68526559999999875104903305641463020153321456---564544198999874789999999998488982
Q ss_pred EEEEECCCCCCCHH-HHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 77630554455101-123456531113321025428876865789999968998999999997599537999855
Q gi|254780624|r 173 LLVLEFSEVQGPVF-KKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265)
Q Consensus 173 ~~i~df~~p~~~~~-~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265)
+.|.+..+.--.++ .-++.-|..+++|.= .+ .| +.|++++++..++..+|+....+...+
T Consensus 191 lfittinrt~lS~~~~i~~~E~vl~ivp~G-------th--~~-----ekfi~p~e~~~~l~~~~~~v~~v~G~~ 251 (282)
T KOG1270 191 LFITTINRTILSFAGTIFLAEIVLRIVPKG-------TH--TW-----EKFINPEELTSILNANGAQVNDVVGEV 251 (282)
T ss_pred EEEEEHHHHHHHHHCCCCHHHHHHHHCCCC-------CC--CH-----HHCCCHHHHHHHHHHCCCCHHHHHCCC
T ss_conf 586411233777622112999988645888-------75--77-----870899999999986385343120202
No 24
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.82 E-value=4.8e-21 Score=155.74 Aligned_cols=95 Identities=38% Similarity=0.610 Sum_probs=86.3
Q ss_pred EECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
Q ss_conf 86023355777776641388632787213322221111000001122222222222333457554467403664201321
Q gi|254780624|r 75 LDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP 154 (265)
Q Consensus 75 LDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~ 154 (265)
||+|||+|..+..+++. +..+++|+|+|+.|++.|+++... .+++++++|++++|+++++||+|++..+++|++
T Consensus 1 LDiGcG~G~~~~~l~~~--~~~~v~giD~s~~~i~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~I~~~~~l~~~~ 74 (95)
T pfam08241 1 LDVGCGTGLLTEALARL--PGAQVTGVDLSPEMLALARKRAQE----DGLTFVVGDAEDLPFPDESFDVVVSSLVLHHLP 74 (95)
T ss_pred CCCCCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHCCC----CCCEEEEECCCCCCCCCCCCCEEEECCCHHHCC
T ss_conf 96462499999999845--799999994978998776631026----694799803324675545685999833066468
Q ss_pred HHHHHHCCCCHHCCCCCEEEE
Q ss_conf 344320121000485211776
Q gi|254780624|r 155 HITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 155 d~~~~l~e~~RvLKpGG~~~i 175 (265)
|++++++|++|+|||||+++|
T Consensus 75 ~~~~~l~~~~r~LkpgG~l~i 95 (95)
T pfam08241 75 DPERALREIARVLKPGGKLVI 95 (95)
T ss_pred CHHHHHHHHHHHCCCCEEEEC
T ss_conf 999999999987786949979
No 25
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.78 E-value=2.8e-20 Score=150.85 Aligned_cols=98 Identities=24% Similarity=0.332 Sum_probs=82.8
Q ss_pred EECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH
Q ss_conf 86023355777776641388632787213322221111000001122222222222333457554467403664201321
Q gi|254780624|r 75 LDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP 154 (265)
Q Consensus 75 LDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~ 154 (265)
||+|||||.++..+++..+ .++|+|+|+|+.|++.|+++....+......+........++++++||+|++.++++|++
T Consensus 1 LDvGcG~G~~~~~l~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vl~~~~ 79 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALP-GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNVLHHLA 79 (98)
T ss_pred CCCCCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEECCCHHHCC
T ss_conf 9886337999999998789-988999859889999999999871345311100000002220358988996104177258
Q ss_pred HHHHHHCCCCHHCCCCCEE
Q ss_conf 3443201210004852117
Q gi|254780624|r 155 HITLVLQEIYRILKCGGRL 173 (265)
Q Consensus 155 d~~~~l~e~~RvLKpGG~~ 173 (265)
|++++++|++|+|||||++
T Consensus 80 ~~~~~l~~~~r~LkpgG~l 98 (98)
T pfam08242 80 DPRAVLRNLRRLLKPGGVL 98 (98)
T ss_pred CHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999974999899
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=99.78 E-value=1.7e-19 Score=145.77 Aligned_cols=195 Identities=21% Similarity=0.336 Sum_probs=136.3
Q ss_pred HHHHHHHHHHH-----HHH-HHHHHHHH---CCCHHHHHHHHHHHHCCC-CCCCCEEEECCHHHHHHHHHHHHHCCCCCE
Q ss_conf 99999998763-----421-15766761---480179999998520644-679977986023355777776641388632
Q gi|254780624|r 28 NMVNHVFSRVS-----HRY-DVMNDLMS---LGLHRFWKEAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265)
Q Consensus 28 ~~v~~~F~~iA-----~~Y-D~~N~~~S---~G~~r~Wr~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265)
+.|+.+||+-| .-| |..|.+=+ .|-+.. ++.++.+|..- +..+.||||.|||||.++..||+.. ++
T Consensus 3 ~~v~~YFd~~af~rW~~i~~~~vs~~r~~vR~Gr~~~-~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~G---A~ 78 (224)
T TIGR02021 3 EQVRHYFDGTAFQRWARIYGDPVSRVRQTVREGRAAM-REKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRG---AI 78 (224)
T ss_pred CCHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCC---CE
T ss_conf 3021024873889999871673047899999769999-9999985467889876777755889315449888479---86
Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEE
Q ss_conf 78721332222111100000112222-2222222333457554467403664201321--34432012100048521177
Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDC-ITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~-i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~ 174 (265)
|.|+|||+.|++.|++|........| |+|..+|.+.+.. +.||.|+|-=+|=|.| |..++|..+.-..|. +++
T Consensus 79 V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~~--G~fD~VV~mDvlIHYp~~d~~~~l~~Laslt~~--~~~ 154 (224)
T TIGR02021 79 VKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLEL--GKFDAVVAMDVLIHYPAEDIAKALEHLASLTKE--RVI 154 (224)
T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCC--CCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHCC--CEE
T ss_conf 8662376899999986210021016700354530444138--985556752122320222279999998874358--648
Q ss_pred EEECC-CCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCEEEEEECCCC
Q ss_conf 63055-44551011234565311133210254288768657899999689989999999975----9953799985566
Q gi|254780624|r 175 VLEFS-EVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAA----GFSNVSFTNYTNG 248 (265)
Q Consensus 175 i~df~-~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~a----GF~~v~~~~~~~G 248 (265)
|| -|.+.++..++ .+|+++++...+= ....+...++...|.+. |++.++.+..|.|
T Consensus 155 ---ftfAP~T~~l~~~~---------~IG~lFP~s~R~t------~~~~h~~~~~~R~l~~~eallG~~i~~~~~vS~g 215 (224)
T TIGR02021 155 ---FTFAPKTAYLAFLK---------AIGELFPRSDRAT------AIYLHPEKDLERALGELEALLGWKISKEGRVSTG 215 (224)
T ss_pred ---EEECCCCHHHHHHH---------HHHHCCCCCCCCC------EEEECCCCHHHHHHHHHHHHHCCEEEEECCEEHH
T ss_conf ---98678767899999---------8510278898885------1520786038899766766633156631103224
No 27
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.76 E-value=2.3e-19 Score=144.94 Aligned_cols=101 Identities=30% Similarity=0.439 Sum_probs=87.6
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEEEEC
Q ss_conf 798602335577777664138863278721332222111100000112222222222233345-7554467403664201
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FEANSFDACTLAFGIR 151 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~d~sfD~V~~sf~l~ 151 (265)
||||+|||||..+..+++.. ..+++|+|+|+.|++.|+++....+ ..+++++++|+++++ +++++||+|++.+.++
T Consensus 1 rVLDiGcG~G~~~~~l~~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CEEEEECCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCC-CCCEEEECCCHHHCCHHHCCCEEEEEEECCEE
T ss_conf 99999888799999999568--9889999898889999999875327-88646714886788632057531999917501
Q ss_pred CC-HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 32-13443201210004852117763
Q gi|254780624|r 152 NM-PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 152 ~~-~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
|. +|+.+++++++|+|||||++++.
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~~~is 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 06518999999999874858199999
No 28
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=99.71 E-value=4.4e-18 Score=136.67 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=111.5
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEE
Q ss_conf 79977986023355777776641388632787213322221111000001122222222222333--4575544674036
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--LPFEANSFDACTL 146 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--lp~~d~sfD~V~~ 146 (265)
++++||||+|||.|.+...+.+. .+++++|+|++++++..|.+| .++.+++|++. .+|+|++||.|++
T Consensus 12 ~~~srVLDlGCG~G~ll~~L~~~--k~v~~~GvEid~~~v~~a~~k--------g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 12 PPGSRVLDLGCGDGSLLYLLQEE--KQVDGRGIELDAAGVAECVAK--------GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred CCCCEEEEECCCCCHHHHHHHHC--CCCCEEEECCCHHHHHHHHHC--------CCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 89698998368898999999876--698769833899999999864--------79545077445974577678037869
Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 64201321344320121000485211776305544551011234565311133210254288768657899999689989
Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQ 226 (265)
Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~ 226 (265)
+-.|.|+.+|+++|+||.|| |+++++ |.|...-++.-+++.+. |++-..+.-+|.|....=..|.+-.
T Consensus 82 s~vLqhl~~P~~vL~EmlRV---gk~~IV---SfPNf~hw~~R~~ll~~------GrmPvt~~lp~~WydTpnih~~Ti~ 149 (193)
T pfam07021 82 SQTLQATRNPREVLDELLRI---GRRAIV---SFPNFGHWRVRWSLLSR------GRMPVTDLLPYTWYDTPNIHFCTIR 149 (193)
T ss_pred HHHHHHHCCCHHHHHHHHHH---CCEEEE---EECCHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 87998752819999998512---686999---94361479999999947------8755589999761489984744599
Q ss_pred HHHHHHHHCCCCEEEEEEC
Q ss_conf 9999999759953799985
Q gi|254780624|r 227 DFAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 227 el~~~l~~aGF~~v~~~~~ 245 (265)
+++.++++.|++..+...+
T Consensus 150 DFe~lc~~~~i~I~~~~~l 168 (193)
T pfam07021 150 DFEELCEELNLKVEDRAAL 168 (193)
T ss_pred HHHHHHHHCCCEEEEEEEE
T ss_conf 9999999889989999997
No 29
>PRK06202 hypothetical protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=127.30 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=116.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCCHHCC
Q ss_conf 1576676148017999999852064467997798602335577777664138---8632787213322221111000001
Q gi|254780624|r 42 DVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD---NRSQIVVADINNEMLSVGRDRAFKE 118 (265)
Q Consensus 42 D~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~---~~~~v~giD~s~~Ml~~a~~r~~~~ 118 (265)
+++|++++ | ++..-+.+.+.+...+..+.+|||||||+|+++..+++... ...+|+|+|+++.+++.|++.....
T Consensus 35 ~~iN~~l~-g-~~~~~~~~~~~~~~~~~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~ 112 (233)
T PRK06202 35 RRINRISA-G-WRGLYRRHLRPALRAPDRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRR 112 (233)
T ss_pred HHHHHHHH-H-HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 99999986-4-299999999999758788728998347875799999999975599638999779889999998734036
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH--HHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 122222222222333457554467403664201321344--320121000485211776305544551011234565311
Q gi|254780624|r 119 NLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHIT--LVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFK 196 (265)
Q Consensus 119 ~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~--~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~ 196 (265)
.+.+...++..+++.+++||+|+|+-.|||++|.+ ..++++.+.-+ ..++|.|.-+ .-...++..
T Consensus 113 ----~~~~~~~~~d~l~~~~~~~DvV~~sl~LHHf~d~ql~~ll~~~~~~ar--~~vvinDL~R-------s~lay~~~~ 179 (233)
T PRK06202 113 ----GVTFRFAVSDELVAEGERFDVVYSNHFLHHLDDADVVRLLADMAALAR--RLVLHNDLIR-------SRLAYALAW 179 (233)
T ss_pred ----CCCEEEEEHHHHCCCCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHCC--EEEEECCCCC-------CHHHHHHHH
T ss_conf ----983699734320245788757603246864982999999999998638--2699746532-------765899999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 13321025428876865789999968998999999997599537999
Q gi|254780624|r 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 197 iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265)
.+.++++.++-...==+-||+...++.|+..+..+ |++ |+++
T Consensus 180 ---l~~~l~~~~~~~r~DG~~Sv~raf~~~El~~l~~~-~~~-i~~~ 221 (233)
T PRK06202 180 ---AGTRLLSRSSFVHTDGLLSVRRSFTPAELAALAPQ-GWR-VERS 221 (233)
T ss_pred ---HHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHCCC-CCE-EECC
T ss_conf ---99888636964420518899986699999987146-877-7126
No 30
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.63 E-value=3.8e-16 Score=124.17 Aligned_cols=134 Identities=23% Similarity=0.286 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHCCCHHH-------H-------------HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 6342115766761480179-------9-------------9999852064467997798602335577777664138863
Q gi|254780624|r 37 VSHRYDVMNDLMSLGLHRF-------W-------------KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRS 96 (265)
Q Consensus 37 iA~~YD~~N~~~S~G~~r~-------W-------------r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~ 96 (265)
|+.+||+-|+|.++-+|.. | -+.+++.+.++++ .+|||||||-|.++..++++++ +
T Consensus 116 i~~HYDlgNdfy~l~LD~~M~YSca~f~~~~tLe~AQ~~Kl~~i~~kl~l~~G--~~VLeIGcGWGgla~~aA~~~g--~ 191 (383)
T PRK11705 116 GKEHYDLGNDLFSAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPG--MRVLDIGCGWGGLARYAAEHYG--V 191 (383)
T ss_pred CHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEEECCCHHHHHHHHHHHCC--C
T ss_conf 55322788189997169874422121699999999999999999986489999--9798857874999999999749--7
Q ss_pred EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEE
Q ss_conf 278721332222111100000112222222222233345755446740366420132--134432012100048521177
Q gi|254780624|r 97 QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 97 ~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~ 174 (265)
+|+|+-+|+++.+.|++|++ ++ +|++...|-.++ +++||.|++--.+.|| ...+..++.+.|+|||||+++
T Consensus 192 ~VtgiTlS~eQ~~~a~~r~~--gl--~v~v~l~DYRd~---~g~fD~IvSIeM~EhVG~~~~~~yF~~i~~lLkp~G~~~ 264 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVDRCLKPDGLFL 264 (383)
T ss_pred EEEEEECCHHHHHHHHHHHC--CC--CCEEEECCHHHC---CCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 59998588999999999973--89--878997152443---677355999714865287779999999998569997399
Q ss_pred EEECCCC
Q ss_conf 6305544
Q gi|254780624|r 175 VLEFSEV 181 (265)
Q Consensus 175 i~df~~p 181 (265)
+.-++.+
T Consensus 265 lqtI~~~ 271 (383)
T PRK11705 265 LHTIGSN 271 (383)
T ss_pred EEEECCC
T ss_conf 9993366
No 31
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.62 E-value=9.1e-16 Score=121.75 Aligned_cols=107 Identities=26% Similarity=0.392 Sum_probs=81.3
Q ss_pred HHHHHHHCCC-CCCCCEEEECCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9998520644-679977986023355777776641388--6327872133222211110000011222222222223334
Q gi|254780624|r 58 EAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRIAEASDN--RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 58 ~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l~~~~~~--~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
+.+.+.+... .++..+|||+|||+|..+..++...+. ...++|+|||...+..|.++ .+.+.|.++|.-++
T Consensus 72 ~~i~~~~~~~~~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~------~~~~~~~Va~~~~l 145 (272)
T PRK11088 72 DAVANLLAERLDEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKR------YPQVTFCVASSHRL 145 (272)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCC------CCCCEEEEEECCCC
T ss_conf 999999997567778648881587778999999974115787379981179999999626------88854999610018
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 5755446740366420132134432012100048521177630
Q gi|254780624|r 135 PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 135 p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
||.|+|+|+|++-|+-+ -.+|+.|||||||.++.+-
T Consensus 146 P~~d~s~D~vl~vFsP~-------~~~Ef~RvLkp~G~li~V~ 181 (272)
T PRK11088 146 PFADQSLDAIIRIYAPC-------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred CCCCCCCEEEEEEECCC-------CHHHHHHEECCCCEEEEEE
T ss_conf 88766540899984378-------8588612463797899997
No 32
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.60 E-value=7.7e-16 Score=122.24 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=90.0
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+-+++.+...++ .+|||+|||+|.++..++++. +.++|+++|+++.+++.|+++++..++ ++++++++|+.+ +++
T Consensus 21 ~lLl~~l~~~~~--g~vLDlGcG~G~i~~~la~~~-p~~~v~~vDi~~~Al~~a~~N~~~n~l-~~v~v~~~D~~~-~~~ 95 (170)
T pfam05175 21 RLLLSHLPKPLG--GKVLDLGCGYGVLGAALAKRS-PDLEVTMVDINARALESARANLAANGL-ENGEVFWSDLYS-AVE 95 (170)
T ss_pred HHHHHCCCCCCC--CCEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCC-CCC
T ss_conf 999970897789--949997764829899999978-986798515449999999999998099-848999744666-577
Q ss_pred CCCCCCCEEE--EEEC---CCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 5446740366--4201---3213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLA--FGIR---NMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~s--f~l~---~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+++||.|+|- |-.- ...=.++.++++.|+|||||.+.++
T Consensus 96 ~~~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V 139 (170)
T pfam05175 96 PGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIV 139 (170)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 88660899897721142032899999999999961649799999
No 33
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.55 E-value=5.1e-15 Score=116.95 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=130.0
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHH-HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE
Q ss_conf 2798999999999998763421157-667614801799-99998520644679977986023355777776641388632
Q gi|254780624|r 20 EVPEEEKQNMVNHVFSRVSHRYDVM-NDLMSLGLHRFW-KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265)
Q Consensus 20 ~v~~~~k~~~v~~~F~~iA~~YD~~-N~~~S~G~~r~W-r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265)
.++..-...||...||.-|.++|.+ .+ -+|....- -+.++..+...+ -.++||+|||||.....+-... .+
T Consensus 77 e~p~~pP~aYVe~LFD~~Ae~Fd~~LVd--kL~Y~vP~~l~emI~~~~~g~--F~~~lDLGCGTGL~G~~lR~~a---~~ 149 (287)
T COG4976 77 ETPEKPPSAYVETLFDQYAERFDHILVD--KLGYSVPELLAEMIGKADLGP--FRRMLDLGCGTGLTGEALRDMA---DR 149 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHCCCCC--CCEEEECCCCCCCCCHHHHHHH---HH
T ss_conf 8887880679999999999999999998--735761899999997515776--2023442667676627678888---65
Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 7872133222211110000011222222222223334-5-7554467403664201321344320121000485211776
Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-P-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-p-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
++|+|||++||++|.+| +... .+.++++..+ + ..++.||+|+.+-+|-.+-+++..+--+.+.|+|||.|.
T Consensus 150 ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfa- 222 (287)
T COG4976 150 LTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFA- 222 (287)
T ss_pred CCCCCHHHHHHHHHHHC----CCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEE-
T ss_conf 12776269999998862----4157--8889899987552267764301245678864003468999998558986489-
Q ss_pred EECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC--------
Q ss_conf 305544551011234565311133210254288768657899999689989999999975995379998556--------
Q gi|254780624|r 176 LEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN-------- 247 (265)
Q Consensus 176 ~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~-------- 247 (265)
||.-+-+-. |++..+...-|. .+..-+..++...||+.|++++.+-
T Consensus 223 --FSvE~l~~~---------------~~f~l~ps~RyA---------H~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv 276 (287)
T COG4976 223 --FSVETLPDD---------------GGFVLGPSQRYA---------HSESYVRALLAASGLEVIAIEDTTIRRDAGEPV 276 (287)
T ss_pred --EEECCCCCC---------------CCEECCHHHHHC---------CCHHHHHHHHHHCCCEEEEEECCCCHHHCCCCC
T ss_conf --872316777---------------873216465322---------522899999974596278742430033059987
Q ss_pred -CEEEEEEEEEEC
Q ss_conf -649999998116
Q gi|254780624|r 248 -GVVALHSGWKCE 259 (265)
Q Consensus 248 -Gi~~i~~g~Kp~ 259 (265)
|+ +++++||.
T Consensus 277 ~G~--L~iark~~ 287 (287)
T COG4976 277 PGI--LVIARKKA 287 (287)
T ss_pred CCC--EEEEECCC
T ss_conf 871--69974379
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=8.8e-15 Score=115.42 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=91.2
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345755
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265)
.+++.+... ++.++||+|||.|..+..|+++. .+|+++|+|+.+|+.+++.+.+.++ .+|++...|....++ +
T Consensus 21 ~~~~~~~~~--~~g~~LDlgcG~Grna~~La~~G---~~VtavD~s~~al~~~~~~a~~~~l-~~v~~~~~Dl~~~~~-~ 93 (198)
T PRK11207 21 EVLEAVKVV--KPGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPMSIANLERIKAAENL-DNLHTRVVDLNNLTF-D 93 (198)
T ss_pred HHHHHHCCC--CCCCEEEECCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCC-C
T ss_conf 999873358--99747772478878699998689---8599997999999999999987599-824656203123887-7
Q ss_pred CCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 4467403664201321--344320121000485211776305
Q gi|254780624|r 139 NSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
+.||.|+++..+++++ ..+..+.+|.+.++|||..+|+..
T Consensus 94 ~~yDlIlstvv~~fl~p~~~p~iia~mq~~t~PGG~~LIV~~ 135 (198)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 770589786452104866789999999996089948999997
No 35
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.54 E-value=5.4e-14 Score=110.35 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=93.4
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC
Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333-45
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP 135 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp 135 (265)
|-..+..|.+.++ .+++|||||||.++.++++..++.++|+++|..+++++.+++++++.+..+||++++|+|-+ ++
T Consensus 29 Ra~~l~~L~l~~~--~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~ 106 (198)
T PRK00377 29 RALALSKLRLFKG--GKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLP 106 (198)
T ss_pred HHHHHHHHCCCCC--CEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
T ss_conf 9999997099998--99999177032999999996697875999967888999999999980999885999525488772
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 75544674036642013213443201210004852117763
Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
--+..+|.|++.=+- .+.+..|+.+.+.|+|||++++.
T Consensus 107 ~l~p~pD~vFIGG~~---g~l~~il~~~~~~L~~gGriVin 144 (198)
T PRK00377 107 KLNPKSDRYFIGGGG---EELPEIIQAALEKIGKGGRIVAD 144 (198)
T ss_pred CCCCCCCEEEEECCC---CCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 089988989997887---77899999999857999899998
No 36
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=99.53 E-value=3e-13 Score=105.57 Aligned_cols=142 Identities=25% Similarity=0.391 Sum_probs=106.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
..+++.+...++ ...|-|+|||.+.++.. .++..+|...|+... +-....+|+.++|++
T Consensus 56 d~iI~~lk~~p~-~~vIaD~GCGdA~lA~~----~~~~~kV~SfDLva~----------------n~~Vt~cDi~~~PL~ 114 (214)
T pfam05148 56 DVIIRKLKRRPG-NGVIADLGCGEARIAFR----KREFENVHSFDLVAV----------------NKRVIPCDMARVPLE 114 (214)
T ss_pred HHHHHHHHHCCC-CEEEEECCCCHHHHHHH----CCCCCEEEEEECCCC----------------CCCCCCCCCCCCCCC
T ss_conf 999999984899-71899758865799986----467873885132568----------------988351353368788
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 54467403664201321344320121000485211776305544551011234565311133210254288768657899
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIE 217 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~ 217 (265)
|++.|+++.+.+|- =.|+...+.|++|||||||.+.|.|..
T Consensus 115 d~svDvaVfCLSLM-GTN~~~fi~EA~RvLk~~G~L~IAEV~-------------------------------------- 155 (214)
T pfam05148 115 DESVDVAVFCLSLM-GTNIADFLKEANRILKNGGLLKIAEVR-------------------------------------- 155 (214)
T ss_pred CCCEEEEEEEHHHH-CCCHHHHHHHHHHHCCCCCEEEEEEEE--------------------------------------
T ss_conf 77263687758762-887799999987603108789999974--------------------------------------
Q ss_pred HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCC
Q ss_conf 999689989999999975995379998556649999998116454
Q gi|254780624|r 218 SIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCENIG 262 (265)
Q Consensus 218 Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~~ 262 (265)
.+|.+.+++.+.+++.||. ...++.+..+.+++.-.|...++
T Consensus 156 --SRf~~~~~Fv~~~~~~GF~-~~~~d~~n~~F~~f~F~K~~~~~ 197 (214)
T pfam05148 156 --SRFPSVGLFERAFTKLGFE-VEHVDLSNAQFVLFEFQKTSRVG 197 (214)
T ss_pred --CCCCCHHHHHHHHHHCCCE-EEEEECCCCEEEEEEEEECCCCC
T ss_conf --0168989999999975976-77530688889999999866567
No 37
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=99.51 E-value=7.6e-14 Score=109.39 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=110.7
Q ss_pred CHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCHHCCCCCCCC
Q ss_conf 017999-----9998520644679977986023355777776641388632787213322221111--000001122222
Q gi|254780624|r 52 LHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR--DRAFKENLQDCI 124 (265)
Q Consensus 52 ~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~--~r~~~~~~~~~i 124 (265)
+|..|| +++...+.+..+ .+|||||||.|.....++.... ..|+|+|+|.-.+-+-. ++.. +...++
T Consensus 94 IDtEWrSd~KW~Rl~~~i~~L~g--k~VlDVGcgNGYy~~RMlg~ga--~~viGiDPs~lf~~QF~ai~~~~--~~~~~~ 167 (315)
T pfam08003 94 IDTEWRSDWKWDRVLPHLSPLKG--RTILDVGCGNGYHMWRMLGEGA--ALVVGIDPSELFLCQFEAVRKLL--GNDQRA 167 (315)
T ss_pred CCCCCCCCCCHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHC--CCCCCE
T ss_conf 44210042229988734224268--9887517786499998622399--87998898199999999999970--898756
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHH
Q ss_conf 22222233345755446740366420132134432012100048521177630554455101123456531113321025
Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265)
Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265)
.++.--.|++|.. +.||.|+|--.|-|-.+|...|++++..|+|||.+++--+-.+.... ..++|. ++
T Consensus 168 ~~lPlg~E~lp~~-~~FDtVFsMGVLYHrrsP~~hL~~Lk~~L~~gGeLvLETlvi~gd~~---------~~L~P~-~r- 235 (315)
T pfam08003 168 HLLPLGIEQLPAL-EAFDTVFSMGVLYHRRSPLDHLLQLKDQLVKGGELVLETLVIEGDEN---------TVLVPG-DR- 235 (315)
T ss_pred EEECCCHHHCCCC-CCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCC---------EEECCC-CC-
T ss_conf 8853676548663-42155776544432689899999999852879789999877659887---------256788-54-
Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 4288768657899999689989999999975995379998556
Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN 247 (265)
Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~ 247 (265)
.++.+..| --|+...+..+|+++||++|+..+.+.
T Consensus 236 YA~M~NV~--------fiPS~~~L~~Wl~r~GF~~i~~vd~~~ 270 (315)
T pfam08003 236 YAQMRNVY--------FIPSAAALKNWLEKCGFVDVRIVDVSV 270 (315)
T ss_pred CCCCCCCE--------ECCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 14798754--------547889999999985993278887787
No 38
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.51 E-value=1.5e-13 Score=107.50 Aligned_cols=141 Identities=17% Similarity=0.294 Sum_probs=101.5
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345755446740366--
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA-- 147 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s-- 147 (265)
.+.+|||+|||+|-++..+++.. +.++++|+|+|+..|+.|++++.+.+. .+|+|+++|..+ ++++..||+|++-
T Consensus 109 ~~~~ilDlgtGSGcI~isLa~~~-p~~~v~a~DiS~~Al~~A~~Na~~~~l-~~v~~~~~d~~~-~~~~~~fDlIVSNPP 185 (277)
T PRK09328 109 QPCRILDLGTGTGAIALALASER-PDCEVTAVDRMPDAVALAQRNAQHLAI-KNVRILQSDWFS-ALSGQQFAMIVSNPP 185 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCHH-HCCCCCCCEEEECCC
T ss_conf 78818995455699999999867-798999964899999999999998098-869999447521-137877788997899
Q ss_pred EE-----------ECC------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHH
Q ss_conf 42-----------013------------2134432012100048521177630554455101123456531113321025
Q gi|254780624|r 148 FG-----------IRN------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265)
Q Consensus 148 f~-----------l~~------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265)
|. +++ +....+.++++.++|+|||.+++ |++.
T Consensus 186 YI~~~~~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~-Eig~------------------------ 240 (277)
T PRK09328 186 YIDAQDPHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLL-EHGW------------------------ 240 (277)
T ss_pred CCCCCHHHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECH------------------------
T ss_conf 877000343824216683899817975899999999999984466989999-9681------------------------
Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 4288768657899999689989999999975995379998556649999998
Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGW 256 (265)
Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~ 256 (265)
...+.+.++++++||.+|++..=..|.-.+++|+
T Consensus 241 ------------------~Q~~~v~~l~~~~gf~~i~~~kDl~g~~R~v~ar 274 (277)
T PRK09328 241 ------------------QQGEAVRQLFIRAGYSDVETCRDYGDNERVTLGR 274 (277)
T ss_pred ------------------HHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEE
T ss_conf ------------------5899999999967997047861789992399999
No 39
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=7.6e-14 Score=109.38 Aligned_cols=137 Identities=22% Similarity=0.324 Sum_probs=98.6
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345755446740366--
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA-- 147 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s-- 147 (265)
+..+|||+|||+|-+++.+++.. +.++|+++|+|+..|+.|++++...++..+|+++++|..+ ++++..||+|+|.
T Consensus 121 ~~~~iLDlGtGSG~Iai~la~~~-p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~-~~~~~~fDlIVSNPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEECCCCHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH-HCCCCCCCEEEECCC
T ss_conf 77715552168079999999878-9987999989999999999999860854336888351433-145777787997799
Q ss_pred EE-----------ECC------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHH
Q ss_conf 42-----------013------------2134432012100048521177630554455101123456531113321025
Q gi|254780624|r 148 FG-----------IRN------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265)
Q Consensus 148 f~-----------l~~------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265)
|. ++| +....+.++++.+.|||||.+++ |++.
T Consensus 199 YI~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~l-EiG~------------------------ 253 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVGN------------------------ 253 (284)
T ss_pred CCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECC------------------------
T ss_conf 788465544976411586998758955879999999988984256978999-9797------------------------
Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEE
Q ss_conf 428876865789999968998999999997599537999855664999
Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVAL 252 (265)
Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i 252 (265)
+++.+...+.+.||+=.+..+=.-|++.|
T Consensus 254 -------------------~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (284)
T TIGR03533 254 -------------------SMEALEEAYPDVPFTWLEFENGGDGVFLL 282 (284)
T ss_pred -------------------CHHHHHHHCCCCCCEEEEECCCCCEEEEE
T ss_conf -------------------88999986689996477415898369998
No 40
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=99.48 E-value=2.2e-14 Score=112.84 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=130.2
Q ss_pred HHHHHHHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 99999876----342115766761480179999998520644679977986023355777776641388-6327872133
Q gi|254780624|r 30 VNHVFSRV----SHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDN-RSQIVVADIN 104 (265)
Q Consensus 30 v~~~F~~i----A~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s 104 (265)
|.++|+.+ -|.|.. ++++|-.-. -..+.+.+-++.-++..|-|+||-+|..++.+.+.... ..+++|||-|
T Consensus 21 VA~VF~DM~~RSvP~Y~~---~~~~GayfI-~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS 96 (247)
T TIGR00740 21 VAEVFPDMIQRSVPGYSN---IINLGAYFI-GMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNS 96 (247)
T ss_pred HHHHCHHHHHCCCCHHHH---HHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 322132566226832789---999889999-8777765433116887412233432357766530468785379884188
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEE-CCCC
Q ss_conf 22221111000001122222222222333457554467403664201321--34432012100048521177630-5544
Q gi|254780624|r 105 NEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLE-FSEV 181 (265)
Q Consensus 105 ~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~d-f~~p 181 (265)
..|++.||+++......-.|++.++|..++.+++.|. |+..|.|..++ +++..|+.+|.-|.|||.+++-| |..-
T Consensus 97 ~pM~~~~~~~~~~y~~~~Pv~~~~~D~~~v~~~~AS~--~~L~F~LQFl~P~~R~~LL~KIY~~L~~nGvL~lsEK~~~E 174 (247)
T TIGR00740 97 MPMLERCREHIKAYKNAIPVEVLCMDIREVEIKNASM--VVLNFTLQFLRPEEREALLKKIYNGLNPNGVLVLSEKFMFE 174 (247)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 8899999999987424788232010245666655468--87887760478234799999987410778668863201366
Q ss_pred CCCHHHHHHHHHHHC--HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
Q ss_conf 551011234565311--133210254288768657899999689989999999975995379
Q gi|254780624|r 182 QGPVFKKIYDMWSFK--VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265)
Q Consensus 182 ~~~~~~~~~~~y~~~--iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265)
+..+-..+.+.|-.+ --..-..-++.++++ -|.+....+-++-...|+++||++++
T Consensus 175 D~~~~~~li~l~~~fK~~~GYS~~Ei~~KR~~----LENV~~~~S~~~~~a~L~~vGF~~vE 232 (247)
T TIGR00740 175 DRKLDKLLIELHHLFKRANGYSELEISQKREA----LENVLVTDSLETHKARLENVGFKHVE 232 (247)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHCCHHHHH
T ss_conf 78999999999999874158723468887888----76202300146645667535646888
No 41
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.47 E-value=2.1e-14 Score=112.99 Aligned_cols=157 Identities=18% Similarity=0.310 Sum_probs=110.1
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC------EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 99852064467997798602335577777664138863------278721332222111100000112222222222233
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRS------QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~------~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265)
.+.+.+ ++++||||+|||-|.+...|.+.-.-.+ ++.||+++.+-+..|-.| -|+.+++|++
T Consensus 6 ~I~~~I----p~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~R--------Gv~VIq~Dld 73 (205)
T TIGR02081 6 LILDLI----PPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVAR--------GVSVIQGDLD 73 (205)
T ss_pred HHHHHC----CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHC--------CCCEECCCCC
T ss_conf 898616----8887364101688789999997437898887120001023454459999862--------5201300600
Q ss_pred C-C-CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHH
Q ss_conf 3-4-5755446740366420132134432012100048521177630554455101123456531113321025428876
Q gi|254780624|r 133 T-L-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEE 210 (265)
Q Consensus 133 ~-l-p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~ 210 (265)
+ | -|+|+|||.|+.|-+|..+.++++.|+||.||=| +.+ .|-|..--++.=+++..+-=||. ..+.-
T Consensus 74 ~GL~~F~D~~FD~ViLsQTLQa~~Np~~iL~EmLRvg~---~aI---VSFPNFGyW~~R~~i~~~GRMPk-----Vt~~l 142 (205)
T TIGR02081 74 EGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGR---RAI---VSFPNFGYWRVRWSILTGGRMPK-----VTDEL 142 (205)
T ss_pred CCCCCCCCCCCCEEEECHHHHHHHCHHHHHHHHHHHCC---EEE---EECCCCCCHHCHHHEECCCCCCC-----CCCCC
T ss_conf 34011678876625421356642256899988776738---515---60588771101031110785887-----88787
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 8657899999689989999999975995
Q gi|254780624|r 211 PYQYLIESIRRFPNQQDFAAVISAAGFS 238 (265)
Q Consensus 211 ~Y~yL~~Si~~f~~~~el~~~l~~aGF~ 238 (265)
+|.|.---=..|+|-.++.+++.+.|++
T Consensus 143 PY~WynTPNiHfcT~~DF~~L~~~~~~~ 170 (205)
T TIGR02081 143 PYEWYNTPNIHFCTLADFEELCEELNLR 170 (205)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 8888888875323377899999871965
No 42
>KOG3010 consensus
Probab=99.47 E-value=3.8e-14 Score=111.30 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=75.0
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEE
Q ss_conf 79860233557777766413886327872133222211110000011222222222223334575--5446740366420
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE--ANSFDACTLAFGI 150 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~--d~sfD~V~~sf~l 150 (265)
.++|+|||+|..++.+++++. +|+|+|+|+.||++|+++-...-. +....-.+.+-.++. ++|.|.|+++-++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010 36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHH---HHEEECCCHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCEEEEHHHHHH
T ss_conf 588845688711478887543---431306879999986118986204--578534566565323787641211054567
Q ss_pred CCCHHHHHHHCCCCHHCCCCC-EEEEEE
Q ss_conf 132134432012100048521-177630
Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGG-RLLVLE 177 (265)
Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG-~~~i~d 177 (265)
| +-|.+++.++++|||||.| .+++.-
T Consensus 111 H-WFdle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010 111 H-WFDLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred H-HHCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 7-63429999999998077897799997
No 43
>KOG2361 consensus
Probab=99.45 E-value=1.4e-13 Score=107.63 Aligned_cols=188 Identities=22% Similarity=0.374 Sum_probs=121.1
Q ss_pred HHHHHHHH-HHH-----HHHHHCCCHHHHHHHHHHHHCCCCCCC-CEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCC
Q ss_conf 98763421-157-----667614801799999985206446799-77986023355777776641388-63278721332
Q gi|254780624|r 34 FSRVSHRY-DVM-----NDLMSLGLHRFWKEAMVTNLNPRKSKD-YRVLDVAGGTGDVAFRIAEASDN-RSQIVVADINN 105 (265)
Q Consensus 34 F~~iA~~Y-D~~-----N~~~S~G~~r~Wr~~~i~~l~~~~~~~-~~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s~ 105 (265)
|.+-|..| |.. |+| -.+|.|-.+-...+.+...+. .+||++|||-|.....+.+-.++ ...|+++|.|+
T Consensus 31 y~~~~~k~wD~fy~~~~~rF---fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp 107 (264)
T KOG2361 31 YEREASKYWDTFYKIHENRF---FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP 107 (264)
T ss_pred HHCCHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCH
T ss_conf 63364666456665324545---311677877567750755557345112224777512244424899873899748986
Q ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf 222111100000112222222222233----3457554467403664201321--3443201210004852117763055
Q gi|254780624|r 106 EMLSVGRDRAFKENLQDCITFIEANAE----TLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 106 ~Ml~~a~~r~~~~~~~~~i~~~~~da~----~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
..++.-++..... ..++.--+.|.. .-|.+.+++|.+++-|.|-.++ ..++++++++++|||||.+++-|++
T Consensus 108 ~Ai~~vk~~~~~~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361 108 RAIELVKKSSGYD--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred HHHHHHHHCCCCC--HHHHCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8999987363326--45501200016560103788867633478999875148477899999999974888679984145
Q ss_pred CCCCCHHHHHHHHHHHCHHHHHH-HHHCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
Q ss_conf 44551011234565311133210-25428876-8657899999689989999999975995379
Q gi|254780624|r 180 EVQGPVFKKIYDMWSFKVIPQLG-RFIAGDEE-PYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265)
Q Consensus 180 ~p~~~~~~~~~~~y~~~iiP~~g-~~~~~~~~-~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265)
.-+-..++.-- ...+ -+ -.+.+|.- +| |-+.+++..++.+|||..++
T Consensus 186 ~~DlaqlRF~~----~~~i--~~nfYVRgDGT~~Y---------fF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361 186 RYDLAQLRFKK----GQCI--SENFYVRGDGTRAY---------FFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred CCHHHHHHCCC----CCEE--ECCEEECCCCCEEE---------ECCHHHHHHHHHHCCCCHHC
T ss_conf 43478875157----7432--01458816996652---------23688999998751532100
No 44
>PRK06922 hypothetical protein; Provisional
Probab=99.45 E-value=3.2e-13 Score=105.35 Aligned_cols=105 Identities=27% Similarity=0.378 Sum_probs=84.4
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEE
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345--755446740366
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--FEANSFDACTLA 147 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~~d~sfD~V~~s 147 (265)
.+.+|+|+|.|.|.+.-.+.+.. |.++++|+|+|.+.++.-++|-...+. +=+..+|||.+|+ |+.+|.|.|.+|
T Consensus 420 ~G~~ivdiG~GGGVMldli~E~~-p~~~i~GIDiS~NVIe~L~kkK~~e~k--sW~V~~gDAL~l~d~f~~eSvdTiv~s 496 (679)
T PRK06922 420 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYS 496 (679)
T ss_pred CCCEEEEECCCCCHHHHHHHHHC-CCCCCEEEECCHHHHHHHHHHHHHCCC--CCEEECCCCCCCHHHCCCCCCCEEEEH
T ss_conf 47679986699621487667658-998614666608899999887775489--842321430361543475666468742
Q ss_pred EEEC-------------CCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 4201-------------32134432012100048521177630
Q gi|254780624|r 148 FGIR-------------NMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 148 f~l~-------------~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
--+| |..-.+++|+.+++||||||+++|-|
T Consensus 497 SIlHElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIRD 539 (679)
T PRK06922 497 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 539 (679)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7788888634566713479999999999998728886499945
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.44 E-value=1.4e-12 Score=101.20 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
-..+..|.+.++ ..++|+|||||.++.++++..+ .++|+++|.+++.++..++++.+.+. .||+.+.|+|-. .++
T Consensus 20 ai~LskL~l~~~--~vvwDIGaGsGsvsiEaa~~~p-~~~V~AvE~~~~~~~~i~~N~~~fg~-~nv~~i~g~Ap~-~l~ 94 (186)
T PRK08287 20 ALSLSKLELHRA--KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPAALRLIKENRQRFGC-GNIDIIPGEAPI-TLT 94 (186)
T ss_pred HHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCH-HCC
T ss_conf 999997199999--9999957887789999999789-98899993798999999998997299-987999377811-035
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 544674036642013213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+ .+|.|++.=+= .+.+..++.+...|+|||++++.
T Consensus 95 ~-~pD~vFIGGsg---g~l~~il~~~~~~L~~gGriVin 129 (186)
T PRK08287 95 G-KADAIFMGGSG---GHLTAIIDWALGHLHPGGRLVLN 129 (186)
T ss_pred C-CCCEEEEECCC---CCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7-89849997478---98899999999757999899998
No 46
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.43 E-value=4.9e-13 Score=104.15 Aligned_cols=135 Identities=26% Similarity=0.416 Sum_probs=96.0
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-
Q ss_conf 7997798602335577777664138863278721332222111100000112222222222233345755446740366-
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA- 147 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s- 147 (265)
.++.+|||+|||+|-++..+++.. +.++++|+|+|+..++.|++++...+. .+++++++|..+ ++++..||+|++-
T Consensus 86 ~~~~~ilDlgtGSG~I~i~la~~~-~~~~v~~~Dis~~Al~~A~~N~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsNP 162 (251)
T TIGR03534 86 KGPLKVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAKRLGL-ENVRFLKSDWFE-PLPGGKFDLIVSNP 162 (251)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCHHH-CCCCCCCCEEEECC
T ss_conf 489869995567169999999967-997899998987999999999998099-826865131432-15689866899789
Q ss_pred -EE-------E----CCC-------------HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf -42-------0----132-------------1344320121000485211776305544551011234565311133210
Q gi|254780624|r 148 -FG-------I----RNM-------------PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265)
Q Consensus 148 -f~-------l----~~~-------------~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265)
|. + +++ ....+.++++.++|+|||.+++ |.+.
T Consensus 163 PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~-Eig~---------------------- 219 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLL-EIGY---------------------- 219 (251)
T ss_pred CCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECH----------------------
T ss_conf 98874566632860102672999717984699999999999985367988999-9683----------------------
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE
Q ss_conf 25428876865789999968998999999997599537999855664
Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV 249 (265)
Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi 249 (265)
-..+++.+++++.||.++++..=..|.
T Consensus 220 --------------------~q~~~v~~l~~~~gf~~i~~~kDl~g~ 246 (251)
T TIGR03534 220 --------------------DQGEAVRALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred --------------------HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf --------------------789999999996899706885078989
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.43 E-value=7.7e-14 Score=109.35 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=91.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+.++..+.+... .+|.|+|||+|..+..|+++. +.+.|+|+|-|++||+.|+++. .+++|..+|+.+.. +
T Consensus 20 ~dLla~Vp~~~~--~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p 89 (257)
T COG4106 20 RDLLARVPLERP--RRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-P 89 (257)
T ss_pred HHHHHHCCCCCC--CEEEECCCCCCHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHC------CCCCEECCCHHHCC-C
T ss_conf 899864786664--103455778877889999868-8886760469999999999748------99732105275449-9
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 544674036642013213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+..+|++.+.=+|+.+||-...|......|.|||.+.+.
T Consensus 90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 90 EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 876330334436644364089999999850888569997
No 48
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=99.42 E-value=2.7e-13 Score=105.85 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=89.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
-++++.+.+++++ +|||||||||..+..+++..++.+.|+++|+.+++++.|++++.+.+. .||.++++|...-.-+
T Consensus 63 a~ml~~L~l~~g~--~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~-~nV~~~~gdg~~g~~~ 139 (205)
T pfam01135 63 AMMLELLELKPGM--RVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGL-ENVIVVVGDGRQGWPE 139 (205)
T ss_pred HHHHHHCCCCCCC--EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCC
T ss_conf 9999970789999--899966996599999999838787699983589999999999998488-8658984564558833
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 544674036642013213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
...||.|.++-+...+| .. +..-|++||++++-
T Consensus 140 ~apfD~Iiv~aa~~~iP---~~---l~~qL~~gGrLv~p 172 (205)
T pfam01135 140 FAPYDAIHVGAAAPEIP---EA---LIDQLKEGGRLVIP 172 (205)
T ss_pred CCCCCEEEEEEECCCCC---HH---HHHHCCCCCEEEEE
T ss_conf 39805899975067688---99---99962879789999
No 49
>KOG1541 consensus
Probab=99.42 E-value=1.6e-13 Score=107.26 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 87634211576676148017999999852064467997798602335577777664138863278721332222111100
Q gi|254780624|r 35 SRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR 114 (265)
Q Consensus 35 ~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r 114 (265)
|.-|++|+.-.+++. =+++. -.++++.+....+.+.-|||||||||..+..+... .-..+|+|||+.||++|.++
T Consensus 17 d~eA~kYt~nsri~~-IQ~em-~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541 17 DTEAPKYTQNSRIVL-IQAEM-AERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER 91 (270)
T ss_pred HHHHHHCCCCCEEEE-EHHHH-HHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECCC---CCEEEEECCCHHHHHHHHHH
T ss_conf 023210266634432-21778-88789876089988717998345777432002168---95588622898999999976
Q ss_pred HHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEECC---------CH--HHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 00011222222222223-334575544674036642013---------21--3443201210004852117763
Q gi|254780624|r 115 AFKENLQDCITFIEANA-ETLPFEANSFDACTLAFGIRN---------MP--HITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 115 ~~~~~~~~~i~~~~~da-~~lp~~d~sfD~V~~sf~l~~---------~~--d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
-.+ -+++.+|+ +-+||+..+||.|.+--++.+ .| .+..++..+|.+|++|++.++.
T Consensus 92 e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541 92 ELE------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred HHH------CCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 640------47663124788788997412478862032101468444673899999866453210368615888
No 50
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.41 E-value=2.2e-13 Score=106.45 Aligned_cols=119 Identities=21% Similarity=0.363 Sum_probs=88.3
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCE
Q ss_conf 46799779860233557777766413886327872133222211110000011222222222223-33457554467403
Q gi|254780624|r 67 RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA-ETLPFEANSFDACT 145 (265)
Q Consensus 67 ~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da-~~lp~~d~sfD~V~ 145 (265)
...+..+|||+|||+|-++..++... +.++++|+|+|++.|++|++.+.+.++..+|+|+++|. +.+ ....||+|+
T Consensus 132 ~~~~~~~ILDLGTGSGcIaISLa~e~-p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l--~~~kFDlIV 208 (503)
T PRK01544 132 RNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--GKQKFDFIV 208 (503)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCC--CCCCCCEEE
T ss_conf 34557727884666799999999867-899899998989999999999998088201799965531015--888724798
Q ss_pred EE--EE-------E----CC-------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf 66--42-------0----13-------------2134432012100048521177630554455101123
Q gi|254780624|r 146 LA--FG-------I----RN-------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKI 189 (265)
Q Consensus 146 ~s--f~-------l----~~-------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~ 189 (265)
|- |- | ++ +....+.++++.+.|||||++++ |.+.-+...+..+
T Consensus 209 SNPPYI~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l~l-EIGy~Q~e~V~~I 277 (503)
T PRK01544 209 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQAEAVTQI 277 (503)
T ss_pred ECCCCCCHHHHHHCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHH
T ss_conf 38998875666652766531693788648876289999999988985288988999-9787868999999
No 51
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.41 E-value=1.4e-12 Score=101.13 Aligned_cols=108 Identities=27% Similarity=0.410 Sum_probs=88.7
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 998520644679977986023355777776641388632787213322221111000001122222222222333-4575
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFE 137 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~ 137 (265)
-.+..|.+.++ .+++|+|||||.++.+++ +..+.++|+++|-.+++++..++++++.+ .+|+..+.|+|-+ |+=.
T Consensus 25 l~ls~L~~~~g--~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 25 LTLSKLRPRPG--DRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHHHCCCCC--CEEEEECCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHCCC
T ss_conf 88986088999--989995788668999999-73988559999258889999999999849-996799954645763699
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 54467403664201321344320121000485211776
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
+ ++|+|++.=+ . +.+..|+.+...|||||++++
T Consensus 101 ~-~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 101 P-SPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred C-CCCEEEECCC-C---CHHHHHHHHHHHCCCCCEEEE
T ss_conf 9-9999998798-7---778999999997186876999
No 52
>KOG3045 consensus
Probab=99.40 E-value=2.3e-12 Score=99.87 Aligned_cols=138 Identities=20% Similarity=0.358 Sum_probs=104.3
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+.+++.+..++. +..|-|+|||-+.++. ... -+|...|+... |-+.+.+|+.++|++
T Consensus 169 d~ii~~ik~r~~-~~vIaD~GCGEakiA~----~~~--~kV~SfDL~a~----------------~~~V~~cDm~~vPl~ 225 (325)
T KOG3045 169 DVIIRKIKRRPK-NIVIADFGCGEAKIAS----SER--HKVHSFDLVAV----------------NERVIACDMRNVPLE 225 (325)
T ss_pred HHHHHHHHHCCC-CEEEEECCCCHHHHHH----CCC--CCEEEEEEECC----------------CCCEEECCCCCCCCC
T ss_conf 999999971767-6478853664233320----466--65046630027----------------885353224478676
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 54467403664201321344320121000485211776305544551011234565311133210254288768657899
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIE 217 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~ 217 (265)
|+|.|+++++.+| ..+|+...++|++|||||||.+.|.|..
T Consensus 226 d~svDvaV~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~-------------------------------------- 266 (325)
T KOG3045 226 DESVDVAVFCLSL-MGTNLADFIKEANRILKPGGLLYIAEVK-------------------------------------- 266 (325)
T ss_pred CCCCCEEEEEHHH-HCCCHHHHHHHHHHHHCCCCEEEEEEHH--------------------------------------
T ss_conf 6754478752755-3433899999998873358669998602--------------------------------------
Q ss_pred HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECC
Q ss_conf 9996899899999999759953799985566499999981164
Q gi|254780624|r 218 SIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCEN 260 (265)
Q Consensus 218 Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~ 260 (265)
.+|.+...+...+...|| .+.+++.+..+.+++.-.|+..
T Consensus 267 --SRf~dv~~f~r~l~~lGF-~~~~~d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045 267 --SRFSDVKGFVRALTKLGF-DVKHKDVSNKYFTLFEFKKTPK 306 (325)
T ss_pred --HHCCCHHHHHHHHHHCCC-EEEEHHHHCCEEEEEEEECCCC
T ss_conf --213408899999987287-0221100004189899733783
No 53
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.40 E-value=4.3e-13 Score=104.54 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=90.3
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
-++++.+.+++++ +|||||||||..+..+++..++.++|+++|+.+.+++.|++++.+.+. .||.++++|...-.-+
T Consensus 66 a~ml~~L~l~~~~--~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~G~~~ 142 (214)
T PRK13942 66 AIMCELLDLDEGQ--KVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGY-ENVEVILGDGTKGYEE 142 (214)
T ss_pred HHHHHHHCCCCCC--EEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCC
T ss_conf 9999972799999--799967995299999999747678579997179999999999986376-8758985675667844
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 544674036642013213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
...||.|.++-+...+| .. +..-|++||++++-
T Consensus 143 ~apfD~Iiv~aa~~~iP---~~---l~~qL~~gGrLV~P 175 (214)
T PRK13942 143 NAPYDRIYVTAAGPDIP---KP---LLEQLKDGGIMVIP 175 (214)
T ss_pred CCCCCEEEEEECCCCCC---HH---HHHHCCCCCEEEEE
T ss_conf 59812799985176578---99---99962889589999
No 54
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=3.1e-13 Score=105.41 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=86.3
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345755446740366--
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA-- 147 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s-- 147 (265)
+..+|||+|||+|-++..++...+ .++|+++|+|+..|+.|++++...++..+|+++++|..+ +++++.||+|+|.
T Consensus 133 ~~~rilDlGtGSG~Iaisla~~~p-~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~-~l~~~~fDlIvSNPP 210 (307)
T PRK11805 133 QPTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRRYDLIVSNPP 210 (307)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH-CCCCCCCCEEEECCC
T ss_conf 887277742782799999998789-988999858999999999999983887738998040221-268875077996799
Q ss_pred EE-----------ECC------------CHHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 42-----------013------------2134432012100048521177630554
Q gi|254780624|r 148 FG-----------IRN------------MPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 148 f~-----------l~~------------~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
|. ++| +.-..+.++++.++|||||.+++ |++.
T Consensus 211 YI~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~-EiG~ 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVC-EVGN 265 (307)
T ss_pred CCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECC
T ss_conf 788565633977531587888768924889999999988974476968999-9797
No 55
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=99.38 E-value=3.9e-13 Score=104.77 Aligned_cols=165 Identities=19% Similarity=0.297 Sum_probs=102.6
Q ss_pred CCCCEEEECCHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC---------CCCCCCCCCCCC-----
Q ss_conf 79977986023355-777776641388632787213322221111000001122---------222222222333-----
Q gi|254780624|r 69 SKDYRVLDVAGGTG-DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ---------DCITFIEANAET----- 133 (265)
Q Consensus 69 ~~~~~iLDiGcGTG-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~---------~~i~~~~~da~~----- 133 (265)
+++.+|||+|||-| ++..+... .-..++|+|||+.-|+.|++|....... -...|+.+|...
T Consensus 62 ~~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~ 138 (327)
T pfam03291 62 KPKRKVLDLDCGKGGDLEKYFKG---GISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVRE 138 (327)
T ss_pred CCCCEEEEECCCCCCCHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 88987998368664457889747---986899966899999999999998642114444566750012315621567877
Q ss_pred -CCCCCCCCCCCEEEEEECCC-HH---HHHHHCCCCHHCCCCCEEEEEECCCCCCCHH-HHHHHH------HHHC-----
Q ss_conf -45755446740366420132-13---4432012100048521177630554455101-123456------5311-----
Q gi|254780624|r 134 -LPFEANSFDACTLAFGIRNM-PH---ITLVLQEIYRILKCGGRLLVLEFSEVQGPVF-KKIYDM------WSFK----- 196 (265)
Q Consensus 134 -lp~~d~sfD~V~~sf~l~~~-~d---~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~-~~~~~~------y~~~----- 196 (265)
++.+...||+|+|.|++|.. .+ ....|+++...|||||.|+. +.|+...+ ..+-.. +...
T Consensus 139 ~~~~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~~Lk~GG~FIG---T~~d~~~i~~~l~~~~~~~~~~gN~~y~i~ 215 (327)
T pfam03291 139 VFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKFIG---TTPDGDFIIKKLTATFVEHKSFGNSIYYVS 215 (327)
T ss_pred HCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEE---EECCHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 53577885037751787898764899999999999986058988999---966789999999860345320586038999
Q ss_pred -----HHHHHHHHHCCCHHHHH-HHHHHHHHCC----CHHHHHHHHHHCCCCEEEEEECC
Q ss_conf -----13321025428876865-7899999689----98999999997599537999855
Q gi|254780624|r 197 -----VIPQLGRFIAGDEEPYQ-YLIESIRRFP----NQQDFAAVISAAGFSNVSFTNYT 246 (265)
Q Consensus 197 -----iiP~~g~~~~~~~~~Y~-yL~~Si~~f~----~~~el~~~l~~aGF~~v~~~~~~ 246 (265)
..|..|. .|. ||.+.++..| .-+.|.+++++.||+-|..++|.
T Consensus 216 f~~~~~~~~fG~-------~y~f~l~~~v~~~~EYlV~~~~~~~l~~eygleLv~~~~F~ 268 (327)
T pfam03291 216 FEKDPPRPPFGI-------KYVYNLEDMVTDVPEYLVPFETLVELAEEYGLELVDKKTFH 268 (327)
T ss_pred ECCCCCCCCCCC-------EEEEEECCCCCCCCEEECCHHHHHHHHHHCCCEEEEECCHH
T ss_conf 468899999986-------79999721178887313679999999998598999946879
No 56
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.4e-12 Score=101.33 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=94.9
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222222333457554
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN 139 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~ 139 (265)
.+..+... ++.+|||.|.|+|.++..|++..++.++|+..|+-+++.+.|++++...++.++|++..+|+.+.-+++
T Consensus 86 I~~~~gi~--pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 86 IVARLGIS--PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHCCCC--CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-
T ss_conf 99870999--887899815680599999999648884599999527899999999998424561378705400024655-
Q ss_pred CCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 467403664201321344320121000485211776
Q gi|254780624|r 140 SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 140 sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
.||+|+. .+|||-.++..+..+|||||.+++
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred CCCEEEE-----CCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 4677997-----589848999999987179967999
No 57
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=1e-12 Score=102.16 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=88.6
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
-++++.+.++++ .+|||||||||..+..+++..++.++|+++|+.+++.+.|++++.+.+..++|++.++|+..-.-+
T Consensus 62 a~ml~~L~~~~~--~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~ 139 (205)
T PRK13944 62 AMMCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 999997068999--989997898519999999983747717999536999999999999859863306797655657743
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 54467403664201321344320121000485211776
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
...||.|.++-+...+| .. +..-|+|||++++
T Consensus 140 ~apfD~Iiv~aa~~~iP---~~---l~~QL~~gGrLV~ 171 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP---SA---LVRQLKDGGVLVI 171 (205)
T ss_pred CCCCCEEEEEEECCCCC---HH---HHHHCCCCCEEEE
T ss_conf 49804899985077689---99---9985487979999
No 58
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.33 E-value=1.3e-12 Score=101.34 Aligned_cols=123 Identities=23% Similarity=0.362 Sum_probs=92.5
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 61480179999998520644679977986023355777776641388632787213322221111000001122222222
Q gi|254780624|r 48 MSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI 127 (265)
Q Consensus 48 ~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~ 127 (265)
+++|.|-. -+.+...+.. ..+|||+|||+|.+++.++++..+ ++|+||++.+.|.+.|++.++-.++..+|+++
T Consensus 27 ~~~~~Dai---LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 27 FRYGTDAI---LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred CCCCCHHH---HHHHHCCCCC--CCEEEEECCCCCHHHHHHHCCCCC-CCEEEEEECHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 16640899---9976526566--876988368946899997455877-80799981799999999988618613401676
Q ss_pred CCCCCCCC--CCCCCCCCCEEE---EEE-------------CCC--HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 22233345--755446740366---420-------------132--13443201210004852117763
Q gi|254780624|r 128 EANAETLP--FEANSFDACTLA---FGI-------------RNM--PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 128 ~~da~~lp--~~d~sfD~V~~s---f~l-------------~~~--~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
++|..++. ..-.+||+|+|- |.. ||- -+.+..++-+.++|||||++.++
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 430887654236565478995989878753348674665566322288999999999974679789999
No 59
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=99.32 E-value=4.8e-13 Score=104.22 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHH----CCCHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 342115766761----48017999-----999852064467997798602335577777664138863278721332222
Q gi|254780624|r 38 SHRYDVMNDLMS----LGLHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML 108 (265)
Q Consensus 38 A~~YD~~N~~~S----~G~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml 108 (265)
+.+||++|+-++ ++++..|= +.++....|+.. -.+.|++||+.|.++..|+.+.. +++++|+|+..+
T Consensus 3 ~~~~~ll~relaadDPW~~~s~wYE~~r~~~~l~aaLp~~r-y~~alE~GCa~G~lT~~LA~RCd---rLla~Dvs~~Av 78 (201)
T pfam05401 3 DGNYQLLNRELAADDPWRLDSNPFEQERHTQMLRLSLAQGT-IANALEVGCAAGAFTERLAPYCQ---RLTVIDVMPEAI 78 (201)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH-HHHHCCCCCCCCHHHHHHHHHHH---HHHHHCCCHHHH
T ss_conf 43788998751579997887768789999999998678343-30020435662487899999874---673213629999
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf 11110000011222222222223334575544674036642---01321344320121000485211776305544551
Q gi|254780624|r 109 SVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG---IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265)
Q Consensus 109 ~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~---l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265)
+.|++|++.. ++|.+.+++.-. ..+.++||.|++|-. |...++...+++++.+.|.|||.++ |+.+.+.
T Consensus 79 ~~Ar~Rla~~---~hV~v~~~~vp~-~wP~~~FDLIV~SEVlYYL~d~a~lr~~~~~~v~~LaP~G~Lv---fgsarda 150 (201)
T pfam05401 79 ARARLRMKKW---SHISWIVSDVQQ-FSTNELFDLIVVAEVLYYLGDVAEMRGAVRNLVSMLAPDGQLV---FGSARDA 150 (201)
T ss_pred HHHHHHHCCC---CCCEEEECCCCC-CCCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE---EECCCCC
T ss_conf 9999985579---982898256666-5998886279751477861879999999999999718996599---7304510
No 60
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.31 E-value=3e-11 Score=92.66 Aligned_cols=154 Identities=19% Similarity=0.271 Sum_probs=103.5
Q ss_pred HHHC--CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 7614--80179999998520644679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 47 LMSL--GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 47 ~~S~--G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
=|+| |.|.. -+.+++.+.....++.+|||+|||||.++...++.. . .+|+|+|+.+.-++.|++++...+....+
T Consensus 138 gmAFGTG~H~T-T~lcl~~l~~~~~~~~~vLDvG~GSGILaIaA~klG-a-~~v~a~DiD~~Av~~a~eN~~lN~v~~~~ 214 (298)
T PRK00517 138 GLAFGTGTHPT-TRLCLEWLEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KPVLAIDIDPQAVEAARENAELNGVDDRL 214 (298)
T ss_pred CCCCCCCCCHH-HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC-C-CEEEEEECCHHHHHHHHHHHHHCCCCCCE
T ss_conf 43456777747-999999998435468868871577069999999749-9-84999989899999999999986998426
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCHH-HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHH
Q ss_conf 2222223334575544674036642013213-443201210004852117763055445510112345653111332102
Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTLAFGIRNMPH-ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGR 203 (265)
Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d-~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~ 203 (265)
.+..++... ....||+|+.-- + .+ ......++.+.|+|||.+++- -+
T Consensus 215 ~~~~~~~~~---~~~~~DlvvANI-l---a~vl~~l~~~~~~~l~~~G~lilS-----------GI-------------- 262 (298)
T PRK00517 215 ELYLPEDQP---LEGKADVIVANI-L---ANPLIELAPDLAALVKPGGRLILS-----------GI-------------- 262 (298)
T ss_pred EEECCCCCC---CCCCCCEEEEEC-C---HHHHHHHHHHHHHHHCCCCEEEEE-----------CC--------------
T ss_conf 896166434---467646899731-5---899999999999973899799992-----------78--------------
Q ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEE
Q ss_conf 54288768657899999689989999999975995379998556649999
Q gi|254780624|r 204 FIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALH 253 (265)
Q Consensus 204 ~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~ 253 (265)
+. . ..+++.+.++++||+.++.. -..+=+++.
T Consensus 263 -l~--~--------------~~~~v~~~~~~~g~~~~~~~-~~~~W~~l~ 294 (298)
T PRK00517 263 -LA--E--------------QADEVLEAYEDAGFTLDEVA-EREEWVRIV 294 (298)
T ss_pred -CH--H--------------HHHHHHHHHHHCCCEEEEEE-EECCEEEEE
T ss_conf -48--8--------------99999999998799897886-039889999
No 61
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=99.29 E-value=3.2e-12 Score=98.93 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=85.2
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 77986023355777776641388632787213322221111000001122222222222333457554467403664201
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIR 151 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~ 151 (265)
.|+||+|||.|..+..|+++. ..|+++|+|+..|+.+++.+.++++ +|++...|.++..++. .||.|+++-++.
T Consensus 32 gk~LDlgcG~GRNslyLa~~G---~~VtavD~n~~aL~~l~~ia~~e~l--~i~~~~~Din~~~~~e-~YD~IisTVvfm 105 (192)
T pfam03848 32 GKALDLGCGQGRNSLFLSLLG---YDVTAVDHNENSIANLQDIKEKENL--DIPTALYDINSASIDE-NYDFILSTVVLM 105 (192)
T ss_pred CCEEEECCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCC-CCCEEEEEEEEE
T ss_conf 746660478973189998689---9179997999999999999997099--7526873155568767-768798888777
Q ss_pred CC--HHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 32--1344320121000485211776305
Q gi|254780624|r 152 NM--PHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 152 ~~--~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
.+ +-.+..+.+|.+.++|||..+|+-+
T Consensus 106 FL~~~~ip~iI~~mq~~T~pGGynlIv~a 134 (192)
T pfam03848 106 FLQAERIPAIIANMQEHTNVGGYNLIVAA 134 (192)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 31867877999999985289988999976
No 62
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=3.8e-12 Score=98.46 Aligned_cols=110 Identities=21% Similarity=0.339 Sum_probs=87.4
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC-CCC-
Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233-345-
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE-TLP- 135 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~-~lp- 135 (265)
-..+..|++.++ ..++|+|||||.++.++++.. +.++|+++|..++.++..++++++.+. .|++.++|+|- .|+
T Consensus 30 a~~l~kL~l~~~--~~vwDIGaGtGsVsiEaa~~~-~~g~V~AIE~~~~a~~li~~N~~rfgv-~nv~ii~g~ape~L~~ 105 (196)
T PRK07402 30 LLLISQLRLEPD--SVLWDIGAGTGTIPVEAALLC-PKGRVIAIERDEEVANLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHH
T ss_conf 999997089999--999994788779999999878-998899997688899999998997299-9879997263666840
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 75544674036642013213443201210004852117763
Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
++ ..+|.|++.=+ .+....++.+.+.|+|||++++.
T Consensus 106 l~-p~pD~vFIGGg----~~l~~il~~~~~~L~pgGriVin 141 (196)
T PRK07402 106 LA-PAPDRICIEGG----RPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CC-CCCCEEEECCC----CCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 89-99999998489----68899999999867999899998
No 63
>KOG1975 consensus
Probab=99.28 E-value=2.1e-12 Score=100.06 Aligned_cols=175 Identities=19% Similarity=0.306 Sum_probs=110.1
Q ss_pred HHHH-HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC-----CCCCCC
Q ss_conf 9999-9985206446799779860233557777766413886327872133222211110000011222-----222222
Q gi|254780624|r 55 FWKE-AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD-----CITFIE 128 (265)
Q Consensus 55 ~Wr~-~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~-----~i~~~~ 128 (265)
-|.+ .++..-. .+...+||+|||-|--.+..-+.. -.+++|+||++.-++.|++|........ .+.|+.
T Consensus 104 NwIKs~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~ 178 (389)
T KOG1975 104 NWIKSVLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIA 178 (389)
T ss_pred HHHHHHHHHHHH---CCCCCCCEECCCCCCCHHHHHHHC--CCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 789999999986---122300000567762076765514--563576534340099999999999866641365169997
Q ss_pred CCCC------CCCCCCCCCCCCEEEEEECCC-H---HHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHH-H----H
Q ss_conf 2233------345755446740366420132-1---3443201210004852117763055445510112345-6----5
Q gi|254780624|r 129 ANAE------TLPFEANSFDACTLAFGIRNM-P---HITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYD-M----W 193 (265)
Q Consensus 129 ~da~------~lp~~d~sfD~V~~sf~l~~~-~---d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~-~----y 193 (265)
+|.. .++++|.+||+|+|.|++|.- . ....+|+++.+.|||||.|+ -+.|+...+.+-+. . |
T Consensus 179 ~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI---gTiPdsd~Ii~rlr~~e~~~~ 255 (389)
T KOG1975 179 ADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI---GTIPDSDVIIKRLRAGEVERF 255 (389)
T ss_pred ECCCHHHHHHHCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEE---EECCCHHHHHHHHHHCCCHHH
T ss_conf 14416689874257898855565545675431338889999998996358885799---846968999999985111110
Q ss_pred HHCH--------------HHHHHHHHCCCHHHHH-HHHHHHHHCC----CHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 3111--------------3321025428876865-7899999689----9899999999759953799985
Q gi|254780624|r 194 SFKV--------------IPQLGRFIAGDEEPYQ-YLIESIRRFP----NQQDFAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 194 ~~~i--------------iP~~g~~~~~~~~~Y~-yL~~Si~~f~----~~~el~~~l~~aGF~~v~~~~~ 245 (265)
.+-| +|+.|. .|+ ||.+.+. .| .=..+..+.++-|++-|..++|
T Consensus 256 gNdiykv~y~~~~~k~~~~p~fG~-------kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv~~k~F 318 (389)
T KOG1975 256 GNDIYKVTYEIEFQKEFDVPPFGA-------KYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELVFVKPF 318 (389)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCC-------EEEEECCCCCC-CCCEEEEHHHHHHHHHHCCCEEEEECCH
T ss_conf 460146750032133468897653-------38997044557-7510401599999998629589884268
No 64
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=99.28 E-value=2e-11 Score=93.76 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=93.8
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 9985206446799779860233557777766413886327872133222211110000011222222222223334575-
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE- 137 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~- 137 (265)
.++..+...+| .+||+.|+|.|.++..|++..++.++|+..|+.++..+.|++.....++..+|++.+.|+.+-.|+
T Consensus 93 ~I~~~ldi~PG--~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~ 170 (309)
T pfam08704 93 LIIMMLELKPG--SVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDT 170 (309)
T ss_pred HHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC
T ss_conf 99998098999--9999836784299999999748886599984478999999999987498750588985200136664
Q ss_pred --CCCCCCCEEEEEECCCHHHHHHHCCCCHHCC-CCCEEEE
Q ss_conf --5446740366420132134432012100048-5211776
Q gi|254780624|r 138 --ANSFDACTLAFGIRNMPHITLVLQEIYRILK-CGGRLLV 175 (265)
Q Consensus 138 --d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLK-pGG~~~i 175 (265)
++.+|+|+. .+|+|-.++..+.++|| |||++++
T Consensus 171 ~~~~~~D~VfL-----Dlp~PW~ai~~~~~~Lk~~Gg~l~~ 206 (309)
T pfam08704 171 EVSNKADAVFL-----DLPAPWEAIPHAAKALKVEGGRLCS 206 (309)
T ss_pred CCCCCCCEEEE-----CCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 45664358997-----5899799889999860689968999
No 65
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.28 E-value=1.3e-11 Score=94.89 Aligned_cols=160 Identities=24% Similarity=0.333 Sum_probs=107.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999999852064467997798602335577777664138863278721332222111100000112-2222222222333
Q gi|254780624|r 55 FWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL-QDCITFIEANAET 133 (265)
Q Consensus 55 ~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~-~~~i~~~~~da~~ 133 (265)
.|.....+.-..++.++.+|||.|.|-|..+...+++.. .+|+-++-.++-|+.|+-+--..++ ..+|+.+.||+.+
T Consensus 119 P~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 119 PLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred CHHHHHHHHHEECCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHH
T ss_conf 078887566244436687844324671389999987587--489999608772774135889842020031786165999
Q ss_pred C--CCCCCCCCCCEE---EEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCC
Q ss_conf 4--575544674036---64201321344320121000485211776305544551011234565311133210254288
Q gi|254780624|r 134 L--PFEANSFDACTL---AFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGD 208 (265)
Q Consensus 134 l--p~~d~sfD~V~~---sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~ 208 (265)
+ .|+|+|||+|.- -|++-.--=-+...+|++|+|||||++.-- .+.|..
T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY-vG~Pg~------------------------- 250 (287)
T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY-VGNPGK------------------------- 250 (287)
T ss_pred HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCC-------------------------
T ss_conf 974188653016860797331023576899999999970769807997-279874-------------------------
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEE
Q ss_conf 7686578999996899899999999759953799985566499
Q gi|254780624|r 209 EEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVA 251 (265)
Q Consensus 209 ~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~ 251 (265)
-|+-+ .-+......|+++||.+|+.....+|+++
T Consensus 251 --ryrG~-------d~~~gVa~RLr~vGF~~v~~~~~~~gv~A 284 (287)
T COG2521 251 --RYRGL-------DLPKGVAERLRRVGFEVVKKVREALGVVA 284 (287)
T ss_pred --CCCCC-------CHHHHHHHHHHHCCCEEEEEEHHCCCEEE
T ss_conf --02467-------71478999998617344432321062588
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=99.26 E-value=8.8e-12 Score=96.09 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=91.3
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC-----
Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233-----
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE----- 132 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~----- 132 (265)
--++..|.+++++ .+++|||||||.++.++++..++.++|+++|=+++.++.-++++++.+...++..+.+||-
T Consensus 9 ~l~L~~L~l~~~~-~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~ 87 (135)
T TIGR02469 9 ALTLAKLRLRPGD-SVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLN 87 (135)
T ss_pred HHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 9999871789999-468896057483899999735986079998537689879999999828999632563556843336
Q ss_pred -CCCCC---CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf -34575---54467403664201321344320121000485211776
Q gi|254780624|r 133 -TLPFE---ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 133 -~lp~~---d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
+.|.. ..-+|+|+++=+= ...+..|+.+.+.|+|||++++
T Consensus 88 ~~~~~~~~~~~~~Da~fvGGs~---~~~~~il~~~~~~l~~GGr~v~ 131 (135)
T TIGR02469 88 SDAPEDSAKLPEPDAVFVGGSG---GKLEEILEAVERRLRPGGRIVL 131 (135)
T ss_pred CCCCHHHCCCCCCCEEEECCCC---HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 7777100588746888883897---1789999999850596888888
No 67
>KOG1269 consensus
Probab=99.25 E-value=2.1e-12 Score=100.11 Aligned_cols=118 Identities=30% Similarity=0.375 Sum_probs=100.2
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222222333457554
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN 139 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~ 139 (265)
-+..+.....+..+++|+|||-|..+..++... .+.++|+|.++..+.++......+.+..+-.++.+|..+.||+|+
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn 177 (364)
T KOG1269 100 GIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDN 177 (364)
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCC
T ss_conf 168776327654111224767675167788862--577517876799999988777888764202352255514887746
Q ss_pred CCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf 4674036642013213443201210004852117763055
Q gi|254780624|r 140 SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 140 sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
+||.|-+-.+..|.++...+++|++||+||||.+++-|+.
T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHHH
T ss_conf 6674898761244786999999885036777168848888
No 68
>KOG2940 consensus
Probab=99.24 E-value=8e-12 Score=96.36 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=83.6
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 79860233557777766413886327872133222211110000011222222222223334575544674036642013
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRN 152 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~ 152 (265)
.++|+|||-|.++..+.... -.+++-+|.|-.|++.++. ++..+ -.+.+..+|-|.|+|++||||+|.+|.++|+
T Consensus 75 ~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~-~qdp~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940 75 TAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRD-AQDPS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CEEECCCCHHHHHHHHHHCC--HHHEEEEECCHHHHHHHHC-CCCCC--EEEEEEECCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 20440655446568877525--1340664041679997532-68985--3799972551015655350111265433456
Q ss_pred CHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 21344320121000485211776
Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
+.|++..+..++..|||+|.|+-
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940 150 TNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 40483689998874289751216
No 69
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.24 E-value=1.1e-11 Score=95.41 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=85.3
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
-++++.+.++++ .+|||||||||..+-.+++.. ++|+++|..+.+.+.|++++.+.+. .||.++++|...-.-+
T Consensus 68 A~ml~~L~l~~~--~~VLeIGtGsGY~tAlLa~l~---~~V~siE~~~~l~~~a~~~l~~~~~-~nv~~~~gdg~~g~~~ 141 (213)
T PRK00312 68 ARMTELLELKPG--DRVLEIGTGSGYQAAVLAHLV---ERVFSVERIKTLQWQAKRRLKQLGL-HNVSVRHGDGWKGWPA 141 (213)
T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC
T ss_conf 999998436899--759996598609999999862---9289994289999999999998499-8769996887667876
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 544674036642013213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
...||.|.++-+..++| + .+..-|+|||++++-
T Consensus 142 ~~pfD~Iii~~a~~~~P--~----~l~~qL~~gGrLV~P 174 (213)
T PRK00312 142 YAPFDRILVTAAAPEIP--R----ALLDQLAEGGILVAP 174 (213)
T ss_pred CCCCCEEEEEECCHHHH--H----HHHHHCCCCCEEEEE
T ss_conf 69724899984341225--9----999845329799999
No 70
>KOG1331 consensus
Probab=99.24 E-value=7.2e-12 Score=96.63 Aligned_cols=132 Identities=24% Similarity=0.368 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999999999876342115766761480179999998520644679977986023355777776641388632787213
Q gi|254780624|r 24 EEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADI 103 (265)
Q Consensus 24 ~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~ 103 (265)
+--+++|.++||++|+.. |--.++.|.+ ....+...+. +..+||+|||-|.. +. . .|.+.++|+|+
T Consensus 8 eleqeyVh~IYd~ia~~f-------s~tr~~~Wp~-v~qfl~~~~~-gsv~~d~gCGngky---~~-~-~p~~~~ig~D~ 73 (293)
T KOG1331 8 ELEQEYVHSIYDKIATHF-------SATRAAPWPM-VRQFLDSQPT-GSVGLDVGCGNGKY---LG-V-NPLCLIIGCDL 73 (293)
T ss_pred HHHHHHHHHHHHHHHHHC-------CCCCCCCCHH-HHHHHHCCCC-CCEEEECCCCCCCC---CC-C-CCCCEEEECCH
T ss_conf 999987579998765530-------6544476178-9999850687-64045424687655---76-7-98631540302
Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH---HHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 322221111000001122222222222333457554467403664201321---3443201210004852117763
Q gi|254780624|r 104 NNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP---HITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 104 s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~---d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
|...+..|+..-. .....+||.++|+++.+||.+.+.=.+||+. .+.++++|+.|+|||||..+|-
T Consensus 74 c~~l~~~ak~~~~-------~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331 74 CTGLLGGAKRSGG-------DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHCCCCCCCCC-------CEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 2322053334798-------62561244428987876000323354444436778999999999872678856899
No 71
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=1.5e-11 Score=94.64 Aligned_cols=109 Identities=19% Similarity=0.357 Sum_probs=86.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
-.+++.+.++++ .+|||||||+|..+-.+++..++.+.|+.+|+-++..+.|++++.+.+. .||.+++||...=--+
T Consensus 65 A~MlElL~l~pg--~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~-~NV~vv~GDG~~G~pe 141 (317)
T PRK13943 65 ALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPE 141 (317)
T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC
T ss_conf 999997178999--8689965774389999999848787599998679999999999997799-8649997998888866
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 54467403664201321344320121000485211776
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
...||.|..+-+...+| .+ ..+=|||||++++
T Consensus 142 ~APYD~IIVTAaa~~IP---~a---LldQLk~GGRLVi 173 (317)
T PRK13943 142 FSPYDVIFVTVGVDEVP---ET---WFTQLKEGGRVIV 173 (317)
T ss_pred CCCCCEEEEEECCCCCC---HH---HHHHCCCCCEEEE
T ss_conf 79977899985276489---99---9996185969999
No 72
>KOG1271 consensus
Probab=99.23 E-value=3e-11 Score=92.70 Aligned_cols=136 Identities=19% Similarity=0.344 Sum_probs=100.0
Q ss_pred CCCC-EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-
Q ss_conf 7997-79860233557777766413886327872133222211110000011222222222223334575544674036-
Q gi|254780624|r 69 SKDY-RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL- 146 (265)
Q Consensus 69 ~~~~-~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~- 146 (265)
++.+ +|||+|||.|.+...|++..- ..+++|+|.|+..++.|+..++..+..+.|+|.+.|.....+....||+|.-
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271 65 SKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred CCCCCCEEECCCCCHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEC
T ss_conf 22432116615796188999887138-88864531578899999878875278853168873225775555432389605
Q ss_pred ----EEEECC--C-HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf ----642013--2-134432012100048521177630554455101123456531113321025428876865789999
Q gi|254780624|r 147 ----AFGIRN--M-PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESI 219 (265)
Q Consensus 147 ----sf~l~~--~-~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si 219 (265)
+-+|+. . ..+...+.-+-+.|+|||.|+|.-.
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC----------------------------------------- 182 (227)
T KOG1271 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC----------------------------------------- 182 (227)
T ss_pred CCEEEEECCCCCCCCCEEEEHHHHHHCCCCCCEEEEEEC-----------------------------------------
T ss_conf 741225507777665434435568630388967999855-----------------------------------------
Q ss_pred HHCCCHHHHHHHHHHCCCCEEE---EEECCCC
Q ss_conf 9689989999999975995379---9985566
Q gi|254780624|r 220 RRFPNQQDFAAVISAAGFSNVS---FTNYTNG 248 (265)
Q Consensus 220 ~~f~~~~el~~~l~~aGF~~v~---~~~~~~G 248 (265)
+ -+.+|+...+++.||+... +-.|.||
T Consensus 183 -N-~T~dELv~~f~~~~f~~~~tvp~ptF~Fg 212 (227)
T KOG1271 183 -N-FTKDELVEEFENFNFEYLSTVPTPTFMFG 212 (227)
T ss_pred -C-CCHHHHHHHHHCCCEEEEEEECCCEEEEC
T ss_conf -7-65899999972597499996055258865
No 73
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=4.9e-11 Score=91.27 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=99.6
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222222333457554
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN 139 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~ 139 (265)
+++.+... .+...+||+|||+|-++..++... +.++++|+|+|+..|+.|++++...+. +++|+++|..+ |+ ..
T Consensus 100 ~l~~~~~~-~~~~~~lDlGtGSG~I~isla~~~-p~~~v~avDiS~~Al~~A~~Na~~~~~--~v~~~~~dl~~-~~-~~ 173 (285)
T PRK09329 100 IIGYLQSH-KEIQTFYDVCCGSGCIGLAIKKHC-PHVHVVLSDICPQALAVAKSNAKSNGL--DVDFLLGDLFA-PF-SR 173 (285)
T ss_pred HHHHHHHC-CCCCEEEEECCCHHHHHHHHHHHC-CCCEEEHHHCCHHHHHHHHHHHHHCCC--CEEEEECCHHH-HH-CC
T ss_conf 99998618-777778884541799999999858-986588033769999999999997299--47999763003-33-47
Q ss_pred CCCCCEEE--EE-----------ECCC-------------HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 46740366--42-----------0132-------------1344320121000485211776305544551011234565
Q gi|254780624|r 140 SFDACTLA--FG-----------IRNM-------------PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMW 193 (265)
Q Consensus 140 sfD~V~~s--f~-----------l~~~-------------~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y 193 (265)
.||+|+|- |. ++++ ....+.++++.+.|+|||.+++ |++.
T Consensus 174 ~~DlIvSNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~-Eig~------------- 239 (285)
T PRK09329 174 PADAFVCNPPYLSFKEFFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWL-EIGS------------- 239 (285)
T ss_pred CCCEEEECCCCCCHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECC-------------
T ss_conf 67889989998884445449875543670998847973899999999999996004988999-9685-------------
Q ss_pred HHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEEC
Q ss_conf 311133210254288768657899999689989999999975995379998556649999998116
Q gi|254780624|r 194 SFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCE 259 (265)
Q Consensus 194 ~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~ 259 (265)
-..+.+.+++++.||...-++++ .|.-....+.|..
T Consensus 240 -----------------------------~Q~~~v~~l~~~~g~~~~v~kDl-~G~~R~l~~~~~~ 275 (285)
T PRK09329 240 -----------------------------SQGESVKKIFAKHGISGRVLQDL-AGLDRFFFLENQA 275 (285)
T ss_pred -----------------------------HHHHHHHHHHHHCCCCCEEEECC-CCCCCEEEEEECC
T ss_conf -----------------------------48999999999669964281179-9995389998368
No 74
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1e-10 Score=89.17 Aligned_cols=140 Identities=21% Similarity=0.335 Sum_probs=95.4
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--EEE
Q ss_conf 798602335577777664138863278721332222111100000112222222222233345755446740366--420
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA--FGI 150 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s--f~l 150 (265)
+|||+|||||-++..++...+ .++|+|+|+|+..|+.|++++...++ .++.++++|..+ +++. .||+|++- |.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~~~-~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PLRG-KFDLIVSNPPYIP 188 (280)
T ss_pred CEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCHHH-CCCC-CCCEEEECCCCCC
T ss_conf 189965883199999996189-88799998999999999999998289-747987400333-4688-8577996899888
Q ss_pred CC-----------------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCC
Q ss_conf 13-----------------------2134432012100048521177630554455101123456531113321025428
Q gi|254780624|r 151 RN-----------------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAG 207 (265)
Q Consensus 151 ~~-----------------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~ 207 (265)
.. ..-..+.+.++.+.|+|||.+++ |.
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~----------------------------- 238 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EI----------------------------- 238 (280)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EE-----------------------------
T ss_conf 852113742135897998724877789999999989987286828999-97-----------------------------
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CCEEEEEECCCCEEEEEEEEEEC
Q ss_conf 87686578999996899899999999759-95379998556649999998116
Q gi|254780624|r 208 DEEPYQYLIESIRRFPNQQDFAAVISAAG-FSNVSFTNYTNGVVALHSGWKCE 259 (265)
Q Consensus 208 ~~~~Y~yL~~Si~~f~~~~el~~~l~~aG-F~~v~~~~~~~Gi~~i~~g~Kp~ 259 (265)
.+-..+.+.+++.+.| |..+......+|...+..+.+-.
T Consensus 239 -------------g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~~ 278 (280)
T COG2890 239 -------------GLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKLRS 278 (280)
T ss_pred -------------CCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECC
T ss_conf -------------6984899999999749844766551456763588876024
No 75
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.20 E-value=1.8e-11 Score=94.13 Aligned_cols=107 Identities=27% Similarity=0.332 Sum_probs=84.6
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345755
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265)
.++......++ ..+||..||||-++++.+... ....++|+|+++.|++.|+.++...+....|++.++|+.++|+++
T Consensus 19 ~l~~la~~~~g--~~vlDP~CGSGtilIEAa~~~-~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~ 95 (171)
T pfam01170 19 AMVNLAGWKPG--DPLLDPFCGSGTILIEAALMG-ANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLN 95 (171)
T ss_pred HHHHHHCCCCC--CEEEECCCCCCHHHHHHHHHH-CCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCC
T ss_conf 99998589999--978868998789999999961-358953675879999999999998289984699976665387987
Q ss_pred CCCCCCEE--EEEECCC------HHHHHHHCCCCHHCC
Q ss_conf 44674036--6420132------134432012100048
Q gi|254780624|r 139 NSFDACTL--AFGIRNM------PHITLVLQEIYRILK 168 (265)
Q Consensus 139 ~sfD~V~~--sf~l~~~------~d~~~~l~e~~RvLK 168 (265)
++||+|++ -||.|-= .-.+..++++.|+|+
T Consensus 96 ~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~~ 133 (171)
T pfam01170 96 GSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVLR 133 (171)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 88318998898201136545699999999999998689
No 76
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=99.18 E-value=3.2e-11 Score=92.50 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=96.4
Q ss_pred CCEECCHHHHHHHHHHHHHHH--------HH---HHHH-------HHHHHHC--CCHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 521279899999999999876--------34---2115-------7667614--80179999998520644679977986
Q gi|254780624|r 17 GFREVPEEEKQNMVNHVFSRV--------SH---RYDV-------MNDLMSL--GLHRFWKEAMVTNLNPRKSKDYRVLD 76 (265)
Q Consensus 17 Gf~~v~~~~k~~~v~~~F~~i--------A~---~YD~-------~N~~~S~--G~~r~Wr~~~i~~l~~~~~~~~~iLD 76 (265)
.++.+++++..+.-++.|.-+ -+ .|.. ++-=|+| |.|.. -+.+++.+.....++.+|||
T Consensus 88 ~~~~~~~~DW~~~wk~~f~P~~ig~~~~I~PsW~~~~~~~~~~I~idPGmAFGTG~H~T-T~lcl~~l~~~~~~~~~vlD 166 (294)
T pfam06325 88 TVEEVEEEDWARAWKKYFHPVRIGERLTIVPSWEDYPEPDAVNIELDPGMAFGTGTHPT-TALCLEALESLVKPGETVLD 166 (294)
T ss_pred EEEECCCHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCHH-HHHHHHHHHHHCCCCCEEEE
T ss_conf 89980622389999874897797582999689877999763589866643456777757-99999999865036986785
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHH
Q ss_conf 02335577777664138863278721332222111100000112222222222233345755446740366420132134
Q gi|254780624|r 77 VAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHI 156 (265)
Q Consensus 77 iGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~ 156 (265)
+|||||.++...++... .+|+|+|+.+.-++.|++++...+...++.... ..+ .....||+|++-- + ..-.
T Consensus 167 ~GcGSGILaIaA~klGa--~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~--~~~--~~~~~~DlIvANI-l--a~~L 237 (294)
T pfam06325 167 VGCGSGILAIAALKLGA--KKVVGVDIDPVAVRAAKENAELNGVEAQLEVYL--PGD--LPEGKADVVVANI-L--ADPL 237 (294)
T ss_pred ECCCHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEC--CCC--CCCCCCCEEEEHH-C--HHHH
T ss_conf 05650899999997599--968999888999999999999769983179964--431--5566457898410-8--9999
Q ss_pred HHHHCCCCHHCCCCCEEEE
Q ss_conf 4320121000485211776
Q gi|254780624|r 157 TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 157 ~~~l~e~~RvLKpGG~~~i 175 (265)
......+.+.|+|||.+++
T Consensus 238 ~~l~~~~~~~l~~~G~lil 256 (294)
T pfam06325 238 IELAPDIYALVKPGGYLIL 256 (294)
T ss_pred HHHHHHHHHHHCCCCEEEE
T ss_conf 9999999997389989999
No 77
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.7e-11 Score=90.39 Aligned_cols=152 Identities=24% Similarity=0.323 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 80179999998520644679977986023355777776641388632787213322221111000001122222222222
Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEAN 130 (265)
Q Consensus 51 G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d 130 (265)
|.|.. -+.+++.+.....++.++||+|||+|.+++..++... .+++|+|+-|..++.|++++...+....+.....+
T Consensus 144 G~HpT-T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~ 220 (300)
T COG2264 144 GTHPT-TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL 220 (300)
T ss_pred CCCHH-HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCC
T ss_conf 87801-7999999998605898799826781599999998198--66899718889999999999976996022003456
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHH-HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCH
Q ss_conf 3334575544674036642013213-443201210004852117763055445510112345653111332102542887
Q gi|254780624|r 131 AETLPFEANSFDACTLAFGIRNMPH-ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDE 209 (265)
Q Consensus 131 a~~lp~~d~sfD~V~~sf~l~~~~d-~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~ 209 (265)
....+. ...||+|++.- +.+ ..+...++.+.|||||++++-- + +. +
T Consensus 221 ~~~~~~-~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSG-----------I---------------l~-~- 267 (300)
T COG2264 221 LLEVPE-NGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSG-----------I---------------LE-D- 267 (300)
T ss_pred CHHHCC-CCCCCEEEEHH----HHHHHHHHHHHHHHHCCCCCEEEEEE-----------E---------------CH-H-
T ss_conf 300013-68656898605----27899999999998708893699986-----------2---------------07-5-
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEE
Q ss_conf 68657899999689989999999975995379998556649999
Q gi|254780624|r 210 EPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALH 253 (265)
Q Consensus 210 ~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~ 253 (265)
..+...+.+.++||..+++... .+=++++
T Consensus 268 --------------q~~~V~~a~~~~gf~v~~~~~~-~eW~~i~ 296 (300)
T COG2264 268 --------------QAESVAEAYEQAGFEVVEVLER-EEWVAIV 296 (300)
T ss_pred --------------HHHHHHHHHHHCCCEEEEEEEC-CCEEEEE
T ss_conf --------------8999999998589768689700-8779999
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.12 E-value=8.9e-11 Score=89.61 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=83.0
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+-+++.+.+.. ..+|||+|||.|.++..+++.. |..+|+.+|++...++.|+..+...+... ++..+|+.+ ..
T Consensus 186 ~lLL~~l~~~~--~g~VLDlGCG~Gvi~~~la~~~-p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~--~v~~sd~~~-~v- 258 (342)
T PRK09489 186 QLLLSTLTPHT--KGKVLDVGCGAGVLSAVLAQHS-PKIRLTLCDVSAPAVEASRATLAANGLEG--EVFASNVFS-EI- 258 (342)
T ss_pred HHHHHHCCCCC--CCCEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCCCC--EEEECCCCC-CC-
T ss_conf 99997378324--8847860678179999999869-99769999688999999999899809886--899756445-65-
Q ss_pred CCCCCCCEEE--E--EECC-CHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 5446740366--4--2013-213443201210004852117763
Q gi|254780624|r 138 ANSFDACTLA--F--GIRN-MPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~s--f--~l~~-~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
++.||.|+|- | |+.- ..=.++.++++.++|+|||.+.++
T Consensus 259 ~~~fD~IvsNPPFH~G~~~~~~i~~~fi~~A~~~L~~gG~L~iV 302 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 56789899688521575265899999999999861249889999
No 79
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=99.12 E-value=7.8e-11 Score=89.98 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=112.8
Q ss_pred CHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 017999-----999852064467997798602335577777664138863278721332222111100000112222222
Q gi|254780624|r 52 LHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265)
Q Consensus 52 ~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265)
+|..|+ .+++.++.+..+ ..|||||||.|.....+...... .++|+|+..=.+.+-..-..=.+...++.+
T Consensus 100 iD~EW~S~~KWDR~l~~~~pL~~--~~i~DVGC~~GY~~~~M~~~Gak--~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l 175 (316)
T TIGR00452 100 IDSEWRSDIKWDRVLPHLSPLKG--RTILDVGCGSGYHLWRMLGEGAK--LLVGIDPTELFLCQFEAVRKLLDNDKRAIL 175 (316)
T ss_pred ECCCCCCCCCHHHHCCCCCCCCC--CEEEEECCCCHHHHHHHHHCCCC--EEEECCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 50430666535543124665457--77898336870688977620782--787436578999999999987242355754
Q ss_pred CCCCCCCCC-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 222233345-7554467403664201321344320121000485211776305544551011234565311133210254
Q gi|254780624|r 127 IEANAETLP-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFI 205 (265)
Q Consensus 127 ~~~da~~lp-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~ 205 (265)
+---+|+|+ ...+.||.|+|--.|-|=-.|-..|+.++.-|+.+|.+++--+ ..+.+. + -.++|. .-.
T Consensus 176 ~~LGiE~l~~~~pnAFD~vFs~GVLYHRkSPLe~L~~L~~~L~~~GELVL~TL-viD~d~-----~---~~LvP~--~~Y 244 (316)
T TIGR00452 176 LPLGIEQLQELKPNAFDTVFSLGVLYHRKSPLEHLKQLKDQLVKKGELVLETL-VIDGDL-----N---TVLVPK--DRY 244 (316)
T ss_pred ECCCHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE-EECCCC-----C---EEECCC--CCC
T ss_conf 03670222320764120312202021155708999999999875793586534-660776-----7---586475--444
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 28876865789999968998999999997599537999855
Q gi|254780624|r 206 AGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265)
Q Consensus 206 ~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265)
++.+..| .. |+...|.+++++.||+++++-+..
T Consensus 245 AkMkNVY--FI------PSv~aL~~Wl~kvGF~~~~i~~V~ 277 (316)
T TIGR00452 245 AKMKNVY--FI------PSVSALKNWLEKVGFENVRILDVL 277 (316)
T ss_pred CCEEEEE--EH------HHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 2200014--20------238999888874495314787510
No 80
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=99.11 E-value=6.4e-11 Score=90.51 Aligned_cols=102 Identities=22% Similarity=0.280 Sum_probs=85.6
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC-C----CCCCCCCC
Q ss_conf 977986023355777776641388632787213322221111000001122222222222333-45-7----55446740
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP-F----EANSFDAC 144 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp-~----~d~sfD~V 144 (265)
..+||++|++||..+.++++..++.++|+.+|+.+++.+.|++.+.+.+..++|+++.|||.+ |+ + ++++||+|
T Consensus 45 ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~v 124 (204)
T pfam01596 45 AKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFA 124 (204)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEE
T ss_conf 87899983432599999998489996899998048999999999997798744799987499999999844777764389
Q ss_pred EEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 3664201321344320121000485211776
Q gi|254780624|r 145 TLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 145 ~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
++- + .=.+....+..+.+.|+|||.+++
T Consensus 125 FiD-a--dK~~Y~~y~e~~~~lL~~gGiii~ 152 (204)
T pfam01596 125 FVD-A--DKSSYPNYYERLLELVKVGGLIAI 152 (204)
T ss_pred EEE-C--CHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 981-8--887779999999986369809999
No 81
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=99.05 E-value=4.7e-10 Score=84.95 Aligned_cols=169 Identities=22% Similarity=0.396 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHC--CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 01799999985206--4467997798602335577777664138863278721332222111100000112222222222
Q gi|254780624|r 52 LHRFWKEAMVTNLN--PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA 129 (265)
Q Consensus 52 ~~r~Wr~~~i~~l~--~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~ 129 (265)
+||.--+-+++.|- .+...-.+++|||.|-|+++-.+.+.+| +-++|-+.+ |+.|+..+++++++|+.++++-+--
T Consensus 129 ~HRSN~~l~~~LL~~~A~L~~V~~lIDVGGGIGDI~AAl~~~FP-~L~~T~~NL-P~A~DLV~EN~A~KG~ADR~~~~A~ 206 (306)
T TIGR02716 129 LHRSNIKLAIELLLKRAKLDDVKKLIDVGGGIGDIAAALLKAFP-ELDVTLLNL-PSALDLVRENVAEKGLADRIRGVAV 206 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCC-CCCEEEECC-CCHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 76768999999999875163132543338887789999997377-523231205-4055677665541451004663156
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCHHH---HHHHCCCCHHCCCCCEEEEEEC--CCCCCCHHHHHHHHHHHCHHHHHHHH
Q ss_conf 233345755446740366420132134---4320121000485211776305--54455101123456531113321025
Q gi|254780624|r 130 NAETLPFEANSFDACTLAFGIRNMPHI---TLVLQEIYRILKCGGRLLVLEF--SEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265)
Q Consensus 130 da~~lp~~d~sfD~V~~sf~l~~~~d~---~~~l~e~~RvLKpGG~~~i~df--~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265)
|.=+=|+|+. |+|..+=-|-. .|- --.++.+|..|+.|||++|+|+ +-|++|.+-.+ +++++ -+|.
T Consensus 207 D~Y~E~YP~~--DAVLF~RILY~-~N~Ql~T~l~~KAyDAl~SGGR~LILDMVI~DP~~PNyDYL----~HY~~-~~GM- 277 (306)
T TIGR02716 207 DIYKESYPEA--DAVLFSRILYS-ANEQLSTILLKKAYDALRSGGRLLILDMVIDDPENPNYDYL----SHYLL-AIGM- 277 (306)
T ss_pred EECCCCCCCC--HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHH----HHHHH-HCCC-
T ss_conf 5033875771--16567788764-46789999999887522578807865434318567771468----99998-7166-
Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 42887686578999996899899999999759953799
Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSF 242 (265)
Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~ 242 (265)
+=|+..|=....+.++|++-||++|+-
T Consensus 278 -----------~FSVL~FK~~A~Y~~~L~~~Gy~DVTl 304 (306)
T TIGR02716 278 -----------GFSVLEFKDQAVYKDLLRSLGYKDVTL 304 (306)
T ss_pred -----------CCHHHHHHHCCCCHHHHHHCCCCEEEC
T ss_conf -----------610121100230079998559720101
No 82
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=99.05 E-value=1.4e-09 Score=81.92 Aligned_cols=104 Identities=24% Similarity=0.363 Sum_probs=84.0
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 79977986023355777776641388632787213322221111000001122222222222333457554467403664
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265)
+...+|+|||.|+|.++..+++.++ ..+++..|+ +..++.|+. ..+|+++.+|..+ |.|. .|+++.+.
T Consensus 100 ~~~~~vvDvGGG~G~~~~~i~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~rv~~~~gdff~-~~P~--aD~y~l~~ 167 (239)
T pfam00891 100 SGLSSLVDVGGGTGALAAAIVRAYP-HIKGIVFDL-PHVIADAPS-------ADRVEFVGGDFFE-SVPE--ADAILLKW 167 (239)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCC-CCEEEEEEC-HHHHHHCCC-------CCCEEEECCCCCC-CCCC--CCEEEEEH
T ss_conf 6787689967981899999999889-983898646-877862764-------6854884487777-8888--51776401
Q ss_pred EECCCHHH--HHHHCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf 20132134--4320121000485211776305544551
Q gi|254780624|r 149 GIRNMPHI--TLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265)
Q Consensus 149 ~l~~~~d~--~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265)
.||+++|. .+.|+++++.|+|||+++|+|+-.|+..
T Consensus 168 vLH~w~d~~~~~iL~~~~~al~~~grllI~e~v~~~~~ 205 (239)
T pfam00891 168 VLHDWSDEDCVKILKRCYEALPPGGKVIVVEMVLPEDP 205 (239)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 43159999999999999997799988999974457999
No 83
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=99.03 E-value=1.2e-10 Score=88.85 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=80.9
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC--CCCCCCCCCEEEEE
Q ss_conf 7986023355777776641388632787213322221111000001122222222222333-45--75544674036642
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP--FEANSFDACTLAFG 149 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp--~~d~sfD~V~~sf~ 149 (265)
.+||||||.|.....+|...+ ...++|+|+...-+..|.+|+.+.....||.++++||+. ++ ++++++|.|.+-
T Consensus 23 i~lEIG~G~G~~l~~~A~~~p-~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~i~-- 99 (199)
T pfam02390 23 LFLEIGCGMGDFLVAMAKKNP-DKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFIN-- 99 (199)
T ss_pred EEEEECCCCCHHHHHHHHHCC-CCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEE--
T ss_conf 499973688899999999789-98789999505999999999998457773787604799999975798864279996--
Q ss_pred ECCCHHH-------------HHHHCCCCHHCCCCCEEEEE
Q ss_conf 0132134-------------43201210004852117763
Q gi|254780624|r 150 IRNMPHI-------------TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 150 l~~~~d~-------------~~~l~e~~RvLKpGG~~~i~ 176 (265)
+||| ...++.+.++|||||.+.+.
T Consensus 100 ---FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~gG~l~~~ 136 (199)
T pfam02390 100 ---FPDPWPKKRHHKRRLLQPEFLKEYARVLKPGGVLHLA 136 (199)
T ss_pred ---CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf ---7999876442440007999999999963889899998
No 84
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-10 Score=85.38 Aligned_cols=108 Identities=21% Similarity=0.256 Sum_probs=84.0
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
-++++.+.++++ .+||+||||+|..+--+++... +|+.+|..++..+.|++++...++. ||..+++|.-.=--+
T Consensus 62 A~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~ 135 (209)
T COG2518 62 ARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHCCCCC--CEEEEECCCCHHHHHHHHHHHC---EEEEEEECHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCC
T ss_conf 999997489999--8688877783099999999748---4999997199999999999976987-349997885568877
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 5446740366420132134432012100048521177630
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
...||.|.++=+ ++.....| .+-|||||++++-.
T Consensus 136 ~aPyD~I~Vtaa---a~~vP~~L---l~QL~~gGrlv~Pv 169 (209)
T COG2518 136 EAPYDRIIVTAA---APEVPEAL---LDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCCEEEEEEC---CCCCCHHH---HHHCCCCCEEEEEE
T ss_conf 798478999503---57799899---98506598899998
No 85
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.03 E-value=3.4e-10 Score=85.85 Aligned_cols=118 Identities=23% Similarity=0.317 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 17999999852064467997798602335577777664138863278721332222111100000112222222222233
Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265)
Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265)
+...-+.+++....+.|+ .|||==||||.+..+... . +++++|+|+.+.|++-|+.++...+..+-.-+..+||.
T Consensus 182 ~P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~ 256 (347)
T COG1041 182 DPRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256 (347)
T ss_pred CHHHHHHHHHHHCCCCCC--EEECCCCCCCHHHHHHHH-C--CCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 989999987774164698--764576783488883664-2--75676032379998556641566276761688730221
Q ss_pred CCCCCCCCCCCCEE--EEEECC------CHH-HHHHHCCCCHHCCCCCEEEE
Q ss_conf 34575544674036--642013------213-44320121000485211776
Q gi|254780624|r 133 TLPFEANSFDACTL--AFGIRN------MPH-ITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 133 ~lp~~d~sfD~V~~--sf~l~~------~~d-~~~~l~e~~RvLKpGG~~~i 175 (265)
++||++++||+|.+ -||... +.+ ...+|+++.++||+||++++
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 2778877423588469987100245552899999999999987304848999
No 86
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.03 E-value=1.2e-09 Score=82.42 Aligned_cols=169 Identities=18% Similarity=0.303 Sum_probs=118.8
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CC--CCCCCC
Q ss_conf 679977986023355777776641388-63278721332222111100000112222222222233345-75--544674
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDN-RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FE--ANSFDA 143 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~--d~sfD~ 143 (265)
.+.+-+||||+||.|...+.+.+..++ ..+|..=|.|+.-++.+++-+++.++..-+.|.++||.+-. +. +-.=++
T Consensus 133 ~g~~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l 212 (311)
T pfam12147 133 SGRPVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTL 212 (311)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCE
T ss_conf 79956999851686162999998579887458851488877999999999749620006740576797676326999978
Q ss_pred CEEEEEE-CCCHH---HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCC--HHHHHHHHH
Q ss_conf 0366420-13213---44320121000485211776305544551011234565311133210254288--768657899
Q gi|254780624|r 144 CTLAFGI-RNMPH---ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGD--EEPYQYLIE 217 (265)
Q Consensus 144 V~~sf~l-~~~~d---~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~--~~~Y~yL~~ 217 (265)
++.| || .-|+| ....|+-+.+.+.|||.++- .++|-+|-+.. +++.+++. .++|-
T Consensus 213 ~IVS-GLyELF~dN~lv~~sl~Gl~~ai~~gGyLIY--TgQPWHPQLe~------------IAr~LtSHr~G~aWV---- 273 (311)
T pfam12147 213 AIVS-GLYELFPDNDLVRRSLAGLAQAVEPGGYLIY--TGQPWHPQLEM------------IARALTSHRGGEAWV---- 273 (311)
T ss_pred EEEE-CHHHHCCCHHHHHHHHHHHHHHCCCCCEEEE--CCCCCCHHHHH------------HHHHHHCCCCCCCCE----
T ss_conf 9970-1266368729999999999975089978998--29988667999------------999972566888676----
Q ss_pred HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 9996899899999999759953799985566499999981
Q gi|254780624|r 218 SIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265)
Q Consensus 218 Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265)
.+--++.|+-++.+.|||+++...-=-+||.|+-.|.|
T Consensus 274 --MRrRsQ~EmD~Lv~~aGf~K~~q~iD~~GIFTVSlA~r 311 (311)
T pfam12147 274 --MRRRSQAEMDELVEAAGFRKIAQRIDEWGIFTVSLARR 311 (311)
T ss_pred --EEECCHHHHHHHHHHCCCCHHHHEECCCCEEEEEEECC
T ss_conf --77367999999999819721555023677068986329
No 87
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=99.03 E-value=6.1e-10 Score=84.25 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=89.9
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
+..++||||.|.|.++..++..+. +|++.+.|..|...-++ .|. .+-++.+..-.+.+||+|+|--.
T Consensus 94 ~~~~LLDlGAGdG~VT~~la~~F~---~V~aTE~S~~Mr~rL~~----rgf------~vl~~~~~~~~~~~fDvIscLNv 160 (265)
T pfam05219 94 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY------NVLTEIEWQETDVNLDLILCLNL 160 (265)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC---EEEEEECCHHHHHHHHH----CCC------EEEEEHHCCCCCCCEEEEHHHHH
T ss_conf 766478835899789999997523---58887278999999997----598------68750120356874455422244
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHH--HHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 0132134432012100048521177630554455101123456--53111332102542887686578999996899899
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDM--WSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQD 227 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~--y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~e 227 (265)
|--..+|...|++|++.|+|+|++++. ...|-++....-... =..-.+|. .+ ..|+ +. ...
T Consensus 161 LDRc~~P~~LL~~i~~~L~P~G~lilA-vVlPf~pyVE~~~~~~~~p~e~l~~-----~g--~~~E---~~------v~~ 223 (265)
T pfam05219 161 LDRCFDPFKLLEDIHLALAPNGRVIVA-LVLPYMHYVETNTGSHLPPRPLLEN-----NG--ASFE---EE------VAR 223 (265)
T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEE-EEECCCCEEECCCCCCCCCHHHCCC-----CC--CCHH---HH------HHH
T ss_conf 531388699999999724999679999-9825620177589877995211378-----99--8099---99------999
Q ss_pred HHHHHHHCCCCEEEEEEC
Q ss_conf 999999759953799985
Q gi|254780624|r 228 FAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 228 l~~~l~~aGF~~v~~~~~ 245 (265)
+.+.++.+||+...+...
T Consensus 224 l~~vl~p~GF~v~~~tR~ 241 (265)
T pfam05219 224 FMEVFENAGFRVEAWTRL 241 (265)
T ss_pred HHHHHHCCCCEEEEEECC
T ss_conf 999876079578887326
No 88
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.01 E-value=1.5e-10 Score=88.07 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=83.2
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-C--CCCCCCCCCEEEE
Q ss_conf 779860233557777766413886327872133222211110000011222222222223334-5--7554467403664
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-P--FEANSFDACTLAF 148 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-p--~~d~sfD~V~~sf 148 (265)
-.+||||||.|.....+|...+ ...++|+|+...-+..+-.++.+.++ .||.++++||..+ + ++++|+|.|.+-
T Consensus 56 p~~lEIGfG~G~~l~~~A~~~P-~~~fIGiE~~~~gv~~~~~~~~~~~l-~Ni~i~~~da~~~l~~~~~~~s~~~i~i~- 132 (229)
T PRK00121 56 PIHLEIGFGRGEFLVEMAKANP-DINFIGIEIHEPGVAKALKKIEEAGL-KNLRLLCGDAVEVLEHFLPDGSLDRIYLN- 132 (229)
T ss_pred CEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEEHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHCCCCCCCEEEEC-
T ss_conf 4399961589699999998688-88689999616999999999998299-83898834789999971464541404671-
Q ss_pred EECCCHHH-------------HHHHCCCCHHCCCCCEEEEE
Q ss_conf 20132134-------------43201210004852117763
Q gi|254780624|r 149 GIRNMPHI-------------TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 149 ~l~~~~d~-------------~~~l~e~~RvLKpGG~~~i~ 176 (265)
+||| ...|..+.++|||||.+.+.
T Consensus 133 ----FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~~G~i~~~ 169 (229)
T PRK00121 133 ----FPDPWPKKRHHKRRLVQPEFLELYARVLKPGGEFHFA 169 (229)
T ss_pred ----CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf ----7999976320240128999999999857999889998
No 89
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=99.01 E-value=7.2e-10 Score=83.77 Aligned_cols=185 Identities=18% Similarity=0.231 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHC-CCHHHHHHHHHHHH----CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999987634211576-67614-80179999998520----6446799779860233557777766413886327872
Q gi|254780624|r 28 NMVNHVFSRVSHRYDVMN-DLMSL-GLHRFWKEAMVTNL----NPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVA 101 (265)
Q Consensus 28 ~~v~~~F~~iA~~YD~~N-~~~S~-G~~r~Wr~~~i~~l----~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~gi 101 (265)
+.-.+..+++.++-|-|- -+-.. ..|...-+.+++.+ .+..+...+.||.|+|-|.+|..++-..- -+|..+
T Consensus 7 ~~a~~YW~~v~atvdGmLGG~~~vs~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lL~~~f--~~VDlV 84 (217)
T pfam05891 7 SKAIAYWEGVSATVDGMLGGYGHVSDIDINGSRNFLRRLLRERLPGKRRHLVALDCGAGIGRVTKNLLLPLF--SKVDLV 84 (217)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEECHHHHHHHC--CEEEEE
T ss_conf 899898758999777521798877878898899999998644388877632665426763611266788754--813575
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf 133222211110000011222222222223334575544674036642013213--443201210004852117763055
Q gi|254780624|r 102 DINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 102 D~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
|+.+..++.|++.+.... ....++.+...++...+.+.||+|.|..++-|++| ..+.|+.+...|+|+|.+++=|=.
T Consensus 85 Epv~~Fl~~ak~~l~~~~-~~~~~~~~~gLQdf~P~~~~YD~IW~QW~~ghLtD~dlv~Fl~RCk~~L~~~G~IvvKEN~ 163 (217)
T pfam05891 85 EPVEDFLAKAKEYLAEEK-KKVGNFFCVGLQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKSGLKPNGIIVIKENV 163 (217)
T ss_pred CCCHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 444999999999874037-9765389736101689998176998058452188899999999999847898649984223
Q ss_pred CCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 4455101123456531113321025428876865789999968998999999997599537999
Q gi|254780624|r 180 EVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 180 ~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265)
..+. ..++ .+ -.|+.+ +.+.+..++++||++.++.+
T Consensus 164 ~~~~----~~~D-----------------~~-----DsSvTR--s~~~~~~lF~~AGl~~v~~~ 199 (217)
T pfam05891 164 TQEG----VIFD-----------------DV-----DSSVTR--GEASFRKIFKKAGLKLVAEE 199 (217)
T ss_pred CCCC----CEEC-----------------CC-----CCCCCC--CHHHHHHHHHHCCCEEEEHH
T ss_conf 6777----7415-----------------65-----454317--79999999998598566043
No 90
>KOG3178 consensus
Probab=98.99 E-value=5e-09 Score=78.32 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=109.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC
Q ss_conf 57667614801799999985206446799779860233557777766413886327872133222211110000011222
Q gi|254780624|r 43 VMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD 122 (265)
Q Consensus 43 ~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~ 122 (265)
.+|..+++ ..+.|.+++++...-.. .-...+|+|.|+|.++..+..+++ +|-++++-..-+-.++.-.+ +
T Consensus 152 ~~~~sm~~-l~~~~~~~il~~~~Gf~-~v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-----~ 221 (342)
T KOG3178 152 DFNGSMSF-LSTLVMKKILEVYTGFK-GVNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-----P 221 (342)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHCCCC-CCCEEEECCCCHHHHHHHHHHHCC---CCCEEECCHHHHHHHHHHHC-----C
T ss_conf 99999888-87888886420102655-676688758747699999997588---77255147899985223206-----7
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHH-------HHHH
Q ss_conf 22222222333-4575544674036642013213--443201210004852117763055445510112-------3456
Q gi|254780624|r 123 CITFIEANAET-LPFEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKK-------IYDM 192 (265)
Q Consensus 123 ~i~~~~~da~~-lp~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~-------~~~~ 192 (265)
.|+.+-||... +|-. |+|.+...|||++| ..+.|++++.-|+|||.+++.|.-.|+...... ..+.
T Consensus 222 gV~~v~gdmfq~~P~~----daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~ 297 (342)
T KOG3178 222 GVEHVAGDMFQDTPKG----DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDL 297 (342)
T ss_pred CCCEECCCCCCCCCCC----CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEHHHH
T ss_conf 8651236453458876----759987000568768899999999985899888999835688777766643210104678
Q ss_pred HHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 5311133210254288768657899999689989999999975995379998
Q gi|254780624|r 193 WSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTN 244 (265)
Q Consensus 193 y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~ 244 (265)
+... +..+.++ .+.+|+..++.++||..+.+.-
T Consensus 298 lm~~-------~~~~Gke------------rt~~e~q~l~~~~gF~~~~~~~ 330 (342)
T KOG3178 298 LMLT-------QTSGGKE------------RTLKEFQALLPEEGFPVCMVAL 330 (342)
T ss_pred HHHH-------HHCCCEE------------CCHHHHHHCCHHHCCCEEEEEE
T ss_conf 9998-------7525601------------1499997114664683468973
No 91
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.99 E-value=3.4e-10 Score=85.87 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=88.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCC-CCCCC-CC-CCCCCCCCCEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222-22333-45-75544674036
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIE-ANAET-LP-FEANSFDACTL 146 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~-~da~~-lp-~~d~sfD~V~~ 146 (265)
+..+||++|+++|..+.+++...+.+++++.+|+.++|.+.|++.+++.+..+.|..+. +|+.+ +. +.+++||+|++
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCEEEE
T ss_conf 98649996352379999999638889769997079899999999999759765289883574799997334788568998
Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 6420132134432012100048521177630
Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
-= .=.+.+..+..+.+.|+|||.+++-.
T Consensus 139 Da---dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 DA---DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EC---CHHHCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 37---84359999999999737896899830
No 92
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=6.3e-10 Score=84.13 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=83.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+-+++.+....+. +|||+|||.|.+...+++..+ ..+++.+|++...|+.||+.+...+.. +.....+|. ..+.+
T Consensus 148 ~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~-~~~v~ 222 (300)
T COG2813 148 RLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNL-YEPVE 222 (300)
T ss_pred HHHHHHCCCCCCC--CEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCC-CCEEEEECC-CCCCC
T ss_conf 9999737755699--688707884299999998689-872899826699999988769973987-637998124-46654
Q ss_pred CCCCCCCEEEEEECC---CH-H-HHHHHCCCCHHCCCCCEEEEE
Q ss_conf 544674036642013---21-3-443201210004852117763
Q gi|254780624|r 138 ANSFDACTLAFGIRN---MP-H-ITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~sf~l~~---~~-d-~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+ +||.|.|-==+|. +. + -++.+.++.+.|++||.+.|+
T Consensus 223 ~-kfd~IisNPPfh~G~~v~~~~~~~ii~~A~~~L~~gGeL~iV 265 (300)
T COG2813 223 G-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred C-CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 4-006898488846771016788999999999760459779999
No 93
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.96 E-value=7.2e-10 Score=83.76 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=81.2
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--C-CCCCCCCCCEEEEE
Q ss_conf 79860233557777766413886327872133222211110000011222222222223334--5-75544674036642
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--P-FEANSFDACTLAFG 149 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--p-~~d~sfD~V~~sf~ 149 (265)
.+||||||.|.....+|+..+ ...++||++...-+..|.+++.+.++. |+..+++||..+ - ++++|.|.|.+-
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~-- 126 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYIN-- 126 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCC-CCCEEEEEEEHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHCCCCCCEEEEEEE--
T ss_conf 699968889878999998789-877899997348999999999982998-4699807799999735898856579997--
Q ss_pred ECCCHHH-------------HHHHCCCCHHCCCCCEEEE
Q ss_conf 0132134-------------4320121000485211776
Q gi|254780624|r 150 IRNMPHI-------------TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 150 l~~~~d~-------------~~~l~e~~RvLKpGG~~~i 175 (265)
+||| ...++++.|+|||||.+.+
T Consensus 127 ---FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 127 ---FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred ---CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf ---999998766433214788999999997268978999
No 94
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=98.94 E-value=7.7e-10 Score=83.58 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=86.6
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333457
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF 136 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~ 136 (265)
|+++.+.+. ++.+|||+-||.|-++..+++.. ...+|+++|+++..++.+++++...+....|+.+++|+.++.
T Consensus 91 r~ri~~~~~----~ge~VlD~faGvG~f~l~~ak~~-~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~- 164 (199)
T pfam02475 91 RERIAKLVK----EGEVVVDMFAGIGPFSIPIAKHS-KAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVI- 164 (199)
T ss_pred HHHHHHHCC----CCCEEEECCCCCCHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHC-
T ss_conf 999997448----99889981688657789986407-864899982899999999999998099983699928787860-
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 55446740366420132134432012100048521177
Q gi|254780624|r 137 EANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 137 ~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
+...||.|.+.. ...-...|.++.++||+||.+.
T Consensus 165 ~~~~~Drvimnl----P~~a~~fL~~A~~~lk~gg~iH 198 (199)
T pfam02475 165 LEGVADRVIMNL----PKSAHEFLDKALRAVKDGGVIH 198 (199)
T ss_pred CCCCCCEEEECC----CCCHHHHHHHHHHHHCCCCEEE
T ss_conf 467400999489----7316999999999855898983
No 95
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.93 E-value=1e-09 Score=82.72 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=85.4
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 97798602335577777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
+.++||+|||.|..++.|+... -.|+++|+++.-|+..++-+.++++ +|+....|.....+++ .||.|+++-++
T Consensus 123 pgkaLDLGCG~GRNsLyLa~~G---fdVTA~D~N~~sl~~L~~ia~~E~L--~i~~~~yDIN~a~l~~-~YDfI~STVV~ 196 (289)
T PRK12335 123 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQASLENLQQIAEKENL--NIRAGSYDINSASLQE-EYDFILSTVVL 196 (289)
T ss_pred CCCEEEECCCCCCCHHHHHHCC---CCEEEEECCHHHHHHHHHHHHHCCC--CCCCEEECCCCCCCCC-CCCEEEEEEEE
T ss_conf 8746660478882278897579---8425886899999999999997198--8772575166666677-76789996788
Q ss_pred CCC--HHHHHHHCCCCHHCCCCCEEEEEE-CCCCCCC
Q ss_conf 132--134432012100048521177630-5544551
Q gi|254780624|r 151 RNM--PHITLVLQEIYRILKCGGRLLVLE-FSEVQGP 184 (265)
Q Consensus 151 ~~~--~d~~~~l~e~~RvLKpGG~~~i~d-f~~p~~~ 184 (265)
..+ ...+..+.+|-....|||.=+|+- +++++.+
T Consensus 197 mFL~~~~ip~iI~nMQ~~T~~gGyNlIV~am~T~d~p 233 (289)
T PRK12335 197 MFLNPERIPDIIKNMQEHTNPGGYNLIVCAMDTEDYP 233 (289)
T ss_pred EEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 6428778699999999844799868999871477788
No 96
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=98.89 E-value=3e-09 Score=79.73 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHCCCCCCC--CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 801799999985206446799--779860233557777766413886327872133222211110000011222222222
Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRKSKD--YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIE 128 (265)
Q Consensus 51 G~~r~Wr~~~i~~l~~~~~~~--~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~ 128 (265)
|.|.. -.-+++.+....-++ .+++|+|||.|-+++.+....- .+++|+|+-|--++.||.+....+....+....
T Consensus 176 GtH~T-T~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa--~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~ 252 (330)
T TIGR00406 176 GTHPT-TSLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 252 (330)
T ss_pred CCCHH-HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 97457-899999874014777665478712671789999997512--311221377289999997687458864576432
Q ss_pred CCC--CCCCCCCCCCCCCEEEEEECCCHH-HHHHHCCCCHHCCCCCEEEE
Q ss_conf 223--334575544674036642013213-44320121000485211776
Q gi|254780624|r 129 ANA--ETLPFEANSFDACTLAFGIRNMPH-ITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 129 ~da--~~lp~~d~sfD~V~~sf~l~~~~d-~~~~l~e~~RvLKpGG~~~i 175 (265)
... +...-.+..+|+|++-- +.+ ......++.|++||+|.+++
T Consensus 253 ~~~vPe~~~~~e~~~DViVANi----LA~vi~~L~p~~~~L~~~~G~lil 298 (330)
T TIGR00406 253 ENSVPELEQPIEGKADVIVANI----LAEVIKELYPQFSRLVKPGGHLIL 298 (330)
T ss_pred CCCCCCCCCCCCCCCCEEEECC----HHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 0578753453225667578800----245787641355131068996574
No 97
>KOG1499 consensus
Probab=98.85 E-value=2.3e-09 Score=80.55 Aligned_cols=102 Identities=25% Similarity=0.309 Sum_probs=76.4
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE---
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036---
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL--- 146 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~--- 146 (265)
++..|||+|||||.++...|+... .+|+++|.|+-+ +.|++-+...+....|++++|.+|++.+|-+..|+|.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499 60 KDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCC--CEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEEHHH
T ss_conf 797899757881288999887375--339999626899-99999998568660599950305787647554029963012
Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 6420132134432012100048521177
Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
+|+|-+=.=.+.+|-.=-+.|+|||.+.
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEC
T ss_conf 4787776566645533330047795576
No 98
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=3.3e-09 Score=79.53 Aligned_cols=112 Identities=29% Similarity=0.424 Sum_probs=83.0
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--C
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345--7
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--F 136 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~ 136 (265)
.++..+.+.++ .+|||+|||.|-=+..+++.. +.++|+++|+++.=++..++++.+.++. +....+|+...+ .
T Consensus 236 l~~~ll~p~~g--~~VLD~CAaPGGKt~~la~~~-~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~--~~v~~~d~~~~~~~~ 310 (428)
T PRK10901 236 GCVTLLAPQNG--EHILDLCAAPGGKTTHILEVA-PEAQVLAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWC 310 (428)
T ss_pred HHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHC
T ss_conf 89986498889--879871688766899999964-5892899969888999999999975997--399977655723313
Q ss_pred CCCCCCCCEE-----EEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEE
Q ss_conf 5544674036-----642-0132134----------------4320121000485211776
Q gi|254780624|r 137 EANSFDACTL-----AFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 137 ~d~sfD~V~~-----sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i 175 (265)
++.+||.|.+ +.| +|.=||. .+.|..+.+.|||||+++-
T Consensus 311 ~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvY 371 (428)
T PRK10901 311 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVY 371 (428)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 4456787997589888724446854211289999999999999999999986688988999
No 99
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=98.85 E-value=1.8e-09 Score=81.13 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=81.8
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECC--------CCCCCCCCCCCHHCCCCC-CCCCCCCCCCCCCC---CCCC
Q ss_conf 77986023355777776641388632787213--------322221111000001122-22222222233345---7554
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADI--------NNEMLSVGRDRAFKENLQ-DCITFIEANAETLP---FEAN 139 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~--------s~~Ml~~a~~r~~~~~~~-~~i~~~~~da~~lp---~~d~ 139 (265)
..+||||||.|.....+|+..| ....+||++ -+..+..|-+++.+.++. .|++++++||..++ ++++
T Consensus 21 p~~~EIGcG~G~fl~~~A~~nP-~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~~~~~~~ 99 (216)
T TIGR00091 21 PLVLEIGCGKGRFLIKMAKQNP-DKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLEKFFPDG 99 (216)
T ss_pred CEEEEECCCCCCCHHHHHHHCC-CCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 4489841687602689977279-972777899988741022728998875576617844213522136023204540078
Q ss_pred --CCCCCEEEEEECCCHHH-------------HHHHCCCCHHCCCCCEEEE
Q ss_conf --46740366420132134-------------4320121000485211776
Q gi|254780624|r 140 --SFDACTLAFGIRNMPHI-------------TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 140 --sfD~V~~sf~l~~~~d~-------------~~~l~e~~RvLKpGG~~~i 175 (265)
+..-|.+ +|||| +..|+++.++|+|||.+.+
T Consensus 100 PP~l~k~f~-----~FPDPW~KkRH~KRR~~~~~Fl~~~~~~L~~~G~i~~ 145 (216)
T TIGR00091 100 PPSLSKVFL-----NFPDPWPKKRHNKRRITQPHFLKEVANVLKKGGVIEL 145 (216)
T ss_pred CCCEEEEEE-----ECCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 980456888-----7788951021022342567899999997045968999
No 100
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=98.78 E-value=2.6e-08 Score=73.68 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=76.6
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 97798602335577777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
+.++||+|+|+|..+....+..+..-+++++|.|+.|++.++.-+........+. ...+.......-..+|+|+++|.|
T Consensus 35 P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~DLVi~sy~L 113 (275)
T pfam09243 35 PLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGAALDFEPADLVTISYVL 113 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCCCCCCCCCCEEEEECHH
T ss_conf 8757772775799999999884247689997489999999999985184345431-114310112458987889961422
Q ss_pred CCCH--HHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 1321--34432012100048521177630554455
Q gi|254780624|r 151 RNMP--HITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 151 ~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
-.++ ++...++++.+.+ +|.++|+|-++|..
T Consensus 114 ~El~~~~R~~~v~~LW~~~--~g~LVlVEpGtp~G 146 (275)
T pfam09243 114 DELTPASREKVIDNLWAKA--AQALVIVEPGTPAG 146 (275)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCEEEEEECCCHHH
T ss_conf 0799789999999999953--99799991898179
No 101
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=98.76 E-value=3.6e-09 Score=79.23 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=85.6
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345755
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265)
.+++.+.| -|+||+|||-|..|+.|+-.. -.|.+.|-|+..++.-.+-..++++ +|++...-|..++.+ +
T Consensus 67 eAvk~v~P-----cKtLDLGCGqGrNsLyLsl~G---YDV~awD~n~~siA~v~~~k~~EnL-~nl~t~~yDiNaa~~-~ 136 (239)
T TIGR00477 67 EAVKVVKP-----CKTLDLGCGQGRNSLYLSLAG---YDVDAWDHNEASIASVEEIKEKENL-DNLRTDVYDINAAAL-D 136 (239)
T ss_pred HHHHCCCC-----CCEEECCCCCCHHHHHHHHHC---CCCEEECCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHC-C
T ss_conf 55502379-----865326888853789997616---8410121686688759988876267-110046554335540-1
Q ss_pred CCCCCCEEEEEE--CCCHHHHHHHCCCCHHCCCCCEEEEEE-CCCCCCCH
Q ss_conf 446740366420--132134432012100048521177630-55445510
Q gi|254780624|r 139 NSFDACTLAFGI--RNMPHITLVLQEIYRILKCGGRLLVLE-FSEVQGPV 185 (265)
Q Consensus 139 ~sfD~V~~sf~l--~~~~d~~~~l~e~~RvLKpGG~~~i~d-f~~p~~~~ 185 (265)
+.||.|+++=+| -+-...+..+++|.++-||||.=+|+- +++-+-|.
T Consensus 137 e~YDFI~sTVVf~FL~a~rvP~iIanMq~hT~pGGYNLIVaAMdTaDyPC 186 (239)
T TIGR00477 137 EDYDFILSTVVFMFLEAERVPEIIANMQEHTKPGGYNLIVAAMDTADYPC 186 (239)
T ss_pred CCCCEEEEEHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 27874210201221058877267886587467987322233215788888
No 102
>KOG2904 consensus
Probab=98.72 E-value=2.7e-08 Score=73.66 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=77.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCC
Q ss_conf 9977986023355777776641388632787213322221111000001122222222222333-----45755446740
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-----LPFEANSFDAC 144 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-----lp~~d~sfD~V 144 (265)
++..|||+|||+|.++..++...+ ++.++++|.|+..+..|.+++++..+..+|..++-+.+. .|..+...|++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 666688705783188999983478-7348998532889999998899874158468984122201256554545752488
Q ss_pred EEE--EE-----------ECCCHH-------------HHHHHCCCCHHCCCCCEEEE
Q ss_conf 366--42-----------013213-------------44320121000485211776
Q gi|254780624|r 145 TLA--FG-----------IRNMPH-------------ITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 145 ~~s--f~-----------l~~~~d-------------~~~~l~e~~RvLKpGG~~~i 175 (265)
++. |. ++-.++ ......-+-|.|+|||.+.+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ECCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 538996555512232713302374454306663269999998766754566885889
No 103
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=98.72 E-value=5.3e-09 Score=78.15 Aligned_cols=73 Identities=27% Similarity=0.321 Sum_probs=63.6
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEE
Q ss_conf 77986023355777776641388632787213322221111000001122222222222333----45755446740366
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET----LPFEANSFDACTLA 147 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~----lp~~d~sfD~V~~s 147 (265)
..|||+.||+|-.++.+|+.. .+|+|+|+++.+|+.|+.+++-.|..++|+|++||..+ +..+...||+|+++
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~---~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~s 78 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVF---CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLS 78 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 799993778079999999758---98999979899999999989983987317999775999978876358875589977
No 104
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.72 E-value=1.8e-08 Score=74.78 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=73.4
Q ss_pred HCCCH----HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 14801----79999998520644679977986023355777776641388632-78721332222111100000112222
Q gi|254780624|r 49 SLGLH----RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQDC 123 (265)
Q Consensus 49 S~G~~----r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~~ 123 (265)
||||| ..-.+++++.+++..++ +||+||+|+|.+|..|+++.. + |+++++-+.|.+..+++... ....+
T Consensus 6 ~lGQnFL~D~~~~~~Iv~~~~~~~~~--~vlEIGPG~G~LT~~Ll~~~~---~~v~aiEiD~~l~~~L~~~~~~-~~~~~ 79 (277)
T TIGR00755 6 SLGQNFLIDESVIQKIVEAANVLEND--VVLEIGPGLGALTEPLLKRAK---KLVTAIEIDPRLAEILRKLLSE-KLYEN 79 (277)
T ss_pred CCCCCEEECHHHHHHHHHHHCCCCCC--EEEEECCCCHHHHHHHHHHCC---CEEEEEEECHHHHHHHHHHCCC-CCCCC
T ss_conf 22760240878999999974378997--799973882078999998259---8489997267899998752154-33242
Q ss_pred CCCCCCCCCCCCCC-CCCCC
Q ss_conf 22222223334575-54467
Q gi|254780624|r 124 ITFIEANAETLPFE-ANSFD 142 (265)
Q Consensus 124 i~~~~~da~~lp~~-d~sfD 142 (265)
+..+.+||...+++ +.+|+
T Consensus 80 ~~~i~~Dalk~~~~~~~~~~ 99 (277)
T TIGR00755 80 LEVIEGDALKVDLNSLEDFP 99 (277)
T ss_pred EEEEECCEEEECCCHHHHCC
T ss_conf 57871444541232043316
No 105
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=98.72 E-value=3.8e-08 Score=72.68 Aligned_cols=119 Identities=26% Similarity=0.365 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHCCCC----CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 801799999985206446----7997798602335577777664138863278721332222111100000112222222
Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRK----SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265)
Q Consensus 51 G~~r~Wr~~~i~~l~~~~----~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265)
..+..|.+++++.+.+.+ .++.+|+|+|+|.|.-...++=.. |..+++.+|.+..=+..-++-..+.++ +||+.
T Consensus 46 ~~~~~~~rHi~DSl~~~~~~~~~~~~~vlDiGSGaGfPGiplAI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v 123 (216)
T PRK00107 46 DPEEMWVRHILDSLALLPYLQGEKPIRVLDVGSGAGFPGIPLAIAR-PDLQVTLVDSLGKKIAFLRQVAAELGL-KNVTV 123 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHC-CCCCEEEECHHHHHHHHHHHHHHHCCC-CCEEE
T ss_conf 9899999988857889873376658779970799994267899977-877299973876999999999997699-98799
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 22223334575544674036642013213443201210004852117763
Q gi|254780624|r 127 IEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 127 ~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+++.+|+++- +.+||+|++ |-|.+....+.-....|++||+++++
T Consensus 124 ~~~R~E~~~~-~~~fD~its----RAva~l~~l~~~~~~~l~~~g~~i~~ 168 (216)
T PRK00107 124 VHGRAEEFGQ-EEKFDVVTS----RAVASLSDLVELCLPLLKPGGRFLAL 168 (216)
T ss_pred EEHHHHCCCC-CCCCCEEEE----EHHHCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8635440465-678668986----05406999999999754889799998
No 106
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=98.70 E-value=1.7e-08 Score=74.89 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=84.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC-----CCCCCCCCCCCCCCC
Q ss_conf 999852064467997798602335577777664138863278721332222111100000-----112222222222233
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK-----ENLQDCITFIEANAE 132 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~-----~~~~~~i~~~~~da~ 132 (265)
-++.+.|........++||||||.|..|.-+|..++.++-|++|+=-++....|++++++ .++ +||..+.||..
T Consensus 70 A~m~~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~-~NV~v~~GDG~ 148 (228)
T TIGR00080 70 AKMTEYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGL-DNVIVIEGDGR 148 (228)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 99999888521403556650478558999999987139718998535788999998765431444068-86589977886
Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 3457554467403664201321344320121000485211776
Q gi|254780624|r 133 TLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 133 ~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
.=--+-.-||.|..+=+=.++ +++ +.+=|+.||++++
T Consensus 149 ~G~~~~APYd~I~~~AA~k~i---P~A---L~~QL~eGG~L~~ 185 (228)
T TIGR00080 149 QGWEEKAPYDAILVTAAAKEI---PKA---LIDQLEEGGILVL 185 (228)
T ss_pred CCHHHCCCCCEEEEECCCCCC---CHH---HHHHHHHCCEEEE
T ss_conf 571024883527752378987---657---8999972898862
No 107
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.69 E-value=2.7e-07 Score=67.22 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=105.5
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCCCC--CCCCC
Q ss_conf 679977986023355777776641388632787213322221111000001122222222222333-457554--46740
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFEAN--SFDAC 144 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~d~--sfD~V 144 (265)
.+++..++|+|||.+.=+..|.+........+.+|+|.++|..+.+++.+.-..-.|.-+++|.++ +.++.. .-..+
T Consensus 61 ~~~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~~p~l~v~~v~~dy~~~l~~~~~~~~~~rl 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECHHCHHHCCCCCCCCCCE
T ss_conf 27676477317886237899999862156388775689999999999997789976899963331574456655788758
Q ss_pred EEEE--EECCCHHH--HHHHCCCCHHCCCCCEEEE-EECCCCCCCHHHHHHH-------HHHHCHHHHHHHHHCCCH--H
Q ss_conf 3664--20132134--4320121000485211776-3055445510112345-------653111332102542887--6
Q gi|254780624|r 145 TLAF--GIRNMPHI--TLVLQEIYRILKCGGRLLV-LEFSEVQGPVFKKIYD-------MWSFKVIPQLGRFIAGDE--E 210 (265)
Q Consensus 145 ~~sf--~l~~~~d~--~~~l~e~~RvLKpGG~~~i-~df~~p~~~~~~~~~~-------~y~~~iiP~~g~~~~~~~--~ 210 (265)
.... .+-|++.. .+.|+++.+.|.||+.++| +|..+... .+...|+ .+..+++..+-+.+.++- +
T Consensus 141 ~~flGSsIGNf~~~ea~~fL~~~~~~l~~~d~lLiG~Dl~Kd~~-~l~~AYnD~~GvTa~FnlN~L~~iNr~Lg~dF~~~ 219 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPA-VLEAAYNDAAGVTAAFNLNLLRRLNRELGGDFDPD 219 (301)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99707544789989999999999997199984899404456989-99987329644247899979999999847785765
Q ss_pred HHHHHH---------------------------------HHHH----HCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 865789---------------------------------9999----689989999999975995379998
Q gi|254780624|r 211 PYQYLI---------------------------------ESIR----RFPNQQDFAAVISAAGFSNVSFTN 244 (265)
Q Consensus 211 ~Y~yL~---------------------------------~Si~----~f~~~~el~~~l~~aGF~~v~~~~ 244 (265)
.|++.. |.|. .=++.+++..+++++||+.+++..
T Consensus 220 ~f~h~a~yn~~~~riem~L~s~~~q~V~i~~~~~~f~~GE~I~tE~S~Ky~~~~~~~l~~~aG~~~~~~W~ 290 (301)
T TIGR03438 220 AFRHRAFYNEERSRIEMHLVSRRDQTVRLAGLTVRFAAGETIHTENSYKFSLERFAALAAAAGLRPEQVWT 290 (301)
T ss_pred HCEEEEEECCCCCEEEEEEEECCCEEEEECCEEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 56799998687787999998168559998997888449898999974087999999999987994468898
No 108
>KOG2899 consensus
Probab=98.68 E-value=3.1e-08 Score=73.20 Aligned_cols=158 Identities=22% Similarity=0.261 Sum_probs=95.7
Q ss_pred HHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC----------------------
Q ss_conf 2064467997798602335577777664138863278721332222111100000112----------------------
Q gi|254780624|r 63 NLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL---------------------- 120 (265)
Q Consensus 63 ~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~---------------------- 120 (265)
.+....-++..+|||||-.|.++..+++.+.+. .|.|+||-+..+..|++.+.....
T Consensus 51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~ 129 (288)
T KOG2899 51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ 129 (288)
T ss_pred HCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 135422476205750677546589999860643-3467615689999999735660101033457875433544454101
Q ss_pred ------------CCCCCCCCCC-----CCCCCCCCCCCCCCEEEEEEC-----CCHH--HHHHHCCCCHHCCCCCEEEEE
Q ss_conf ------------2222222222-----333457554467403664201-----3213--443201210004852117763
Q gi|254780624|r 121 ------------QDCITFIEAN-----AETLPFEANSFDACTLAFGIR-----NMPH--ITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 121 ------------~~~i~~~~~d-----a~~lp~~d~sfD~V~~sf~l~-----~~~d--~~~~l~e~~RvLKpGG~~~i~ 176 (265)
..++.|...+ .+=|.+....||+|.| +.+- |..| ..+.++.+++.|.|||.+++
T Consensus 130 ~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlc-LSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv- 207 (288)
T KOG2899 130 RNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILC-LSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV- 207 (288)
T ss_pred CCCCCCCCCCCCCCCHHCCCCCEEEECCHHHHHCCCCCCEEEE-EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-
T ss_conf 2446651003677201013233798600455505654227999-77334676456457899999999986086857997-
Q ss_pred ECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCCEEEEE
Q ss_conf 05544551011234565311133210254288768657899999689989999999975--99537999
Q gi|254780624|r 177 EFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAA--GFSNVSFT 243 (265)
Q Consensus 177 df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~a--GF~~v~~~ 243 (265)
| |+. |+.|.+.- +....-...|. .-+..++.+..++.+. ||+.++--
T Consensus 208 E---PQp------WksY~kaa-----r~~e~~~~ny~------~i~lkp~~f~~~l~q~~vgle~~e~~ 256 (288)
T KOG2899 208 E---PQP------WKSYKKAA-----RRSEKLAANYF------KIFLKPEDFEDWLNQIVVGLESVEDL 256 (288)
T ss_pred C---CCC------HHHHHHHH-----HHHHHHHCCCC------CEECCHHHHHHHHHHHHHHEEEECCC
T ss_conf 5---886------17799999-----99998605840------10328889876542023323210010
No 109
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.67 E-value=2e-08 Score=74.47 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=83.3
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 6446799779860233557777766413886327872133222211110000011222222222223334-575544674
Q gi|254780624|r 65 NPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-PFEANSFDA 143 (265)
Q Consensus 65 ~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-p~~d~sfD~ 143 (265)
.++++ .+|||+|+..|-=|..++....+.+.|++.|+++.=++.-++++.+.|. .|+...+.|+..+ ..-.++||.
T Consensus 110 ~p~pg--e~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~-~n~~vt~~d~~~~~~~~~~~FD~ 186 (471)
T PRK11933 110 DDNAP--QRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPEMFDA 186 (471)
T ss_pred CCCCC--CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHCCCCCCE
T ss_conf 88999--9899957785489999999758996699983889999999999997199-84799935866740323010667
Q ss_pred CEE-----EEE-ECCCHH---------------H-HHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 036-----642-013213---------------4-4320121000485211776305544
Q gi|254780624|r 144 CTL-----AFG-IRNMPH---------------I-TLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 144 V~~-----sf~-l~~~~d---------------~-~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
|.+ +.| +|.-++ + .+.|.++.+.|||||+++ +|+.
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LV---YSTC 243 (471)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV---YSTC 243 (471)
T ss_pred EEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EECC
T ss_conf 99878888873355597576418987999999999999999998738896899---9817
No 110
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=98.63 E-value=5.2e-08 Score=71.78 Aligned_cols=110 Identities=27% Similarity=0.393 Sum_probs=77.8
Q ss_pred HHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52064467997798602335577777664138863278721332222111100000112222222222233345755446
Q gi|254780624|r 62 TNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSF 141 (265)
Q Consensus 62 ~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sf 141 (265)
+.|....++ .-||+||.|||.+|.++++++. ..|+++|+||-.+..+|+++.=.+ .++.++.+|.-+ +...+.|
T Consensus 14 ~nL~~~k~d-deVlEiG~GtGlvair~~~Kg~--k~i~~tDinP~Avk~~~~NA~~N~--~~l~v~~~Dlf~-~v~geKF 87 (183)
T TIGR00537 14 ANLRELKPD-DEVLEIGAGTGLVAIRLKEKGK--KKILTTDINPFAVKLLRENAKLNN--VELDVLETDLFE-GVRGEKF 87 (183)
T ss_pred HHHHHHCCC-CEEEEEECCHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHHCCHHCC--CCEEEEECCCCC-CCCCCCE
T ss_conf 986751699-5289971680489999851588--207886368799998773100026--640476111357-8555510
Q ss_pred CCCEEE--EE-----EC-----CC---------HHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 740366--42-----01-----32---------134432012100048521177630
Q gi|254780624|r 142 DACTLA--FG-----IR-----NM---------PHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 142 D~V~~s--f~-----l~-----~~---------~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
|+|.-- |. .+ ++ .=.++.|.|+=.+||+||++.++.
T Consensus 88 dviLFNpPYlp~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp~~lk~gGrv~l~~ 144 (183)
T TIGR00537 88 DVILFNPPYLPLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELPEYLKEGGRVQLIQ 144 (183)
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 277307898888765234766443331787305788888765688870599899996
No 111
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=98.63 E-value=1.8e-08 Score=74.78 Aligned_cols=93 Identities=18% Similarity=0.359 Sum_probs=63.5
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 779860233557777766413886327872-----133222211110000011222222222223334575544674036
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVA-----DINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL 146 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~gi-----D~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~ 146 (265)
..+||+|||.+.+.-.|..+ .|+.+ |-.++++..|-+| |...-+- +.+ -..||||+++||.|.|
T Consensus 119 Rt~LDvGCGVASfGayLl~r-----~vltMS~AP~D~HeaQVQfALER----GiPA~ig-vlg-T~rLPyPs~sFDm~HC 187 (506)
T pfam03141 119 RTALDVGCGVASFGAYLLSR-----DVLTMSFAPKDVHEAQVQFALER----GVPAMLG-VLG-TRRLPYPSRSFDMAHC 187 (506)
T ss_pred EEEEECCCCEECHHHHHHCC-----CCEEEEECCCCCHHHHHHHHHHC----CCHHHHH-HHH-CCCCCCCCCCCCHHHH
T ss_conf 89997688721037776327-----84588734764118889999971----8525665-640-3535887533012442
Q ss_pred EEEECCC-HHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 6420132-1344320121000485211776
Q gi|254780624|r 147 AFGIRNM-PHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 147 sf~l~~~-~d~~~~l~e~~RvLKpGG~~~i 175 (265)
|=++=.+ .+=-..|-|+-|+|+|||.++.
T Consensus 188 sRC~IpW~~~dG~~LlEvdRvLRPGGYfV~ 217 (506)
T pfam03141 188 SRCLIPWHANDGILLLEVDRVLRPGGYFVL 217 (506)
T ss_pred CCCCCCCCCCCCEEEEEEEHCCCCCCEEEE
T ss_conf 245674104797788654000047866994
No 112
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.62 E-value=9e-08 Score=70.25 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=76.0
Q ss_pred CCCCEEEECCHHHHH----HHHHHHHHCC----CCCEEEEECCCCCCCCCCCCCH-------------------------
Q ss_conf 799779860233557----7777664138----8632787213322221111000-------------------------
Q gi|254780624|r 69 SKDYRVLDVAGGTGD----VAFRIAEASD----NRSQIVVADINNEMLSVGRDRA------------------------- 115 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~----~~~~l~~~~~----~~~~v~giD~s~~Ml~~a~~r~------------------------- 115 (265)
+...+|.-+||.||. ++..+.+..+ ...+|+|.|+|+.+|+.|++=.
T Consensus 98 ~~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~~~~~~~kyF~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCEE
T ss_conf 99748997778888208999999999743348985699998399999999986898989984699999998806569889
Q ss_pred -HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEE
Q ss_conf -00112222222222233345755446740366420132--1344320121000485211776
Q gi|254780624|r 116 -FKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 116 -~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i 175 (265)
.+..+...|.|.+.|..+-..+.+.||+|+|--.|=.+ +...++++.+++.|+|||.+++
T Consensus 178 ~v~~~lr~~v~F~~~NL~~~~~~~~~fDlI~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 240 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EECHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 998899850918327899998777884199976323545999999999999998389939998
No 113
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.62 E-value=1.9e-07 Score=68.12 Aligned_cols=170 Identities=20% Similarity=0.206 Sum_probs=100.4
Q ss_pred HHHHHHCCCCC-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 99852064467-9977986023355777776641388632787213322221111000001122222-222222333457
Q gi|254780624|r 59 AMVTNLNPRKS-KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI-TFIEANAETLPF 136 (265)
Q Consensus 59 ~~i~~l~~~~~-~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i-~~~~~da~~lp~ 136 (265)
.+++.|....+ .+.+||+||||||.-+..+++.++. ..-.--|+.+..+..-+..+...++. |+ .-+.-|+...+.
T Consensus 13 pIl~vL~~~l~~~~~~VLEIaSGTGQHav~fA~~lP~-l~WqPSD~~~~~~~sI~aw~~~~~l~-Nl~~P~~LDv~~~~w 90 (201)
T pfam06080 13 PILSVLQSYFAKTTERVLEIASGTGQHAVFFAPLLPN-LTWQPSDPDPNLRGSIAAWADQQGLR-NLRPPLHLDVTRPPW 90 (201)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEECCCCCC
T ss_conf 9999999982747885799768726999999987899-88515888877899999998743777-668873763278998
Q ss_pred -----CCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHH---HHHHHHHHHCHHHHHHHHHC
Q ss_conf -----55446740366420132--134432012100048521177630554455101---12345653111332102542
Q gi|254780624|r 137 -----EANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVF---KKIYDMWSFKVIPQLGRFIA 206 (265)
Q Consensus 137 -----~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~---~~~~~~y~~~iiP~~g~~~~ 206 (265)
..++||+|++.-.+|=. +..+..++++-|+|+|||.+++--...-..... ..-++.+++.
T Consensus 91 ~~~~~~~~~~dai~~iN~lHI~pw~~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN~~FD~~Lr~---------- 160 (201)
T pfam06080 91 PVEAPAPASYDAIFSINMIHISPWSCVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSNRDFDRSLRQ---------- 160 (201)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHH----------
T ss_conf 7555667660023300257737899999999999998515882687465025997688258999999985----------
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE
Q ss_conf 8876865789999968998999999997599537999855664
Q gi|254780624|r 207 GDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV 249 (265)
Q Consensus 207 ~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi 249 (265)
.|++ +- | -+-+++..+..++||+-.+...+--+-
T Consensus 161 ~dp~-~G-----i---RD~e~v~~lA~~~GL~l~~~~~MPANN 194 (201)
T pfam06080 161 RDPE-WG-----I---RDIEDVIALAAAQGLQLVKDVDMPANN 194 (201)
T ss_pred CCCC-CC-----C---CCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 0963-37-----8---389999999998799768665069988
No 114
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.62 E-value=5.3e-08 Score=71.75 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--------CCCCC
Q ss_conf 7997798602335577777664138863278721332222111100000112222222222233345--------75544
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--------FEANS 140 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--------~~d~s 140 (265)
.++.+|||+||.+|.++..++++.++.+.|+|||+.+ |-. -.+++|++||..+.. +....
T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~-~~p-----------i~gv~~i~gDi~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP-----------IVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCC-CCC-----------CCCCEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7899899806899757899999739997399986530-453-----------7896764034458899999999858987
Q ss_pred CCCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEE
Q ss_conf 67403664-----2013213------44320121000485211776
Q gi|254780624|r 141 FDACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 141 fD~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i 175 (265)
||+|++-. |.+.+.. -+.+|.=+.++|+|||.|++
T Consensus 118 ~DvVlSDmAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~ 163 (209)
T PRK11188 118 VDVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVV 163 (209)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 3089666665667870335999999999999999986267988999
No 115
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=98.62 E-value=5.9e-08 Score=71.44 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=84.7
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 9852064467997798602335577777664138863278721332222111100000112222222222233345--75
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--FE 137 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~~ 137 (265)
.+..+.++++ .+|||+|+|.|-=+..+++.+++.+.|+++|+++.-++..++++.+.|. .++.....|+.... ..
T Consensus 76 ~~~~L~p~~g--~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~~~~~~~d~~~~~~~~~ 152 (277)
T pfam01189 76 DAIALNPQED--EFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGV-FNIIVQEGDARQIDQKLL 152 (277)
T ss_pred HHHHHCCCCC--CEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCC
T ss_conf 9997188999--9898836788816999998758987799837978999999999997599-747999664445574346
Q ss_pred CCCCCCCEE-----EEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEE
Q ss_conf 544674036-----642-0132134----------------4320121000485211776
Q gi|254780624|r 138 ANSFDACTL-----AFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 138 d~sfD~V~~-----sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i 175 (265)
+..||.|.+ +-| +|.-|+. .+.|+++.+.|||||+++-
T Consensus 153 ~~~fD~vLvDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvY 212 (277)
T pfam01189 153 GGEFDRILLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVY 212 (277)
T ss_pred CCCCCEEEECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 666657997289889863455853121199999999999999999999997176998999
No 116
>KOG1661 consensus
Probab=98.59 E-value=2.3e-08 Score=74.02 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=84.8
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCC---------CCCCCCCC
Q ss_conf 9998520644679977986023355777776641388632-7872133222211110000011---------22222222
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKEN---------LQDCITFI 127 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~---------~~~~i~~~ 127 (265)
..+++.|....-++++.||+|+|||.++-.+++.....+. .+|||.-++.++.+++++.+.. -...+.++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEE
T ss_conf 99999999862347310133787408999999994577766514441599999999877765047304556414864799
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 2223334575544674036642013213443201210004852117763
Q gi|254780624|r 128 EANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 128 ~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
.||.....-+.+.||+|.+.= .-.+..+++..-|||||+++|.
T Consensus 150 vGDgr~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661 150 VGDGRKGYAEQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ECCCCCCCCCCCCCCEEEECC------CCCCCHHHHHHHHCCCCEEEEE
T ss_conf 677623477568766578766------7622479999863438728986
No 117
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.59 E-value=4.7e-08 Score=72.10 Aligned_cols=104 Identities=34% Similarity=0.506 Sum_probs=74.9
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--CCCCC-CCCCCCEEEEEE
Q ss_conf 986023355777776641388632787213322221111000001122222222222333--45755-446740366420
Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--LPFEA-NSFDACTLAFGI 150 (265)
Q Consensus 74 iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--lp~~d-~sfD~V~~sf~l 150 (265)
+||+|||+|..+ .+.+.......++|+|+++.|+..++.+... .....+.+..+|... +++++ .+||.+ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred EEEEECCCCHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCEEEEE-EECCH
T ss_conf 588603854689-9999735785799936888999999986300-45663576760421355675666657789-86123
Q ss_pred CCCHHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 132134432012100048521177630554
Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
.+..++...+.++.++|+|+|.+++.+...
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 443028999999998707886899996244
No 118
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.58 E-value=5.2e-08 Score=71.79 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC------CCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCC
Q ss_conf 7999999852064467997798602335577777664138------8632787213322221111000001122-22222
Q gi|254780624|r 54 RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD------NRSQIVVADINNEMLSVGRDRAFKENLQ-DCITF 126 (265)
Q Consensus 54 r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~------~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~ 126 (265)
|.--+-+++.+.|..++ +|+|-+||||.+.....++.. ...+++|.|+++.+...|+-++.-.+.. .....
T Consensus 32 r~Vv~lmv~ll~p~~~~--~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~~~~i 109 (312)
T pfam02384 32 REVSKLIVELLEPKPGE--SIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYNDFGI 109 (312)
T ss_pred HHHHHHHHHHHCCCCCC--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89999999982899999--8821687733789999999998437855655636889989999999999984798874552
Q ss_pred CCCCCCCCCC--CCCCCCCCEE--EEEECCCHH-------------------H-HHHHCCCCHHCCCCCEEEEE
Q ss_conf 2222333457--5544674036--642013213-------------------4-43201210004852117763
Q gi|254780624|r 127 IEANAETLPF--EANSFDACTL--AFGIRNMPH-------------------I-TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 127 ~~~da~~lp~--~d~sfD~V~~--sf~l~~~~d-------------------~-~~~l~e~~RvLKpGG~~~i~ 176 (265)
.++|...-|. .++.||+|++ -|+.+...+ . -..++.+...|||||+.+|+
T Consensus 110 ~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~~GraaiV 183 (312)
T pfam02384 110 RHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVV 183 (312)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 14776557676654551189837864667665432102721103687888744299999999856999769999
No 119
>PRK04457 spermidine synthase; Provisional
Probab=98.56 E-value=8.8e-08 Score=70.33 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=85.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 9998520644679977986023355777776641388632787213322221111000001122222222222333-457
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPF 136 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~ 136 (265)
+.++..+...+ .+.+||-||-|.|.++..+.++. |.++++.|+|.+..++.|++-..-..-.++++.+++|+.. +.-
T Consensus 55 r~Mm~~LLf~p-~Pk~vl~iGLGgGsl~k~~~~~~-P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg~~fv~~ 132 (262)
T PRK04457 55 RAMMGFLLFNP-RPQHILQIGLGGGSFAKFIDTYL-PDTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADGAEYIKV 132 (262)
T ss_pred HHHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 99999986589-97869999257019999999839-86758999878899999998657999997269995538999854
Q ss_pred CCCCCCCCEE-EEEECCCH---HHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 5544674036-64201321---34432012100048521177630554
Q gi|254780624|r 137 EANSFDACTL-AFGIRNMP---HITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 137 ~d~sfD~V~~-sf~l~~~~---d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
..+++|+|.+ +|.=...+ .-...++++++.|+|||.+++-=++.
T Consensus 133 ~~~~~DvI~vD~fd~~g~~~~L~t~~Fy~~c~~~L~~~Gvlv~Nl~~~ 180 (262)
T PRK04457 133 FPASTDVILVDGFDGEQIVDALVTQPFFRDCRNALSSDGVFVTNLWSG 180 (262)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 867778899968898888600082999999998649893999986889
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=98.53 E-value=8.5e-08 Score=70.42 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=91.4
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCCCCCCC-
Q ss_conf 998520644679977986023355777776641388632787213322221111000001122-222222222333457-
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANAETLPF- 136 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da~~lp~- 136 (265)
-++..|+|++.+ .|||+|.-+|-=|-.+++..+++++|+++|+...=|+.-.+...+.|+. -.|.-.++|.....+
T Consensus 262 ~va~~L~P~~~E--~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~~~~~~~W 339 (487)
T TIGR00563 262 WVATLLDPKNEE--TILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGDKAGPKEW 339 (487)
T ss_pred HHHHHHCCCCCC--EEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCC
T ss_conf 999973889887--477311484570476774247972089886212578899999986188378877202567766544
Q ss_pred --CCC----CCCCCE-----EEEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf --554----467403-----6642-0132134----------------4320121000485211776305544
Q gi|254780624|r 137 --EAN----SFDACT-----LAFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 137 --~d~----sfD~V~-----~sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
|.+ .||.|. |++| ||==||. .+.|++|.-.||+||+++ +++.
T Consensus 340 ~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP~vK~GGtLv---YsTC 409 (487)
T TIGR00563 340 LAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAPLVKKGGTLV---YSTC 409 (487)
T ss_pred CCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE---EEEC
T ss_conf 452010233314215607877443300178755566856517899999999998856535797588---8614
No 121
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=98.53 E-value=1.8e-07 Score=68.36 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHHCCC---CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 80179999998520644---679977986023355777776641388632787213322221111000001122222222
Q gi|254780624|r 51 GLHRFWKEAMVTNLNPR---KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI 127 (265)
Q Consensus 51 G~~r~Wr~~~i~~l~~~---~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~ 127 (265)
..+..|.+++++.+.+. +....+++|+|+|.|.-...++-.. |..+++.+|-+..-...-++=..+.++ .|++.+
T Consensus 26 ~~~~i~~rHi~DSl~~~~~~~~~~~~ilDiGSGaGfPGi~LAI~~-p~~~~~LvEs~~KK~~FL~~v~~~L~L-~nv~v~ 103 (184)
T pfam02527 26 EPNELLERHLLDSLVVLEYLDNIRIKVADVGSGAGFPGIPLAIAF-PDKKLTLLESLLKKINFLEELKKELNL-ENVTIV 103 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf 989999999999999877426679868834798884679999967-785599992828999999999998599-976999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 2223334575544674036642013213443201210004852117763
Q gi|254780624|r 128 EANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 128 ~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+..+|+++. ..+||.|++ |-|.+....+.-....+++||+++.+
T Consensus 104 ~~R~E~~~~-~~~~D~v~a----RA~a~l~~ll~~~~~~l~~~g~~i~~ 147 (184)
T pfam02527 104 HARAEEYQH-EEQYDVITS----RAVASLNELTEWALPLLKPGGYFLAY 147 (184)
T ss_pred ECCHHHCCC-CCCCCEEEE----CHHCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 560441464-467878998----10057999999999863889899998
No 122
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=2.2e-07 Score=67.73 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHCCCCCC---CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 80179999998520644679---977986023355777776641388632787213322221111000001122222222
Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRKSK---DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI 127 (265)
Q Consensus 51 G~~r~Wr~~~i~~l~~~~~~---~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~ 127 (265)
..+..|.+++++.+.+.+.. +.+++|||+|.|.-...++=.. +..+++-+|....=+..-++-..+.++ +|++.+
T Consensus 45 ~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~ 122 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGL-ENVEIV 122 (215)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHC-CCCCEEEECCCCHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 878999999999864665025668879985799997317688856-688189971675079999999998599-974986
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 222333457554467403664201321344320121000485211776
Q gi|254780624|r 128 EANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 128 ~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
++.||++.-+...||+||+- -+.+....+.=+...+|+||.++.
T Consensus 123 ~~RaE~~~~~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 123 HGRAEEFGQEKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHHHCCCCCCCCCEEEEE----EECCHHHHHHHHHHHCCCCCCCHH
T ss_conf 31276601446657589854----202568899999984346883202
No 123
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=98.52 E-value=1e-07 Score=69.88 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=75.2
Q ss_pred CCCCCCEEEECCHHHHH----HHHHHHHHCC----CCCEEEEECCCCCCCCCCCCCH-----------------------
Q ss_conf 46799779860233557----7777664138----8632787213322221111000-----------------------
Q gi|254780624|r 67 RKSKDYRVLDVAGGTGD----VAFRIAEASD----NRSQIVVADINNEMLSVGRDRA----------------------- 115 (265)
Q Consensus 67 ~~~~~~~iLDiGcGTG~----~~~~l~~~~~----~~~~v~giD~s~~Ml~~a~~r~----------------------- 115 (265)
+..+..+|+=+||.||. ++..+.+..+ ...+|+|.|+|+.+|+.|++=.
T Consensus 27 ~~~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~ 106 (194)
T pfam01739 27 RNSRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAG 106 (194)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCC
T ss_conf 88995599973688995189999999997432578744999973988999999878988999845999999962860789
Q ss_pred ----HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEE
Q ss_conf ----001122222222222333457554467403664201321--3443201210004852117763
Q gi|254780624|r 116 ----FKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 116 ----~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
.+..+...|.|.+.|..+-|.+ ..||+|+|--.|-++. ...++++.+++.|+|||.+++-
T Consensus 107 ~~~~i~~~lr~~V~F~~~NL~~~~~~-~~~DlIfCRNVlIYF~~~~~~~vl~~l~~~L~~gG~L~lG 172 (194)
T pfam01739 107 GGYRVKPEIKEMVLFEYHNLLDYPPL-GDFDVIFCRNVLIYFDEETQRKILNRFASALKPGGYLFLG 172 (194)
T ss_pred CCEEECHHHHCCCEEEECCCCCCCCC-CCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 94876889971166854665568876-7503999802101379999999999999984899499980
No 124
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=98.49 E-value=1.3e-06 Score=62.82 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=99.5
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-------CC----H----------------------
Q ss_conf 79977986023355777776641388632787213322221111-------00----0----------------------
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR-------DR----A---------------------- 115 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~-------~r----~---------------------- 115 (265)
..+.+||==|||.|.++..++.+. ..+.|.++|--||-..+ +. +
T Consensus 56 ~~~~~VLVPGaGLGRLa~Eia~~G---~~~~gNE~S~~Mllas~fiLn~~~~~~~~~i~Pfi~~~Sn~~~~~dqlr~v~i 132 (268)
T pfam07942 56 RSKIRILVPGAGLGRLAYELATLG---YQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQLTRDDQLRPVQI 132 (268)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHCEEEEEC
T ss_conf 778289976988037899987256---46887212199999999998525877828996325366687898897555765
Q ss_pred ------HCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHH
Q ss_conf ------0011222222222223334-575544674036642013213443201210004852117763055445510112
Q gi|254780624|r 116 ------FKENLQDCITFIEANAETL-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKK 188 (265)
Q Consensus 116 ------~~~~~~~~i~~~~~da~~l-p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~ 188 (265)
.......++....||...+ +-..++||+|++.|=|-.-+|.-..|+.|+++|||||.++- +.+
T Consensus 133 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN----------~GP 202 (268)
T pfam07942 133 PDVHPLSELGPRGNFSMCAGDFLEVYGEDANSYDVVVTCFFIDTAHNVLEYIDTIEKILKPGGHWIN----------LGP 202 (268)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEE----------CCC
T ss_conf 8868101479998414870035898388878226899998766468899999999998366988996----------467
Q ss_pred HHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC-CC-----------C--EEEEEE
Q ss_conf 345653111332102542887686578999996899899999999759953799985-56-----------6--499999
Q gi|254780624|r 189 IYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY-TN-----------G--VVALHS 254 (265)
Q Consensus 189 ~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~-~~-----------G--i~~i~~ 254 (265)
+...|. |. .+ ..||+ .+.+|+..+.++.||+.++.+.- -- + -+.-++
T Consensus 203 Llyh~~----~~------~~-------~~siE--Ls~eEi~~l~~~~GF~~~~~~~~i~~~Y~~d~~Sm~q~~Y~~~f~v 263 (268)
T pfam07942 203 LLYHFE----PL------PD-------EMSIE--LSLEDIKRLATKRGFKDEKEETGILNGYTTNYESMMQGYYGCVFWV 263 (268)
T ss_pred CCCCCC----CC------CC-------CCCEE--CCHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHCCCCCEEEE
T ss_conf 012457----77------88-------76000--6899999999856977998883024677579889823456718999
Q ss_pred EEEEC
Q ss_conf 98116
Q gi|254780624|r 255 GWKCE 259 (265)
Q Consensus 255 g~Kp~ 259 (265)
++||.
T Consensus 264 a~Kp~ 268 (268)
T pfam07942 264 ARKPP 268 (268)
T ss_pred EECCC
T ss_conf 96899
No 125
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=98.49 E-value=9e-08 Score=70.26 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=82.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC---
Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333---
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--- 133 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--- 133 (265)
=.++.+.+++...+ +|||+=||-|.+++.||+..+ +++|+|+.++|++.|++++...++ .||+|..+++|.
T Consensus 283 ~~~a~~~l~Lqg~e--~V~DayCG~GtftLpLA~qak---~v~G~E~v~e~v~~a~~NAe~Ng~-~N~~F~~g~~E~~~p 356 (434)
T TIGR00479 283 VDRALEALELQGEE--KVVDAYCGVGTFTLPLAKQAK---SVVGVEVVPESVEDAKRNAELNGI-ANVEFLAGTLETVLP 356 (434)
T ss_pred HHHHHHHHHCCCCC--EEEEEECCCCCCHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHCC
T ss_conf 99999997159865--578631575520044440121---888871437678999888886035-320133312321101
Q ss_pred -CCCCCCCCCCCEEEEEECCCHHHH------HHHCCCCHHCCCCCEEEE
Q ss_conf -457554467403664201321344------320121000485211776
Q gi|254780624|r 134 -LPFEANSFDACTLAFGIRNMPHIT------LVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 134 -lp~~d~sfD~V~~sf~l~~~~d~~------~~l~e~~RvLKpGG~~~i 175 (265)
.|-+..+||.|+. ||. .+|++|.+ |||-=.+.|
T Consensus 357 ~~~~e~~~~D~~ll--------DPPR~GCa~~~L~~I~~-~kP~rivYV 396 (434)
T TIGR00479 357 KQPWEGISPDVVLL--------DPPRKGCAAEVLRTIIK-LKPKRIVYV 396 (434)
T ss_pred CCCCCCCCCCEEEE--------CCCCCCCHHHHHHHHHH-CCCEEEEEE
T ss_conf 44222677898888--------88898745899998862-077059998
No 126
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.9e-08 Score=70.29 Aligned_cols=70 Identities=29% Similarity=0.444 Sum_probs=56.2
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL 146 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~ 146 (265)
++..|+|+|||||.+++..+-.. + ..|+|+|+.+++++.+++.+.+ +..+|+|.++|+.+.. ..||.|.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred CCCEEEECCCCCCHHHHHHHHCC-C-CEEEEEECCHHHHHHHHHHHHH--HCCCEEEEECCHHHCC---CCCCEEEE
T ss_conf 78888882788478899998629-7-1799993698999999988886--0884699982101147---76666997
No 127
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.48 E-value=3.3e-07 Score=66.61 Aligned_cols=120 Identities=22% Similarity=0.274 Sum_probs=79.3
Q ss_pred HHHHHHHHCC-CCCCCCEEEECCHHHH----HHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCHHC-----C----
Q ss_conf 9999852064-4679977986023355----777776641388----63278721332222111100000-----1----
Q gi|254780624|r 57 KEAMVTNLNP-RKSKDYRVLDVAGGTG----DVAFRIAEASDN----RSQIVVADINNEMLSVGRDRAFK-----E---- 118 (265)
Q Consensus 57 r~~~i~~l~~-~~~~~~~iLDiGcGTG----~~~~~l~~~~~~----~~~v~giD~s~~Ml~~a~~r~~~-----~---- 118 (265)
++.++..+.. ..+...+|.-+||+|| .++..+.+..+. ..+|+|.||+..+|+.|+.=.-. .
T Consensus 82 ~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~ 161 (268)
T COG1352 82 RDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPP 161 (268)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCH
T ss_conf 99987998730469853999667689955899999999873322587438999979999999986288876676544998
Q ss_pred -------------------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf -------------------12222222222233345755446740366420132--13443201210004852117763
Q gi|254780624|r 119 -------------------NLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 119 -------------------~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
.+..+|.|.+.|...-++..+.||+|+|--+|-.+ +...++++.++..|+|||.+++-
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9996337646998479876876243775357888754358988899841488637899999999999974899789982
No 128
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.1e-07 Score=67.93 Aligned_cols=115 Identities=25% Similarity=0.399 Sum_probs=83.9
Q ss_pred HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 8520644679977986023355777776641388632-78721332222111100000112222222222233345---7
Q gi|254780624|r 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP---F 136 (265)
Q Consensus 61 i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp---~ 136 (265)
...|.++++ .+|||+|++.|-=|..+++...+.+. |+++|.++.=++..++++.+.|.. |+...+.|+..++ .
T Consensus 149 a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 149 ALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHCCCCCC--CEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCC
T ss_conf 997199997--968880799976999999966899876997449878999999999971998-34899513301431134
Q ss_pred CCCCCCCCE-----EEEE-ECCCHH----------------HHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 554467403-----6642-013213----------------44320121000485211776305544
Q gi|254780624|r 137 EANSFDACT-----LAFG-IRNMPH----------------ITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 137 ~d~sfD~V~-----~sf~-l~~~~d----------------~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
....||.|. ++.| +|-=|| ..+.|..+.++|||||+++ +|+.
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV---YSTC 289 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV---YSTC 289 (355)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEC
T ss_conf 557778599879998771133581232038999999999999999999998448798899---9902
No 129
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.47 E-value=1.5e-07 Score=68.79 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=72.6
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--------CCCCC-
Q ss_conf 799779860233557777766413886327872133222211110000011222222222223334--------57554-
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--------PFEAN- 139 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--------p~~d~- 139 (265)
.++..||||||-+|-++.......+..+.|+|||+.+ | .... ..|+.|++||.+.- -.++.
T Consensus 31 k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~-~--------k~FP-~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP-M--------KGFP-IENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC-C--------CCCC-CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 0788678657898738778877606853389985455-7--------8856-4661475447678789999998578987
Q ss_pred -CCCCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEE
Q ss_conf -467403664-----2013213------44320121000485211776
Q gi|254780624|r 140 -SFDACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 140 -sfD~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i 175 (265)
..|+|.|-- |.+.+.+ .+.+|+=+.+||+|+|-|++
T Consensus 101 kk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~Gnfvv 148 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 148 (192)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 437789852688878987543443799999999999998615898999
No 130
>KOG1663 consensus
Probab=98.47 E-value=1.6e-07 Score=68.63 Aligned_cols=101 Identities=25% Similarity=0.354 Sum_probs=82.8
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-C-----CCCCCCCCCCE
Q ss_conf 77986023355777776641388632787213322221111000001122222222222333-4-----57554467403
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-L-----PFEANSFDACT 145 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-l-----p~~d~sfD~V~ 145 (265)
.+.||+|.=||..++.+|...++.++|+++|+.+.-.+.+.+..+..+....|++++|+|.+ | ..+.++||.|+
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 33899812127899999974599965999961868888759999860633034234252566699998557998425999
Q ss_pred EEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 664201321344320121000485211776
Q gi|254780624|r 146 LAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 146 ~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
+- +.=.+......++.+.||+||.+++
T Consensus 155 vD---adK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663 155 VD---ADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EC---CCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 73---6667789999999856213538999
No 131
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.46 E-value=1.1e-07 Score=69.59 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=78.9
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCCCC-CCC---CCCCCCCCE
Q ss_conf 977986023355777776641388632787213322221111000001122-222222222333-457---554467403
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANAET-LPF---EANSFDACT 145 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da~~-lp~---~d~sfD~V~ 145 (265)
+.++||+-|=||..+...+...- .+||+||+|..-|+.|+++..-.+.. ..+.|+++|+.+ |.. ...+||+|+
T Consensus 218 GkrvLNlFsYTGgfsv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 87678864667699999986699--7148982657899999999986299710105672239999999985599556899
Q ss_pred E---EEEE------CCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 6---6420------13213443201210004852117763
Q gi|254780624|r 146 L---AFGI------RNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 146 ~---sf~l------~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+ +|+= +-.-|....+..+.++|+|||.++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~lL~pgG~l~~~ 335 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7881003582100538989999999999970799689999
No 132
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=98.44 E-value=1.6e-06 Score=62.15 Aligned_cols=156 Identities=15% Similarity=0.241 Sum_probs=90.3
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHH-HHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC----CCC-----------
Q ss_conf 99985206446799779860233557777-76641388632787213322221111000001----122-----------
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAF-RIAEASDNRSQIVVADINNEMLSVGRDRAFKE----NLQ----------- 121 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~-~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~----~~~----------- 121 (265)
+.+.+...+..-++.++||||||+-.... .+++.+ -+|++.|.++.-.+.-++=+.+. .+.
T Consensus 44 ~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~f---~~I~lsDy~~~Nr~el~kWl~~ep~afDWs~~~~~v~~lEG 120 (261)
T pfam01234 44 PNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEVF---KEIHLSDYLPQNRDELIKWLKKEPGAFDWSPVLKHICELEG 120 (261)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHC---CEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 999998377874666899847894588887677650---71786025576799999997069986666199999986226
Q ss_pred -------------CCC-CCCCCCCCC-CCCC----CCCCCCCEEEEEECCC----HHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf -------------222-222222333-4575----5446740366420132----1344320121000485211776305
Q gi|254780624|r 122 -------------DCI-TFIEANAET-LPFE----ANSFDACTLAFGIRNM----PHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 122 -------------~~i-~~~~~da~~-lp~~----d~sfD~V~~sf~l~~~----~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
..| ..+.+|... -|+. =..||+|+++|+|... +...++++++..+|||||.+++...
T Consensus 121 ~~~~~~e~ee~lR~~Ik~Vl~cDV~~~~pl~~~~~lp~~D~v~S~~cLE~ac~d~~~Y~~av~ni~~LLkpGG~Lil~gv 200 (261)
T pfam01234 121 DRECWQEKEEKLRALVKRVLKCDVHQSPPLGAGVQLPPADCVVTIFCLEYACPDLEEYCRALRNLASLLKPGGHLVLGGV 200 (261)
T ss_pred CCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 76415788899998864488765568888888666788558847622556619999999999999864788846999986
Q ss_pred CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 54455101123456531113321025428876865789999968998999999997599537999
Q gi|254780624|r 179 SEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 179 ~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265)
-..+ .|. + |... |.-| -.+.+.+.+.++++||...+.+
T Consensus 201 l~~t---------~Y~----------v-G~~~-F~~l------~l~ee~v~~Al~~aG~~i~~~~ 238 (261)
T pfam01234 201 LEES---------WYM----------F-GEKK-FSCL------YLSKEVVEDALVDAGLDVEALQ 238 (261)
T ss_pred CCCC---------EEE----------E-CCEE-CCEE------ECCHHHHHHHHHHCCCEEEEEE
T ss_conf 1773---------488----------7-8986-0225------2289999999997797789978
No 133
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=98.41 E-value=3.3e-07 Score=66.62 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=69.9
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC-CCCCCCCCCCCCC-CCC---CCCCCCCCCC
Q ss_conf 9977986023355777776641388632787213322221111000001-1222222222223-334---5755446740
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCITFIEANA-ETL---PFEANSFDAC 144 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~-~~~~~i~~~~~da-~~l---p~~d~sfD~V 144 (265)
++.+||++|||||..++.++.... .++|+..|. ++.+...+.++... ....++++..-|= ++. -...+.||+|
T Consensus 44 ~~k~VLELGaG~GL~Gi~~a~~~~-~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~I 121 (171)
T pfam10294 44 SGKNVLELGSGCGLVGIAVALLLP-GASVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDLI 121 (171)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCC-CCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEE
T ss_conf 687678705665758999998579-858996383-789999999999705789966999811089884333146776789
Q ss_pred EEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 36642013213443201210004852117763
Q gi|254780624|r 145 TLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 145 ~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
..|-++-+-+..+..++-+...|+|+|++++.
T Consensus 122 l~sD~iY~~~~~~~L~~ti~~ll~~~g~~lla 153 (171)
T pfam10294 122 LAADCVYNEDAFPLLVKTLKDLLGKETVILVA 153 (171)
T ss_pred EEECEEECHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 97121335777999999999995899899999
No 134
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.39 E-value=2.8e-07 Score=67.08 Aligned_cols=70 Identities=16% Similarity=0.308 Sum_probs=56.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
+.+++.+.+..+ .+||+=||+|.+++.+|+.. .+|+|+++++++++.|++++...+. .|++|+++||+++
T Consensus 198 ~~a~~~~~~~~~---~vlDLYcG~Gtfsl~LA~~~---~~V~gVE~~~~aV~~A~~NA~~N~i-~N~~fi~~~a~~~ 267 (363)
T PRK05031 198 EWALDATKGSKG---DLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEF 267 (363)
T ss_pred HHHHHHHHCCCC---CEEEEECCCCHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCHHHH
T ss_conf 999997613898---28986058664269988626---8799995389999999999998699-8649996589999
No 135
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.38 E-value=4e-07 Score=66.05 Aligned_cols=107 Identities=24% Similarity=0.375 Sum_probs=72.1
Q ss_pred CCCCEEEECCHHHHH----HHHHHHHHC---CCCCEEEEECCCCCCCCCCCCCH------H--------C----------
Q ss_conf 799779860233557----777766413---88632787213322221111000------0--------0----------
Q gi|254780624|r 69 SKDYRVLDVAGGTGD----VAFRIAEAS---DNRSQIVVADINNEMLSVGRDRA------F--------K---------- 117 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~----~~~~l~~~~---~~~~~v~giD~s~~Ml~~a~~r~------~--------~---------- 117 (265)
+...||.-.||-||. ++..+.+.. +...+|+|.|||+.+|+.|++=+ . +
T Consensus 114 ~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~ 193 (287)
T PRK10611 114 SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHE 193 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCC
T ss_conf 89758997677887239999999999732377770799997988899999808988899845999999511641578766
Q ss_pred ------CCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEE
Q ss_conf ------11222222222223334575-5446740366420132--1344320121000485211776
Q gi|254780624|r 118 ------ENLQDCITFIEANAETLPFE-ANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 118 ------~~~~~~i~~~~~da~~lp~~-d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i 175 (265)
..+...|.|.+.|..+.+++ .+.||+|+|--+|=.+ +...++++.+++.|+|||.+++
T Consensus 194 g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCRNVlIYFd~~~q~~vl~~~~~~L~pgG~L~l 260 (287)
T PRK10611 194 GLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCRNVMIYFDKTTQQEILRRFVPLLKPDGLLFA 260 (287)
T ss_pred CEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 6187457876307771400679988888995199978405367899999999999998689928998
No 136
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.38 E-value=2.7e-07 Score=67.17 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345-75
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FE 137 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~ 137 (265)
.+.+.+.+.. +.+|||+-||+|.+++.+++.. .+|+|+|+++++++.|++.+...++ .|++|+.+|++... -.
T Consensus 224 ~~~~~~~~~~--~~~vlDlycG~G~~sl~lA~~~---~~V~gvE~~~~av~~A~~na~~ngi-~nv~f~~~d~~~~~~~~ 297 (375)
T PRK03522 224 TARDWVRELP--PKSMWDLFCGVGGFGLHCATPD---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ 297 (375)
T ss_pred HHHHHHHCCC--CCEEEEECCCCCHHHHHHHHCC---CEEEEEEECHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHC
T ss_conf 9999863158--9789996578538889876417---8899998459999999999998699-87699973778887634
Q ss_pred CCCCCCCE
Q ss_conf 54467403
Q gi|254780624|r 138 ANSFDACT 145 (265)
Q Consensus 138 d~sfD~V~ 145 (265)
+..+|+|+
T Consensus 298 ~~~~d~vv 305 (375)
T PRK03522 298 GEVPELVL 305 (375)
T ss_pred CCCCCEEE
T ss_conf 56897899
No 137
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=98.36 E-value=6.1e-07 Score=64.92 Aligned_cols=90 Identities=21% Similarity=0.406 Sum_probs=70.2
Q ss_pred HCCCH----HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 14801----79999998520644679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 49 SLGLH----RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 49 S~G~~----r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
||||| ..--+++++...+..+ ..||+||.|+|.+|..|++.. .+|+++++-+.|+..-+++....+..+++
T Consensus 15 ~lGQnFL~D~~i~~~Iv~~a~~~~~--d~VlEIGPG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~~~~n~ 89 (296)
T PTZ00338 15 KFGQHILKNPLVLDKIVEKAAIKPT--DTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKL 89 (296)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCC--CEEEEECCCCHHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHCCCCCCCC
T ss_conf 7762205898999999996078989--957996685429999998358---91799994889999999998514456673
Q ss_pred CCCCCCCCCCCCCCCCCCCCE
Q ss_conf 222222333457554467403
Q gi|254780624|r 125 TFIEANAETLPFEANSFDACT 145 (265)
Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~ 145 (265)
+.+++|+.+..++ .||.|+
T Consensus 90 ~ii~~D~Lk~d~~--~~~~vV 108 (296)
T PTZ00338 90 QVIEGDALKTEFP--YFDVCV 108 (296)
T ss_pred EEECCHHHHCCCC--CCCEEE
T ss_conf 5770505318564--114466
No 138
>KOG1500 consensus
Probab=98.36 E-value=1.6e-06 Score=62.17 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=74.6
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE---E
Q ss_conf 9779860233557777766413886327872133222211110000011222222222223334575544674036---6
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL---A 147 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~---s 147 (265)
+..|||+|||.|.++.-.++... .+|++++.|+ |-..|++-++..++..+|..+.|..|++.+| +..|++.+ +
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500 178 DKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCEEEEECCCCCHHHHHHHHHCC--CEEEEEEHHH-HHHHHHHHHHCCCCCCEEEECCCCCCEECCC-CCCCEEEECCCH
T ss_conf 74899815882489999987386--5389874567-9999999874366320378705632010375-103478725621
Q ss_pred EEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 420132134432012100048521177
Q gi|254780624|r 148 FGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 148 f~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
|.|-|--=++..+ -+.|.|||.|.+.
T Consensus 254 ~mL~NERMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500 254 YMLVNERMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCCCCC
T ss_conf 4111088899999-9987428777446
No 139
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.36 E-value=6.7e-07 Score=64.63 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=89.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233345--
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-- 135 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-- 135 (265)
+++.+.+.+.-+ .-||++|-|||.++..++.+.-....++.++.|++....-.++ .+.++++.|||.++.
T Consensus 38 ~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~------~p~~~ii~gda~~l~~~ 109 (194)
T COG3963 38 RKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL------YPGVNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHCCCCCCC--CEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHH------CCCCCCCCCCHHHHHHH
T ss_conf 999843484459--7647776986676899996579954368998277999999975------88751305405657877
Q ss_pred ---CCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf ---75544674036642013213--443201210004852117763055
Q gi|254780624|r 136 ---FEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 136 ---~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
+++..||.|.|+.-+.|+|- ..+.|++...-|.+||.++-.-++
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 8652797401688656002486778999999999856899727999846
No 140
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.35 E-value=6.6e-07 Score=64.66 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC--C-CCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 6799779860233557777766413886327872133222211110000011--2-2222222222333-4575544674
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN--L-QDCITFIEANAET-LPFEANSFDA 143 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~--~-~~~i~~~~~da~~-lp~~d~sfD~ 143 (265)
.++..+||-+|.|.|.++.+++++. +..+++.+||.+..++.|++-..... . .++++.+.+|+.+ +.-..++||+
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCE
T ss_conf 7997769998897669999998368-843379997088999999986667543357973689961079998748876778
Q ss_pred CEEEEEECCCHHH---------HHHHCCCCHHCCCCCEEEEE
Q ss_conf 0366420132134---------43201210004852117763
Q gi|254780624|r 144 CTLAFGIRNMPHI---------TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 144 V~~sf~l~~~~d~---------~~~l~e~~RvLKpGG~~~i~ 176 (265)
|.+- ..|+ ...++.++|.|+|+|.++..
T Consensus 153 Ii~D-----~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVD-----STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEC-----CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 9985-----889988430237799999999862889689994
No 141
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=5.4e-07 Score=65.26 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=92.2
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333457
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF 136 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~ 136 (265)
|.++++... ++.+|||+=+|-|-+++.+|++..+ +|+++|++|..++..++.+.-.+....|..++||+..++.
T Consensus 179 R~Rva~~v~----~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 179 RARVAELVK----EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHHHC----CCCEEEECCCCCCCCHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 999986306----9988998357865401246654786--3999945989999999999855765515679664888502
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 55446740366420132134432012100048521177630554
Q gi|254780624|r 137 EANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 137 ~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
+-..+|.|.+.+ ..+-...+..+.+.+|+||.+...++..
T Consensus 253 ~~~~aDrIim~~----p~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 253 ELGVADRIIMGL----PKSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred CCCCCCEEEECC----CCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 046678898389----8720233899999851486799996224
No 142
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=98.31 E-value=1.1e-06 Score=63.24 Aligned_cols=105 Identities=22% Similarity=0.182 Sum_probs=74.3
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHH-----------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 799779860233557777766413886327872133222211110000-----------011222222222223334575
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAF-----------KENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~-----------~~~~~~~i~~~~~da~~lp~~ 137 (265)
.++.|||=-|||.|.-..+++++. .+|+|+|+|+..++.+.+... ......+|++.+||..+++-.
T Consensus 21 ~~~~rvlVPlCGks~D~~wLa~~G---~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~l~~~ 97 (203)
T pfam05724 21 PPGLRVLVPLCGKALDMVWLAEQG---HFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFTLPRE 97 (203)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHCCCHH
T ss_conf 999889996899859999998389---84899956799999999973788751013662132058648997732137843
Q ss_pred C-CCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 5-446740366420132--13443201210004852117763
Q gi|254780624|r 138 A-NSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d-~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
. ++||+|.=.-+|..+ ..+.+..+.+.++|+|||+.+++
T Consensus 98 ~~g~fD~IyDraal~ALpp~~R~~Ya~~l~~lL~pgg~~lLi 139 (203)
T pfam05724 98 ELGKFDLIYDRAALCALPPEMRPRYAKQMYELLPPGGEGLLI 139 (203)
T ss_pred HCCCCCEEEEECCEEECCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 468734899703235389899999999999971899669999
No 143
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=9.1e-07 Score=63.76 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=69.5
Q ss_pred HCCCH----HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 14801----79999998520644679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 49 SLGLH----RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 49 S~G~~----r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
++||| ..-.++.++.+.+.+ +..||+||+|+|.+|..|+++. .+|+++++-+.|+..-+++.. ...|+
T Consensus 7 ~~GQnFL~d~~v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~ 78 (259)
T COG0030 7 RLGQNFLIDKNVIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNL 78 (259)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCC--CCEEEEECCCCCHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHC---CCCCE
T ss_conf 766454147879999998557899--9869997898778899999606---957999968899999997506---56655
Q ss_pred CCCCCCCCCCCCCCC-CCCCCEE
Q ss_conf 222222333457554-4674036
Q gi|254780624|r 125 TFIEANAETLPFEAN-SFDACTL 146 (265)
Q Consensus 125 ~~~~~da~~lp~~d~-sfD~V~~ 146 (265)
+.+++||.+.++++. .++.|++
T Consensus 79 ~vi~~DaLk~d~~~l~~~~~vVa 101 (259)
T COG0030 79 TVINGDALKFDFPSLAQPYKVVA 101 (259)
T ss_pred EEEECCHHCCCCHHHCCCCEEEE
T ss_conf 99947242475135157888998
No 144
>PRK03612 spermidine synthase; Provisional
Probab=98.30 E-value=7.4e-07 Score=64.36 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--HHCCC----CCCCCCCCCCCC
Q ss_conf 999852064467997798602335577777664138863278721332222111100--00011----222222222223
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR--AFKEN----LQDCITFIEANA 131 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r--~~~~~----~~~~i~~~~~da 131 (265)
+.++.-.-...+++.+||=+|.|.|..+.++.++ +.-.+|+.+|+.++|++.||+. ..+.+ ..++++.+.+||
T Consensus 281 E~LvHp~m~~~~~p~~VLiiGGGdG~a~revLk~-~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da 359 (516)
T PRK03612 281 EALVHPALAASPRARRVLILGGGDGLALREVLKY-PDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDA 359 (516)
T ss_pred HHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHH
T ss_conf 6340402156999773899837760879998648-996637899518899999985721444412323499648985378
Q ss_pred CC-CCCCCCCCCCCEEEEEECCCHHHH----------HHHCCCCHHCCCCCEEEEEE
Q ss_conf 33-457554467403664201321344----------32012100048521177630
Q gi|254780624|r 132 ET-LPFEANSFDACTLAFGIRNMPHIT----------LVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 132 ~~-lp~~d~sfD~V~~sf~l~~~~d~~----------~~l~e~~RvLKpGG~~~i~d 177 (265)
.+ +.-.+++||+|++- .|||. ...+.+.+.|+|||.+++.-
T Consensus 360 ~~~l~~~~~~yDvIi~D-----~pdP~~~~~~~LYs~eFY~~~~~~L~~~G~~v~qs 411 (516)
T PRK03612 360 FNWLRKLPETFDAIIVD-----LPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 411 (516)
T ss_pred HHHHHHCCCCCCEEEEE-----CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99998688878889981-----89979952246753999999998449995899936
No 145
>PRK00811 spermidine synthase; Provisional
Probab=98.29 E-value=7.5e-07 Score=64.30 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=77.5
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC--CC--CCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 67997798602335577777664138863278721332222111100000--11--22222222222333-457554467
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK--EN--LQDCITFIEANAET-LPFEANSFD 142 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~--~~--~~~~i~~~~~da~~-lp~~d~sfD 142 (265)
.+++.+||-+|.|.|..+.+++++ +.-.+|+.+|+-+.+++.|++-..+ .+ -.++++.+.+|+.+ +.-.+++||
T Consensus 76 h~~pk~VLIiGGGDGg~~rE~lkh-~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yD 154 (283)
T PRK00811 76 HPNPKKVLIIGGGDGGTLREVLKH-PSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFD 154 (283)
T ss_pred CCCCCEEEEECCCCHHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCC
T ss_conf 899774899568747999998427-8856799994689999999998388631330297159982789999984523554
Q ss_pred CCEEEEEECCCHHH---------HHHHCCCCHHCCCCCEEEEE
Q ss_conf 40366420132134---------43201210004852117763
Q gi|254780624|r 143 ACTLAFGIRNMPHI---------TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 143 ~V~~sf~l~~~~d~---------~~~l~e~~RvLKpGG~~~i~ 176 (265)
+|.+- .+|| +...+.+++.|+|||.++..
T Consensus 155 vII~D-----~tDP~gpa~~Lft~~Fy~~~~~~L~~~Gi~v~Q 192 (283)
T PRK00811 155 VIIVD-----STDPVGPAEGLFTKEFYENCKRALKEGGIFVAQ 192 (283)
T ss_pred EEEEE-----CCCCCCHHHHHCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 89980-----899886445534599999999853999589992
No 146
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=98.29 E-value=1.3e-06 Score=62.74 Aligned_cols=118 Identities=16% Similarity=0.268 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHCCCCC----C----CCEEEECCHHHHHHHHHHH-HHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC
Q ss_conf 017999999852064467----9----9779860233557777766-413886327872133222211110000011222
Q gi|254780624|r 52 LHRFWKEAMVTNLNPRKS----K----DYRVLDVAGGTGDVAFRIA-EASDNRSQIVVADINNEMLSVGRDRAFKENLQD 122 (265)
Q Consensus 52 ~~r~Wr~~~i~~l~~~~~----~----~~~iLDiGcGTG~~~~~l~-~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~ 122 (265)
..+.|.+++++.+..... . +.+++|||+|.|.-...++ =. .|+.+++-+|.+..=+..-++=.++.++ .
T Consensus 23 ~~~~~~~h~lDSl~~~~~~~~~~~~r~~~~~~DiGSG~GfPGipL~Ci~-~p~~~~~Lles~~KK~~FL~~v~~~L~L-~ 100 (197)
T TIGR00138 23 PEEIIQRHLLDSLKLLELFDISKNQRTGKKVIDIGSGAGFPGIPLACIL-RPELKLTLLESNKKKVNFLKEVKKELGL-N 100 (197)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHCC-C
T ss_conf 1678776402224330000245666633126773478971456534220-5764289842774068999999998389-9
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 22222222333---4575544674036642013213443201210004852117763
Q gi|254780624|r 123 CITFIEANAET---LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 123 ~i~~~~~da~~---lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
||+.+++.+|+ .+. ..+||.||+- + +.+....+.-+...+|+||+++.+
T Consensus 101 N~~i~~~R~E~~g~~~~-~~~~D~~~~R-A---l~~l~~~~e~~~~L~~~~G~~~~~ 152 (197)
T TIGR00138 101 NVEILNGRVEDLGSKQH-EEQFDVITSR-A---LVSLNELLELTLPLLKVGGYFLAY 152 (197)
T ss_pred CCHHEEHHHHHCCCCCC-CCCCCEEEEC-C---CHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 82420011255055453-3357878980-3---102468888663037889789997
No 147
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=98.27 E-value=9.6e-07 Score=63.63 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC---CCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 67997798602335577777664138863278721332222111100000---1122222222222333-4575544674
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK---ENLQDCITFIEANAET-LPFEANSFDA 143 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~---~~~~~~i~~~~~da~~-lp~~d~sfD~ 143 (265)
.+.+.+||=+|.|.|..+.+++++ +.-.+|+.+||-+.+++.|++-... .-..++++.+.+|+.+ +.-..+.||+
T Consensus 73 ~~~pk~VLIiGGGDG~~~rEvlk~-~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDv 151 (240)
T pfam01564 73 HPNPKKVLIIGGGDGGALREVVKH-PSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDV 151 (240)
T ss_pred CCCCCEEEEECCCCHHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCE
T ss_conf 888553676458657999998567-9953899975788999999998798524347985599981689999857254458
Q ss_pred CEEEEEECCCHH---------HHHHHCCCCHHCCCCCEEEEE
Q ss_conf 036642013213---------443201210004852117763
Q gi|254780624|r 144 CTLAFGIRNMPH---------ITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 144 V~~sf~l~~~~d---------~~~~l~e~~RvLKpGG~~~i~ 176 (265)
|++-. +| -...++.+.|+|+|||.++..
T Consensus 152 II~D~-----~DP~~~~~~Lfs~eFy~~~~~~L~~~Gi~v~Q 188 (240)
T pfam01564 152 IIVDS-----TDPVGPAENLFSKEFYDLLKRALKEDGVFVTQ 188 (240)
T ss_pred EEEEC-----CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99958-----99765334442299999999865999789992
No 148
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=98.27 E-value=8.1e-07 Score=64.10 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=55.9
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
+.+++.+.+..+ .|||+=||+|.++..+|+... +|+|+++++++++.|++.+...++ .|++|+.++++++
T Consensus 188 ~~a~~~~~~~~~---~vlDlYcG~Gtfsl~lA~~~~---~V~GvE~~~~AV~~A~~Na~~N~i-~Nv~f~~~~~~~~ 257 (353)
T pfam05958 188 EWACEVTQGSKG---DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHCCCC---CEEEEECCCCHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCHHHH
T ss_conf 999998626899---589984688888899986478---799996259999999998998699-8649997289999
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.26 E-value=1e-06 Score=63.41 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=80.7
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC
Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333-45
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP 135 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp 135 (265)
|+.+...|.+.. ++.++||+-||||.+.++.+-+.- .+|+.||.+...++..++.+...+. .+++.+++|+.. |.
T Consensus 40 REalFn~L~~~i-~~~~vLDLFAGSGalGlEALSRGA--~~v~fVE~~~~~~~~i~~N~~~l~~-~~~~ii~~da~~~L~ 115 (198)
T PRK10909 40 RETLFNWLAPVI-VDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVSQQLIKNLATLKA-GNARVVNTNALSFLA 115 (198)
T ss_pred HHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEEHHHHHHHH
T ss_conf 999998757642-998799827774688999998799--7899997899999999999998488-867999556999862
Q ss_pred CCCCCCCCCEEE--EEECCCHHHHHHHCCC--CHHCCCCCEEEEEECC
Q ss_conf 755446740366--4201321344320121--0004852117763055
Q gi|254780624|r 136 FEANSFDACTLA--FGIRNMPHITLVLQEI--YRILKCGGRLLVLEFS 179 (265)
Q Consensus 136 ~~d~sfD~V~~s--f~l~~~~d~~~~l~e~--~RvLKpGG~~~i~df~ 179 (265)
-....||+|++- |... .....++.+ ...|+|+|.+++ |..
T Consensus 116 ~~~~~fDlIF~DPPY~~~---~~~~~l~~l~~~~~L~~~gliii-E~~ 159 (198)
T PRK10909 116 QPGTPHNVVFVDPPFRKG---LLEETINLLEQNGWLADDALIYV-ESE 159 (198)
T ss_pred CCCCCEEEEEECCCCCCC---HHHHHHHHHHHCCCCCCCCEEEE-EEC
T ss_conf 559952189989997655---59999999998889189969999-954
No 150
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.20 E-value=2.3e-05 Score=54.70 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=96.1
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCCHHCCCC-CCCCCCCCCCCCC----CCCCCC
Q ss_conf 67997798602335577777664138---863278721332222111100000112-2222222222333----457554
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASD---NRSQIVVADINNEMLSVGRDRAFKENL-QDCITFIEANAET----LPFEAN 139 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~---~~~~v~giD~s~~Ml~~a~~r~~~~~~-~~~i~~~~~da~~----lp~~d~ 139 (265)
.+.+..|+|+|||.+.=+..+.+... .....+.+|||.++|+.+-..+..... .-.|.-++||.++ ++.++.
T Consensus 74 i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCC
T ss_conf 58997699746887245899999998549974288651769999999987424048975588887537876542057544
Q ss_pred -CCCCCEEEE--EECCCHH--HHHHHCCCCH-HCCCCCEEEE-EECCCCCCCHHHHHH-------HHHHHCHHHHHHHHH
Q ss_conf -467403664--2013213--4432012100-0485211776-305544551011234-------565311133210254
Q gi|254780624|r 140 -SFDACTLAF--GIRNMPH--ITLVLQEIYR-ILKCGGRLLV-LEFSEVQGPVFKKIY-------DMWSFKVIPQLGRFI 205 (265)
Q Consensus 140 -sfD~V~~sf--~l~~~~d--~~~~l~e~~R-vLKpGG~~~i-~df~~p~~~~~~~~~-------~~y~~~iiP~~g~~~ 205 (265)
+--.+.+-. .+-|++. -...|+++.| .|+||+.++| +|..+.. ..+...| ..|..+++-.+-+.+
T Consensus 154 ~~~~~l~~flGStIGNf~~~eA~~fL~~~~~~~l~~~d~lLiG~Dl~Kd~-~~l~~AYnD~~GvTa~FnlN~L~riNr~L 232 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDP-DKVLRAYNDPGGVTRRFVLNGLVHANEIL 232 (319)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 67875999616544678979999999999997259887589656677798-99897630885410999985999999984
Q ss_pred CCC---HHHHHHHH--HH----HHH-----------------------------CCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 288---76865789--99----996-----------------------------89989999999975995379998
Q gi|254780624|r 206 AGD---EEPYQYLI--ES----IRR-----------------------------FPNQQDFAAVISAAGFSNVSFTN 244 (265)
Q Consensus 206 ~~~---~~~Y~yL~--~S----i~~-----------------------------f~~~~el~~~l~~aGF~~v~~~~ 244 (265)
..+ .+.|+|.. +. |+. =++.+++..+++++||+..++..
T Consensus 233 g~d~F~~~~f~h~a~yn~~~~riem~L~s~~~v~i~~~~~~f~~GE~I~tE~S~Kyt~~~~~~l~~~aG~~~~~~W~ 309 (319)
T TIGR03439 233 GSEAFREEDWEFLGEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVWT 309 (319)
T ss_pred CCCCCCHHHCEEEEEECCCCCCCHHEEECCCEEEECCCCEEECCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 73457653067999984775813112770654897057279779998999975188999999999987990468896
No 151
>KOG3420 consensus
Probab=98.18 E-value=5.3e-07 Score=65.30 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL 146 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~ 146 (265)
++.+++|+|||+|.++...+ ++....|+|+||.++.|++++.++.+... +++++++|..++.+....||.+++
T Consensus 48 Egkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420 48 EGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred CCCCHHHHCCCHHHHHHHHH--CCCCCEEEEEECCHHHHHHHHHCHHHHHH--HHHEEEEECCCHHCCCCEEEEEEE
T ss_conf 47462252476115677750--57873378640588999998616687523--342122221551105876766786
No 152
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.17 E-value=5.1e-06 Score=58.94 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=77.4
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
+...+|++||..|.....|-+.+ |..++.|++|++..++.+++++ +..+..++.+.+ ++++.+||+|.+.-+
T Consensus 43 ~ikSilE~GcNIGlNL~ALk~L~-P~~~l~gIEIN~~A~~~lk~~~------~~~~i~n~SIld-~~~~~~~DLv~t~GV 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHC------CCCEEEECCCCC-CCCCCCEEEEEEEEE
T ss_conf 88826896688477699998748-7440499953999999998658------972699653346-677874238998308
Q ss_pred ECCC--HHHHHHHCCCCHHCCCCCEEEEEECCCCC
Q ss_conf 0132--13443201210004852117763055445
Q gi|254780624|r 150 IRNM--PHITLVLQEIYRILKCGGRLLVLEFSEVQ 182 (265)
Q Consensus 150 l~~~--~d~~~~l~e~~RvLKpGG~~~i~df~~p~ 182 (265)
|=|+ .++..+.++++|+-+. .++|.|+..|+
T Consensus 115 LIHinP~~L~~vy~~l~~~s~k--yili~EYynp~ 147 (204)
T TIGR03587 115 LIHINPDNLPTAYRELYRCSNR--YILIAEYYNPS 147 (204)
T ss_pred EEEECHHHHHHHHHHHHHHHCC--EEEEEEECCCC
T ss_conf 9997889999999999985205--59999942899
No 153
>KOG2915 consensus
Probab=98.17 E-value=3.1e-06 Score=60.38 Aligned_cols=113 Identities=21% Similarity=0.269 Sum_probs=92.9
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 9998520644679977986023355777776641388632787213322221111000001122222222222333457-
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF- 136 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~- 136 (265)
..++..|...+| .+||+-|+|.|.++..+++...|.++++-.|+-+.--+.|++..++.++..++++.+-|....-|
T Consensus 95 a~I~~~L~i~PG--svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915 95 AMILSMLEIRPG--SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHCCCCC--CEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 999998657999--789863788634889999863767626999832878999999999737786348999641567735
Q ss_pred -CCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCC-EEEEEECC
Q ss_conf -55446740366420132134432012100048521-17763055
Q gi|254780624|r 137 -EANSFDACTLAFGIRNMPHITLVLQEIYRILKCGG-RLLVLEFS 179 (265)
Q Consensus 137 -~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG-~~~i~df~ 179 (265)
++..+|+|.. .+|.|-.++--++.+||-+| +++. ||
T Consensus 173 ~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~cs--FS 210 (314)
T KOG2915 173 IKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCS--FS 210 (314)
T ss_pred CCCCCCCEEEE-----CCCCHHHHHHHHHHHHHHCCCEEEE--CC
T ss_conf 31342356997-----5898055223367775406825996--21
No 154
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=98.17 E-value=1.7e-06 Score=62.08 Aligned_cols=157 Identities=14% Similarity=0.223 Sum_probs=107.5
Q ss_pred HHHHHHHCC-CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC----CCCCCCCCCCCCCCC
Q ss_conf 999852064-467997798602335577777664138863278721332222111100000----112222222222233
Q gi|254780624|r 58 EAMVTNLNP-RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK----ENLQDCITFIEANAE 132 (265)
Q Consensus 58 ~~~i~~l~~-~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~----~~~~~~i~~~~~da~ 132 (265)
..|+.++++ ..+.+.+||=||.|-|-+.+++.++- .--+++-|||-++-++.+|+=+.. .--.++++...+|.-
T Consensus 62 hEMi~HvpL~~H~NPk~VLvIGGGDGG~lREV~KH~-sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~ 140 (284)
T TIGR00417 62 HEMIAHVPLFAHPNPKKVLVIGGGDGGVLREVVKHK-SVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGF 140 (284)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECC-CCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCH
T ss_conf 789987565368988547899638884687887559-8167999972747899988826121056658880358982517
Q ss_pred C-CCCC-----CCCCCCCEEEEEECCCHHH---------HHHHCCCCHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHHC
Q ss_conf 3-4575-----5446740366420132134---------432012100048521177630554-4551011234565311
Q gi|254780624|r 133 T-LPFE-----ANSFDACTLAFGIRNMPHI---------TLVLQEIYRILKCGGRLLVLEFSE-VQGPVFKKIYDMWSFK 196 (265)
Q Consensus 133 ~-lp~~-----d~sfD~V~~sf~l~~~~d~---------~~~l~e~~RvLKpGG~~~i~df~~-p~~~~~~~~~~~y~~~ 196 (265)
+ +.-- .++||+|.. = .+|| ...++-+.+.|+|+|.++. + .+++|++.-+
T Consensus 141 ~fl~~~Gasdv~~~fDVIIv-D----stDPvGPa~~LF~~~Fy~~~~~aL~~~Gv~v~----Qss~s~~~~~~~------ 205 (284)
T TIGR00417 141 KFLRDTGASDVEKKFDVIIV-D----STDPVGPAETLFTKEFYELLKKALNEDGVIVA----QSSESPWLQLEL------ 205 (284)
T ss_pred HHHHHCCCCCCCCCCCEEEE-E----CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE----ECCCCCCCCHHH------
T ss_conf 98976152222121447997-2----77895655410217999999985299988998----027884327488------
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE-----ECCCCEEEEEEEEEE
Q ss_conf 13321025428876865789999968998999999997599537999-----855664999999811
Q gi|254780624|r 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT-----NYTNGVVALHSGWKC 258 (265)
Q Consensus 197 iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~-----~~~~Gi~~i~~g~Kp 258 (265)
-..+.+.++++||.++++. ++..|+-+..+|.|-
T Consensus 206 ----------------------------~~d~~r~~~~~~F~~~~~y~~~iPTYp~G~~~F~~~s~~ 244 (284)
T TIGR00417 206 ----------------------------IKDLKRKVKEVPFPITEYYTAAIPTYPSGLWSFIIASKN 244 (284)
T ss_pred ----------------------------HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCC
T ss_conf ----------------------------887888775268975304664078650235453220242
No 155
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=98.16 E-value=2.3e-06 Score=61.18 Aligned_cols=104 Identities=20% Similarity=0.279 Sum_probs=76.9
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCCCC-CC-C-CCCCCCCCE
Q ss_conf 9977986023355777776641388632787213322221111000001122-222222222333-45-7-554467403
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANAET-LP-F-EANSFDACT 145 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da~~-lp-~-~d~sfD~V~ 145 (265)
++.+|||+-|=||.++...+... -.+|+.+|+|...|+.|+++..-.++. .+++++.+|+.+ +. + ..+.||+|+
T Consensus 123 ~g~rvLn~Fsytg~fsv~A~~~G--A~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~Vi 200 (286)
T pfam10672 123 KGKNVLNLFAYTCGFSVAAIAGG--ASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVI 200 (286)
T ss_pred CCCCEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEE
T ss_conf 89832531147869999987679--8779999198899999999999769995436999830999999986179998799
Q ss_pred E---EEEECC---CHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 6---642013---21344320121000485211776
Q gi|254780624|r 146 L---AFGIRN---MPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 146 ~---sf~l~~---~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
+ +|.=.. ..+..+.++.+.++|+|||.++.
T Consensus 201 lDPPsf~k~~~~~~~~Y~~l~~~a~~ll~~gG~L~~ 236 (286)
T pfam10672 201 IDPPSFQKGSFALTKDYKKILRRLPELLVEGGTVLA 236 (286)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 879998887247887899999999986089968999
No 156
>KOG0820 consensus
Probab=98.16 E-value=2.2e-06 Score=61.34 Aligned_cols=91 Identities=20% Similarity=0.365 Sum_probs=71.2
Q ss_pred HCCCHHHHH----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 148017999----9998520644679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 49 SLGLHRFWK----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 49 S~G~~r~Wr----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
++|+|..=+ ..+++....+++ ..||++|-|||.++..+.+.. ++|+++++-+.|+..-.+|.+........
T Consensus 35 d~GQHilkNp~v~~~I~~ka~~k~t--D~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kL 109 (315)
T KOG0820 35 DFGQHILKNPLVIDQIVEKADLKPT--DVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKL 109 (315)
T ss_pred CCCHHHHCCHHHHHHHHHCCCCCCC--CEEEEECCCCCHHHHHHHHHC---CEEEEEECCCHHHHHHHHHHCCCCCCCEE
T ss_conf 3014555477889999860478998--779995798778999999720---84899940807899999986699865604
Q ss_pred CCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 2222223334575544674036
Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTL 146 (265)
Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~ 146 (265)
..++||..+.+++ .||.+++
T Consensus 110 qV~~gD~lK~d~P--~fd~cVs 129 (315)
T KOG0820 110 QVLHGDFLKTDLP--RFDGCVS 129 (315)
T ss_pred EEEECCCCCCCCC--CCCEEEC
T ss_conf 6885031257885--1031122
No 157
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.16 E-value=3.1e-06 Score=60.39 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=61.4
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-------CCCCCCCC
Q ss_conf 97798602335577777664138863278721332222111100000112222222222233345-------75544674
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-------FEANSFDA 143 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-------~~d~sfD~ 143 (265)
+..|||+||++|.++..++++. ..++|+|+|+.+. - ..+++.+++||..+.. ...+.||+
T Consensus 22 ~~~vlDLg~aPGgwsq~~~~~~-~~~~v~~vDl~~~-~-----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~Dl 88 (176)
T pfam01728 22 GKTVLDLGAAPGGFSQVLLERG-AKGRVVAVDLGPM-K-----------PIQGVTFLRGDITDPETLEKLLELLPGKVDL 88 (176)
T ss_pred CCEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCCC-C-----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 9999996899976999999856-6873999973446-5-----------6778456516766878999999973998468
Q ss_pred CEEEEE-----ECCCHH------HHHHHCCCCHHCCCCCEEEEE
Q ss_conf 036642-----013213------443201210004852117763
Q gi|254780624|r 144 CTLAFG-----IRNMPH------ITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 144 V~~sf~-----l~~~~d------~~~~l~e~~RvLKpGG~~~i~ 176 (265)
|++--+ .++..+ ...++.=+.++|+|||.+++-
T Consensus 89 V~sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K 132 (176)
T pfam01728 89 VLCDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVK 132 (176)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 97336656567733478999999999999999982437639999
No 158
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.15 E-value=1.4e-06 Score=62.57 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=67.0
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCC-------------------------------C-------EEEEECCCCCCCCCCCC
Q ss_conf 779860233557777766413886-------------------------------3-------27872133222211110
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNR-------------------------------S-------QIVVADINNEMLSVGRD 113 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~-------------------------------~-------~v~giD~s~~Ml~~a~~ 113 (265)
..++|--||+|-+.++.|....+- + .++|+|+.+.|++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf 83416887734799999973445687633220045543213888999999999986514766658987489899999999
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--EEEEC
Q ss_conf 000011222222222223334575544674036--64201
Q gi|254780624|r 114 RAFKENLQDCITFIEANAETLPFEANSFDACTL--AFGIR 151 (265)
Q Consensus 114 r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~--sf~l~ 151 (265)
++.+.|....|+|.++|+..++-+-+++|+|+| -||.|
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR 312 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER 312 (381)
T ss_pred HHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEECCCCHHH
T ss_conf 8997698832899974432166876669989958983011
No 159
>PRK01581 speE spermidine synthase; Validated
Probab=98.15 E-value=2.8e-06 Score=60.68 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=83.4
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--HHCCC----C
Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100--00011----2
Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR--AFKEN----L 120 (265)
Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r--~~~~~----~ 120 (265)
|.|..-+|. .+.+|.-.-...+...+||=+|.|-|..+.++.+. ++..+|+-+|+-++|++.|+.. +.+.+ .
T Consensus 117 FSS~DEyRY-HEaLVHPaMa~~~~~~rVLILGGGDGLAlREVLKy-p~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~ 194 (363)
T PRK01581 117 FSSVDEQIY-HEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFF 194 (363)
T ss_pred CCCHHHHHH-HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCC
T ss_conf 040067677-77653266531788773899807643999998717-9856278995699999987519799875120014
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCEEEEEECCCHHHHH----------HHCCCCHHCCCCCEEEEEE
Q ss_conf 2222222222333-4575544674036642013213443----------2012100048521177630
Q gi|254780624|r 121 QDCITFIEANAET-LPFEANSFDACTLAFGIRNMPHITL----------VLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 121 ~~~i~~~~~da~~-lp~~d~sfD~V~~sf~l~~~~d~~~----------~l~e~~RvLKpGG~~~i~d 177 (265)
.++|+.+.+||-. |.-..+.||+|++- +|||.. ..+-+.++|.|+|.+++--
T Consensus 195 DPRV~Vvn~DAf~wL~~~~~~FDvIIVD-----lPDP~n~~L~KLYS~eFY~Ll~~~La~dG~~vVQS 257 (363)
T PRK01581 195 DNRVNTHVCDAKEFLSSPSSLYDVIIID-----FPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 257 (363)
T ss_pred CCCEEEEECCHHHHHHCCCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9804999210899986167544289995-----89998624666735999999998619885399960
No 160
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=98.15 E-value=1.3e-06 Score=62.78 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=61.7
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC--
Q ss_conf 998520644679977986023355777776641388632787213322221111000001122222222222333-45--
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP-- 135 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp-- 135 (265)
.+++.+.+.. +.+|||+=||.|.++..|+++. .+|+|+|.++..++.|++.+...++ .|++|+++|+++ ++
T Consensus 285 ~a~~~l~~~~--~~~VlDLYcGvGtfsl~LA~~~---~~V~gvE~~~~av~~A~~Na~~n~i-~n~~f~~~d~~~~l~~~ 358 (440)
T PRK13168 285 RALEWLDPQP--GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVPAMVERARENARRNGL-DNVTFYHANLFEDFTDQ 358 (440)
T ss_pred HHHHHHCCCC--CCEEEEEECCCCCCCHHHHHCC---CEEEEEECCHHHHHHHHHHHHHCCC-CCCEEEECCHHHHHHHH
T ss_conf 9999852678--9889986238562111135306---7688760579999999999997499-98789974645663557
Q ss_pred -CCCCCCCCCE
Q ss_conf -7554467403
Q gi|254780624|r 136 -FEANSFDACT 145 (265)
Q Consensus 136 -~~d~sfD~V~ 145 (265)
...+.||+|+
T Consensus 359 ~~~~~~~D~vi 369 (440)
T PRK13168 359 PWAKGGFDKVL 369 (440)
T ss_pred HHHCCCCCEEE
T ss_conf 86379999899
No 161
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.3e-06 Score=62.88 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=65.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
..+++.++..++ .++||+=||.|.+++.+|++. .+|+|+++++++++.|++.++..+.. |++|+.++++++.-.
T Consensus 283 ~~a~~~~~~~~~--~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~ 356 (432)
T COG2265 283 ETALEWLELAGG--ERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHCCCC--CEEEECCCCCCHHHHHHCCCC---CEEEEEECCHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHH
T ss_conf 999999743699--779993558870135531246---57999964899999999999973988-779995868888651
Q ss_pred C---CCCCCCE
Q ss_conf 5---4467403
Q gi|254780624|r 138 A---NSFDACT 145 (265)
Q Consensus 138 d---~sfD~V~ 145 (265)
- ..+|.|+
T Consensus 357 ~~~~~~~d~Vv 367 (432)
T COG2265 357 WWEGYKPDVVV 367 (432)
T ss_pred HCCCCCCCEEE
T ss_conf 00257999899
No 162
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=98.14 E-value=4.2e-06 Score=59.47 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=81.6
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCC-------CHHCCCC-CCCCCCCC
Q ss_conf 9998520644679977986023355777776641388632-7872133222211110-------0000112-22222222
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRD-------RAFKENL-QDCITFIE 128 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~-------r~~~~~~-~~~i~~~~ 128 (265)
.++++.+...+. ...+|+|||-|.+....|-..+ ++ .+||++.+.--+.|+. ++.-.|. ...+++++
T Consensus 32 s~ii~~~~l~~~--dvF~DLGSGVGnvv~QaAl~tg--c~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~ 107 (205)
T pfam08123 32 SDVLDKCNLGPQ--DVFVDLGSGVGNCVLQAALEFG--CKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIR 107 (205)
T ss_pred HHHHHHHCCCCC--CEEEECCCCCCHHHHHHHHHHC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999998398976--8899858883299999998709--653888886566899999999999999999588768738997
Q ss_pred CCCCCCCCCC---CCCCCCEEE-EEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 2233345755---446740366-4201321344320121000485211776305544
Q gi|254780624|r 129 ANAETLPFEA---NSFDACTLA-FGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 129 ~da~~lp~~d---~sfD~V~~s-f~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
||..+.+.-+ ...|+|.+. |++ =++....|+|+++-||+|-+++.++-..|
T Consensus 108 gdFl~~~~~~~~~~~a~VI~vNN~~F--~~~Ln~~L~e~f~~lk~GtkIVS~k~f~p 162 (205)
T pfam08123 108 GSFLDNERVEEIIPEADVILVNNFAF--DPELNLQLKEMLQDLKDGCKIISLKSFVP 162 (205)
T ss_pred CCCCCCHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 77788588998634798899943246--98899999999972999888997765468
No 163
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.09 E-value=5.5e-06 Score=58.72 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=85.7
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--
Q ss_conf 999985206446799779860233557777766413886327872133222211110000011222222222223334--
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-- 134 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-- 134 (265)
|+.+-+.+.+..-++.++||+-+|+|.+.++.+-+.- .+++.+|.+..-+...+++++..+...+...+.+||...
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~ 107 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107 (187)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHH
T ss_conf 8999987343445798899946876476899985788--56999965989999999999984876125998400899987
Q ss_pred CCCCC-CCCCCEE--EEEECCCHHHHHHHCC--CCHHCCCCCEEEE
Q ss_conf 57554-4674036--6420132134432012--1000485211776
Q gi|254780624|r 135 PFEAN-SFDACTL--AFGIRNMPHITLVLQE--IYRILKCGGRLLV 175 (265)
Q Consensus 135 p~~d~-sfD~V~~--sf~l~~~~d~~~~l~e--~~RvLKpGG~~~i 175 (265)
..... +||+|.. -|. ..+.+++..+.. -...|+|+|.+++
T Consensus 108 ~~~~~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 108 QLGTREPFDLVFLDPPYA-KGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred HCCCCCCCCEEEECCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 227788512899689975-360668999988876587788968999
No 164
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=9.5e-06 Score=57.20 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--------CCCCCC
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345--------755446
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--------FEANSF 141 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--------~~d~sf 141 (265)
++.+|+|+|+-+|.++..++++.++...|+|+|+-|-- ..++|.++++|..+-+ +....+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCC------------CCCCCEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 89879983879984999999973888848999775455------------678946884132484379999987077876
Q ss_pred CCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 7403664-----2013213------44320121000485211776305
Q gi|254780624|r 142 DACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 142 D~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i~df 178 (265)
|+|+|-- |.+.+.+ -..++.=+.++|+|||.+++-.|
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEE
T ss_conf 668725887767872200889999999999999872578983999997
No 165
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.05 E-value=4e-06 Score=59.61 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEE
Q ss_conf 799779860233557777766413886327872133222211110000011222222222223334--575544674036
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--PFEANSFDACTL 146 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--p~~d~sfD~V~~ 146 (265)
.+...+|+||-|.|+.....|...+ ..-.+|+++=.+=+...-..+.+.++ .||....+|+..+ .++++++|.|.+
T Consensus 343 ~k~kv~LEIGFG~Ge~L~~~A~~nP-~~~fIG~Evy~nGva~ll~~i~~~~l-~Niri~~~D~~~ll~~lp~~sld~i~i 420 (503)
T PRK01544 343 EKRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYI 420 (503)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCC-CCCEEEEEECHHHHHHHHHHHHHCCC-CEEEEEHHHHHHHHHHCCCCCCCEEEE
T ss_conf 5670899953698799999999689-88889994065669999999998699-759987335999998566204041678
Q ss_pred EEEECCCHHH-------------HHHHCCCCHHCCCCCEEEE
Q ss_conf 6420132134-------------4320121000485211776
Q gi|254780624|r 147 AFGIRNMPHI-------------TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 147 sf~l~~~~d~-------------~~~l~e~~RvLKpGG~~~i 175 (265)
- +||| ...+..+.++|||||.+.+
T Consensus 421 l-----fPDPWpKkRH~KRRli~~efl~~l~~~Lk~~G~l~~ 457 (503)
T PRK01544 421 L-----FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 457 (503)
T ss_pred E-----CCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 7-----899997553220017799999999997146988999
No 166
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.04 E-value=4.4e-06 Score=59.35 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=62.4
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
++.++.+.+..+ ..||++|+|+|.+|..|+++. .+|+++++-+.+.+..+++... .+|++.+++|+.+++++
T Consensus 3 ~kIv~~a~~~~~--d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~---~~n~~ii~~D~L~~~~~ 74 (169)
T smart00650 3 DKIVRAANLRPG--DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP 74 (169)
T ss_pred HHHHHHHCCCCC--CEEEEECCCHHHHHHHHHHHC---CCCCEEECCHHHHHHHHHHHCC---CCCEEEEECCHHCCCCC
T ss_conf 899886389994--979996897029999999731---6353163788999999986410---79779995711125531
Q ss_pred CCCCCCC
Q ss_conf 5446740
Q gi|254780624|r 138 ANSFDAC 144 (265)
Q Consensus 138 d~sfD~V 144 (265)
+.....|
T Consensus 75 ~~~~~~i 81 (169)
T smart00650 75 KLQPYKV 81 (169)
T ss_pred CCCCCEE
T ss_conf 1587369
No 167
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=98.01 E-value=9.7e-06 Score=57.16 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=59.8
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333457
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF 136 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~ 136 (265)
-+++++.+.+.. +..|||+|.|+|.+|..|++.. .+++++++-+.+++.-+++... .++++.+++|+.+.++
T Consensus 19 ~~kIv~~~~~~~--~d~VlEIGPG~G~LT~~L~~~~---~~v~aiE~D~~l~~~L~~~~~~---~~~~~ii~~D~l~~d~ 90 (258)
T pfam00398 19 INRIVDKANLQE--SDTVLEIGPGKGALTEELAKRA---KQVVAIEIDPRLAKRLQKKLAL---HPNVEVVHQDFLKFSF 90 (258)
T ss_pred HHHHHHHCCCCC--CCEEEEECCCHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHCC---CCCEEEEECCHHCCCC
T ss_conf 999999708999--9979997996239999999616---9479995447799999986442---8977999663010575
Q ss_pred CCC
Q ss_conf 554
Q gi|254780624|r 137 EAN 139 (265)
Q Consensus 137 ~d~ 139 (265)
+..
T Consensus 91 ~~~ 93 (258)
T pfam00398 91 PKH 93 (258)
T ss_pred CCC
T ss_conf 457
No 168
>PTZ00146 fibrillarin; Provisional
Probab=98.00 E-value=4.1e-05 Score=53.14 Aligned_cols=149 Identities=11% Similarity=0.189 Sum_probs=92.3
Q ss_pred CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC----CCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-C--CCC
Q ss_conf 467997798602335577777664138863278721332----222111100000112222222222233345-7--554
Q gi|254780624|r 67 RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINN----EMLSVGRDRAFKENLQDCITFIEANAETLP-F--EAN 139 (265)
Q Consensus 67 ~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~----~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~--~d~ 139 (265)
...++++||=+|..+|-....++..+.+.+.|+++++|+ +.+..|++| +||--+..||.... + --.
T Consensus 132 ~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R-------~NIvPIleDAr~P~kYr~lV~ 204 (296)
T PTZ00146 132 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRR-------TNIVPIIEDARYPQKYRMLVP 204 (296)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCC-------CCCEEEECCCCCHHHHHHHCC
T ss_conf 4379998998514679865566650178861999970646688999997227-------983357777897467554245
Q ss_pred CCCCCEEEEEECCCHHHHH---HHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 4674036642013213443---2012100048521177630554455101123456531113321025428876865789
Q gi|254780624|r 140 SFDACTLAFGIRNMPHITL---VLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLI 216 (265)
Q Consensus 140 sfD~V~~sf~l~~~~d~~~---~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~ 216 (265)
..|+|.+ .+..+++ ++.++..-|||||.++|.= +...+. .+.++++
T Consensus 205 ~VDvIf~-----DVAQpdQarI~~~Na~~FLK~gG~~~i~I----KArsID-----------------st~~p~~----- 253 (296)
T PTZ00146 205 MVDCIFA-----DVAQPDQARIVALNAQHFLKNGGHFVISI----KANCID-----------------STADPEV----- 253 (296)
T ss_pred CCCEEEE-----CCCCHHHHHHHHHHHHHHHHCCCEEEEEE----ECCCCC-----------------CCCCHHH-----
T ss_conf 5558996-----17876589999999998531698899999----726632-----------------5679899-----
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCEEEEEEC---CCCEEEEEEEEEECC
Q ss_conf 99996899899999999759953799985---566499999981164
Q gi|254780624|r 217 ESIRRFPNQQDFAAVISAAGFSNVSFTNY---TNGVVALHSGWKCEN 260 (265)
Q Consensus 217 ~Si~~f~~~~el~~~l~~aGF~~v~~~~~---~~Gi~~i~~g~Kp~~ 260 (265)
.| .+| .+.|++.+|+.++..+| --+-+.++--+||..
T Consensus 254 ----VF--~~E-v~kL~~~~f~~~e~v~LePy~rdHa~vvg~Yr~~~ 293 (296)
T PTZ00146 254 ----VF--ASE-VQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRVVK 293 (296)
T ss_pred ----HH--HHH-HHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCC
T ss_conf ----99--999-99998728963688704777788289999855776
No 169
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=97.98 E-value=6.9e-06 Score=58.12 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=60.5
Q ss_pred HCCCH----HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 14801----79999998520644679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 49 SLGLH----RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 49 S~G~~----r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
+|||| ..+-+++++.+.+.++ ..||+||+|+|.+|..+++.. .+++++++.+.+++.-+++ +++
T Consensus 16 ~lGQnFL~d~~ii~kIv~~~~~~~~--d~VlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~-------~~~ 83 (267)
T PRK00274 16 SLGQNFLIDENIIDKIVRAADLQPG--DRVLEIGPGLGALTEPLLERA---AKVTAIEIDRDLAPILRET-------DNL 83 (267)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHC---CCEEEEECCHHHHHHHHHC-------CCE
T ss_conf 7782214898999999996089999--907996388888999999626---8058863688999998504-------786
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 22222233345755
Q gi|254780624|r 125 TFIEANAETLPFEA 138 (265)
Q Consensus 125 ~~~~~da~~lp~~d 138 (265)
+++++|+.+.++++
T Consensus 84 ~ii~~D~L~~~~~~ 97 (267)
T PRK00274 84 TIIEGDALKVDLEE 97 (267)
T ss_pred EEEECHHHHCCHHH
T ss_conf 99965066478677
No 170
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=97.98 E-value=1.1e-05 Score=56.69 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=75.2
Q ss_pred HHHHHHHHCCC-CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--
Q ss_conf 99998520644-679977986023355777776641388632787213322221111000001122222222222333--
Q gi|254780624|r 57 KEAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-- 133 (265)
Q Consensus 57 r~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-- 133 (265)
|+.+...|... .-++.++||+-||||.++++..-+.- .+|+.||.+...++..++.+...+....+ ++..++..
T Consensus 29 rEalFniL~~~~~i~~~~~LDLFaGSGslglEAlSRGA--~~v~fvE~~~~a~~~i~~N~~~l~~~~~~-~~~~~~~~~~ 105 (181)
T pfam03602 29 REALFNILAPYFELGGARVLDLFAGSGALGLEALSRGA--SSVVFVEKDKKAVATLKENLEALGLEGAV-LRMDAARALL 105 (181)
T ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHHCCCCEE-EECCHHHHHH
T ss_conf 99999750134554898799827872698999997699--88999969999999999999985899779-9810899998
Q ss_pred -CCCCCCCCCCCEE--EEEECCCHHHHHHHCCC--CHHCCCCCEEEE
Q ss_conf -4575544674036--64201321344320121--000485211776
Q gi|254780624|r 134 -LPFEANSFDACTL--AFGIRNMPHITLVLQEI--YRILKCGGRLLV 175 (265)
Q Consensus 134 -lp~~d~sfD~V~~--sf~l~~~~d~~~~l~e~--~RvLKpGG~~~i 175 (265)
++-....||+|.+ -|.. ...+..+..+ ...|+++|.+++
T Consensus 106 ~~~~~~~~fdiIF~DPPY~~---~~~~~~l~~l~~~~~l~~~~iiii 149 (181)
T pfam03602 106 RLAGKGPPFDLVFLDPPYAK---GLIEEALELLAEKGWLNPNALIVV 149 (181)
T ss_pred HHCCCCCCCCEEECCCCCCC---HHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 75335788876635997542---069999999996666579809999
No 171
>pfam01269 Fibrillarin Fibrillarin.
Probab=97.96 E-value=7.2e-05 Score=51.53 Aligned_cols=96 Identities=13% Similarity=0.190 Sum_probs=69.7
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC----CCCCCCHHCCCCCCCCCCCCCCCCCCC----CCCC
Q ss_conf 67997798602335577777664138863278721332222----111100000112222222222233345----7554
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML----SVGRDRAFKENLQDCITFIEANAETLP----FEAN 139 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml----~~a~~r~~~~~~~~~i~~~~~da~~lp----~~d~ 139 (265)
..++.+||=+|.++|-....++...++.+.|+++|+|+-+. ..|++ .+||--+.+||.... +- +
T Consensus 71 i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~-------R~NIvPIl~DAr~P~~Y~~lv-~ 142 (229)
T pfam01269 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKK-------RPNIVPILEDARHPQKYRMLV-E 142 (229)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC-------CCCCEEEECCCCCHHHHHHHC-C
T ss_conf 58998799944777985767887228895399997173557899999742-------799445766778756765425-5
Q ss_pred CCCCCEEEEEECCCHHHH---HHHCCCCHHCCCCCEEEEE
Q ss_conf 467403664201321344---3201210004852117763
Q gi|254780624|r 140 SFDACTLAFGIRNMPHIT---LVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 140 sfD~V~~sf~l~~~~d~~---~~l~e~~RvLKpGG~~~i~ 176 (265)
..|.|.+ .+..++ -++.++..-|||||.+++.
T Consensus 143 ~VD~ifq-----DvaQ~~Qa~i~~~Na~~FLk~gG~~~l~ 177 (229)
T pfam01269 143 MVDVIFA-----DVAQPDQARILALNAKYFLKNGGYFMIS 177 (229)
T ss_pred CCCEEEE-----CCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6668996-----2787778999999999861269889999
No 172
>KOG3191 consensus
Probab=97.95 E-value=0.00013 Score=49.85 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 99999999876342115766761480179999998520644679977986023355777776641388632787213322
Q gi|254780624|r 27 QNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNE 106 (265)
Q Consensus 27 ~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~ 106 (265)
...++.+|+. .|.=..|-+-+ +|-. ++-...|.... ..-+|++|||+|.++..+++...+++...+.|+++.
T Consensus 8 ~~~~~~~f~d---VYEPaEDTFlL-lDaL--ekd~~eL~~~~--~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~ 79 (209)
T KOG3191 8 IHLIRLDFSD---VYEPAEDTFLL-LDAL--EKDAAELKGHN--PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE 79 (209)
T ss_pred HHHHHHHHHH---CCCCCCHHHHH-HHHH--HHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHH
T ss_conf 5565566651---34764105389-9999--99999986148--605899348846599999974177716999549989
Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH--HCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf 22111100000112222222222233345755446740366420132134432--0121000485211776305544551
Q gi|254780624|r 107 MLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLV--LQEIYRILKCGGRLLVLEFSEVQGP 184 (265)
Q Consensus 107 Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~--l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265)
.++..++-+...+ -+++.++.|... .+..++.|++. |-=-.++..+.- .+.+.-.. -||+-.
T Consensus 80 A~~~Tl~TA~~n~--~~~~~V~tdl~~-~l~~~~VDvLv--fNPPYVpt~~~~i~~~~i~~a~-aGG~~G---------- 143 (209)
T KOG3191 80 ALEATLETARCNR--VHIDVVRTDLLS-GLRNESVDVLV--FNPPYVPTSDEEIGDEGIASAW-AGGKDG---------- 143 (209)
T ss_pred HHHHHHHHHHHCC--CCCCEEEHHHHH-HHCCCCCCEEE--ECCCCCCCCCCCCHHHHHHHHH-HCCCCH----------
T ss_conf 9988799998557--752056525776-63327730899--7899676985442067788887-457541----------
Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE-EEECCC-CEEEEEEEEE
Q ss_conf 011234565311133210254288768657899999689989999999975995379-998556-6499999981
Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS-FTNYTN-GVVALHSGWK 257 (265)
Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~-~~~~~~-Gi~~i~~g~K 257 (265)
..-..+++|.+-.+.+.+.-. ||.-.-. ..++|+.++|+.-||.... .+...+ -..+|+..++
T Consensus 144 ------r~v~d~ll~~v~~iLSp~Gv~--Ylv~~~~--N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191 144 ------REVTDRLLPQVPDILSPRGVF--YLVALRA--NKPKEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred ------HHHHHHHHHHHHHHCCCCCEE--EEEEHHH--CCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEE
T ss_conf ------789998876404442867437--7630130--5979999987433653068888744774278999985
No 173
>KOG2187 consensus
Probab=97.94 E-value=3.9e-06 Score=59.68 Aligned_cols=61 Identities=26% Similarity=0.421 Sum_probs=52.8
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
.+..+||++||||.+.+.+++.. .+|+|+++++..++-|+..++..+. .|.+|++|-||++
T Consensus 383 ~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187 383 ADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred CCCEEEEEEECCCCEEHHHHCCC---CCEEEEECCHHHCCHHHHCCHHCCC-CCCEEEECCHHHC
T ss_conf 88479986306884000010266---6121023384544435540011586-5402430642001
No 174
>PRK04266 fibrillarin; Provisional
Probab=97.90 E-value=4.4e-05 Score=52.93 Aligned_cols=136 Identities=13% Similarity=0.192 Sum_probs=85.6
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC----CCCCCCCCC
Q ss_conf 6799779860233557777766413886327872133222211110000011222222222223334----575544674
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL----PFEANSFDA 143 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l----p~~d~sfD~ 143 (265)
..++.+||=+|+++|-....++...+ .+.|+++|+|+.+.+.--. + ....+||--+.+||... ++- +..|.
T Consensus 70 i~~gskVLYLGAasGTTVSHvsDiV~-~G~VyAVE~spr~~RdL~~-l--a~~R~NivPIl~DAr~P~~Y~~~v-~~VD~ 144 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGRVYAVEFAPRVMRELLL-V--AEERKNIIPILGDARKPEEYAHLV-EKVDV 144 (226)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCC-CCEEEEEEECCHHHHHHHH-H--HHHCCCCEEEECCCCCHHHHHHHC-CCCCE
T ss_conf 58998799954777984888987517-9649999827077899999-9--850899625754678845644205-65658
Q ss_pred CEEEEEECCCHHHH---HHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 03664201321344---320121000485211776305544551011234565311133210254288768657899999
Q gi|254780624|r 144 CTLAFGIRNMPHIT---LVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIR 220 (265)
Q Consensus 144 V~~sf~l~~~~d~~---~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~ 220 (265)
|.+ .+..++ -++.++.+-|||||.+++.= +-..+. .+.+++.
T Consensus 145 i~q-----DvAQ~dQa~I~~~Na~~FLk~gG~~~l~i----KA~Sid-----------------~t~~p~~--------- 189 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAADNADIFLKPGGYLMLAI----KARSID-----------------VTKDPKE--------- 189 (226)
T ss_pred EEE-----ECCCHHHHHHHHHHHHHHHHCCCEEEEEE----EEEEEE-----------------CCCCHHH---------
T ss_conf 996-----06774289999999998601598899999----742356-----------------4689899---------
Q ss_pred HCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 68998999999997599537999855
Q gi|254780624|r 221 RFPNQQDFAAVISAAGFSNVSFTNYT 246 (265)
Q Consensus 221 ~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265)
.| .+-.+.|++.||+-++..++.
T Consensus 190 vf---~~~~~~L~~~~~~~~e~i~L~ 212 (226)
T PRK04266 190 IF---KEEIKKLEEGGFEILEVVDLE 212 (226)
T ss_pred HH---HHHHHHHHHCCCCEEEEEECC
T ss_conf 99---999999987699668998157
No 175
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=97.88 E-value=1.5e-05 Score=55.88 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=92.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC-CCCCCCCCCCCCCCC
Q ss_conf 9999998520644679977986023355777776641388632787213322221111000001-122222222222333
Q gi|254780624|r 55 FWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCITFIEANAET 133 (265)
Q Consensus 55 ~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~-~~~~~i~~~~~da~~ 133 (265)
.|-..++.......+.+.++||||||.--+--.|..+. .+.+.+|.|+.+.-++.|++.+... ++...|+.+...-..
T Consensus 50 h~l~DLL~~~~~~~~~~v~gLDIGtGAscIYPLLg~~~-y~W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~ 128 (254)
T pfam05971 50 HWVADLLGHQDSDIPTLRRALDIGTGANCIYPLLGVTE-YGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQPQST 128 (254)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEECCCCC
T ss_conf 99999975427887777467773366415777540400-48637976279899999999998583323116999637811
Q ss_pred -----CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCC---C----CCEEEEEECCCCCC--CHHHHHHH---HHHHC
Q ss_conf -----45755446740366420132134432012100048---5----21177630554455--10112345---65311
Q gi|254780624|r 134 -----LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILK---C----GGRLLVLEFSEVQG--PVFKKIYD---MWSFK 196 (265)
Q Consensus 134 -----lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLK---p----GG~~~i~df~~p~~--~~~~~~~~---~y~~~ 196 (265)
+--+++.||+.+|-==+ +.+.+.+.+...|-++ | ||.-. |+-.+.. .+++.+.. .|...
T Consensus 129 ~if~gii~~~e~fdftmCNPPF--~~S~~ea~~~~~rk~~~~~p~~~f~G~~~--El~~~GGE~~Fi~rMI~ES~~~~~~ 204 (254)
T pfam05971 129 LIFNGLIGENERYDFTLCNPPF--HASLAEAKGGSSRKPGRPPPSLNFGGQIA--ELWCEGGEAAFIKKMIEESLQFAKQ 204 (254)
T ss_pred CCCCCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCC--EEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 0223446876606663037986--67888887776446678997303567530--6674684599999999999986447
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE-EEEEEEE
Q ss_conf 13321025428876865789999968998999999997599537999855664-9999998
Q gi|254780624|r 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV-VALHSGW 256 (265)
Q Consensus 197 iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi-~~i~~g~ 256 (265)
+ -+...++++. -+-..+.+.|++.|=.++++..+.-|- .+=.+||
T Consensus 205 v-~WfTsmvgKk--------------s~l~~l~~~L~~~~~~~~~~~em~QG~k~rw~vAW 250 (254)
T pfam05971 205 V-RWFTTLVSKG--------------CNLPPLKEELRILGAPKVTVTEMAQGQKQSRFIAW 250 (254)
T ss_pred C-EEECCCCCCC--------------CCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEE
T ss_conf 5-7983136662--------------14999999999769977999983279851499997
No 176
>KOG3987 consensus
Probab=97.86 E-value=2.8e-06 Score=60.68 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 79977986023355777776641388632787213322221111000001122222222222333457554467403664
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265)
.++.++||+|.|.|+++..++..+ .+|++.++|..|...-+++- .+.-.-+++.+. |-.||+|+|--
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~--ynVl~~~ew~~t--------~~k~dli~clN 177 (288)
T KOG3987 111 QEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKN--YNVLTEIEWLQT--------DVKLDLILCLN 177 (288)
T ss_pred CCCEEEEECCCCCCCHHHHHCCHH---HHHHHHHHHHHHHHHHHHCC--CCEEEEHHHHHC--------CCEEEHHHHHH
T ss_conf 987068861678861001214218---99999876699999986527--736650033313--------72231588877
Q ss_pred EECCCHHHHHHHCCCCHHCCC-CCEEEE
Q ss_conf 201321344320121000485-211776
Q gi|254780624|r 149 GIRNMPHITLVLQEIYRILKC-GGRLLV 175 (265)
Q Consensus 149 ~l~~~~d~~~~l~e~~RvLKp-GG~~~i 175 (265)
.|.-.-++-+.|+.++-||.| .|++++
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 8875067677999999984647884899
No 177
>KOG1122 consensus
Probab=97.80 E-value=1e-05 Score=57.06 Aligned_cols=112 Identities=23% Similarity=0.405 Sum_probs=81.1
Q ss_pred HHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC---CCC
Q ss_conf 52064467997798602335577777664138863278721332222111100000112222222222233345---755
Q gi|254780624|r 62 TNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP---FEA 138 (265)
Q Consensus 62 ~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp---~~d 138 (265)
..+.|+++ .||||+|+-+|-=+..+|..+++.+.|++.|-+.+-++.-+..+.+.|... ......|+..+| |+.
T Consensus 235 ~aL~Pq~g--ERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~ 311 (460)
T KOG1122 235 MALDPQPG--ERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPG 311 (460)
T ss_pred EECCCCCC--CEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCC
T ss_conf 52079988--711212107995077899987277469961354377999998899748774-489736763255333676
Q ss_pred CCCCCCE----EE-EEE----------C------CCHHH-HHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 4467403----66-420----------1------32134-432012100048521177630554
Q gi|254780624|r 139 NSFDACT----LA-FGI----------R------NMPHI-TLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 139 ~sfD~V~----~s-f~l----------~------~~~d~-~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
+||.|. || -|+ + .++.+ .+.|-.+...+||||.++ +|+
T Consensus 312 -~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV---YST 371 (460)
T KOG1122 312 -SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV---YST 371 (460)
T ss_pred -CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEE
T ss_conf -423145348777775554551013301299998727999999999873115770899---985
No 178
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.77 E-value=0.00014 Score=49.74 Aligned_cols=123 Identities=21% Similarity=0.307 Sum_probs=80.0
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEE
Q ss_conf 977986023355777776641388632787213322221111000001122222222222333457---55446740366
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF---EANSFDACTLA 147 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~---~d~sfD~V~~s 147 (265)
..++|||||=.-..+ .+. . .--.|+.||+.+.- +.| .+.|..+.|+ +++.||+|++|
T Consensus 53 ~lr~LEVGALst~N~--~S~-~-~~~dv~rIDLnSq~--------------p~I--~qqDFmerPlP~~e~e~F~iISlS 112 (220)
T pfam11968 53 KLRALEVGALSTKNA--CSK-S-GLFDVTRIDLNSQE--------------PGI--LQQDFMERPLPKDESEKFDIISLS 112 (220)
T ss_pred CCEEEEECCCCCCCH--HCC-C-CEEEEEEEECCCCC--------------CCC--HHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 631775545564212--225-6-74777885258999--------------871--443244077888831141358887
Q ss_pred EEECCCHHH---HHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 420132134---43201210004852117763055445510112345653111332102542887686578999996899
Q gi|254780624|r 148 FGIRNMPHI---TLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPN 224 (265)
Q Consensus 148 f~l~~~~d~---~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~ 224 (265)
.+|-.||++ -..|+-+.+.|+|+|.-. .-|++.++|.- . + .+ .++.+
T Consensus 113 LVLNfVP~~~~RGeML~r~~~fL~~~~~~~----------------~~~lFlVLPlp-C-v-~N-----------SRY~~ 162 (220)
T pfam11968 113 LVLNFVPDPADRGEMLKRTTKFLRPPGPGS----------------PPSLFLVLPLP-C-V-TN-----------SRYMD 162 (220)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCCCC----------------CCEEEEEEEHH-H-H-HC-----------CCCCC
T ss_conf 777416987888699999999717997666----------------63268873245-6-4-04-----------40019
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 8999999997599537999
Q gi|254780624|r 225 QQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 225 ~~el~~~l~~aGF~~v~~~ 243 (265)
.+.+.++|..-||..++.+
T Consensus 163 ~~~l~~im~slGf~~~~~k 181 (220)
T pfam11968 163 EERLQAIMSSLGFVLVKSK 181 (220)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999996795588764
No 179
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=97.76 E-value=4.6e-05 Score=52.80 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 1799999985206446799779860233--55777776641388632787213322221111000001122222222222
Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEAN 130 (265)
Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d 130 (265)
.|.|-.++++.|....|- ...||+||| |-..+.++++...+.++|+-+|.-+--+..++.-+.. +......++++|
T Consensus 53 nR~Fl~RaVr~La~e~GI-rQFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DPvvlaHaraLL~~-~~~~~t~~v~aD 130 (268)
T pfam04672 53 NRAFMHRAVRHLAEEAGI-RQFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDPIVLTHARALLTS-TPEGATDYIHAD 130 (268)
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC-CCCCCEEEEECC
T ss_conf 999999999999875495-057760569999997214667329986399988982799999999568-987746999777
Q ss_pred CCCCC--CC----CCCCCC-----CEEEEEECCCHH---HHHHHCCCCHHCCCCCEEEEEECCCCCCCH-HHHHHHHHHH
Q ss_conf 33345--75----544674-----036642013213---443201210004852117763055445510-1123456531
Q gi|254780624|r 131 AETLP--FE----ANSFDA-----CTLAFGIRNMPH---ITLVLQEIYRILKCGGRLLVLEFSEVQGPV-FKKIYDMWSF 195 (265)
Q Consensus 131 a~~lp--~~----d~sfD~-----V~~sf~l~~~~d---~~~~l~e~~RvLKpGG~~~i~df~~p~~~~-~~~~~~~y~~ 195 (265)
..+.. +. .+.+|. +++.-.||+++| +...++.....|-||..++|..++....+. ...+-..|..
T Consensus 131 lrdp~~iL~~p~~~~~lD~~rPValll~~vLh~v~D~~~p~~iv~~l~d~l~pGS~L~ish~t~d~~p~~~~~~~~~~~~ 210 (268)
T pfam04672 131 VRDPEEILEHPEARRTLDFDRPVALSLVAILHFVPDDDDPYGIVRRLMDALPAGSYLVLSHGTSDLNPELVEAVADVYAK 210 (268)
T ss_pred CCCHHHHHCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 77989986598788537878861345334434578610499999999972699765999843588888899999999970
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE
Q ss_conf 1133210254288768657899999689989999999975995379
Q gi|254780624|r 196 KVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265)
Q Consensus 196 ~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265)
.-. ++ .+-+.+|+..++. ||+-++
T Consensus 211 ~~~------------p~--------~~Rs~~ei~~~f~--g~elve 234 (268)
T pfam04672 211 GGN------------PL--------RLRSRAEVARFFD--GLELVE 234 (268)
T ss_pred CCC------------CC--------CCCCHHHHHHHCC--CCCCCC
T ss_conf 799------------86--------4059999999759--984089
No 180
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=97.73 E-value=0.00012 Score=50.02 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=61.0
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 98602335577777664138863278721332222111100000112222222222233345755446740366
Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 74 iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
|.||||--|.+...+.+... -.++++.|+++.-|+.|++.+...++...|++..||..+.=-+.+..|.|+++
T Consensus 1 vADIGtDHayLpi~L~~~g~-~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~e~vd~ivIA 73 (204)
T pfam04816 1 LADIGSDHAYLPIYLVKNNL-ASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEELDLIDVIVIA 73 (204)
T ss_pred CCEECCCCHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCCEEEEE
T ss_conf 97105450899999997799-87799961667499999999997599753899977842205867765779994
No 181
>KOG2352 consensus
Probab=97.72 E-value=5.4e-05 Score=52.35 Aligned_cols=114 Identities=20% Similarity=0.382 Sum_probs=79.8
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345755
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265)
.+...+.+.. .++|-+|||--.++..+.+-.. -.|+.+|+|+--++....+-.+. .+-+.+...|+..+.|+|
T Consensus 40 ~i~~~~~p~~---~~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352 40 SIMKYLSPSD---FKILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFED 112 (482)
T ss_pred HHHHHHCHHH---CEEEEECCCCCHHHHHHHHCCC--CCCEECCCCHHHHHHHHHCCCCC--CCCEEEEEECCHHCCCCC
T ss_conf 8887506545---1147615887799999986587--77422005689999987514567--742488980211035787
Q ss_pred CCCCCCEEEEEECC----------CHHHHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf 44674036642013----------213443201210004852117763055
Q gi|254780624|r 139 NSFDACTLAFGIRN----------MPHITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 139 ~sfD~V~~sf~l~~----------~~d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
+|||+|.-==.+.. .......+.|+.|+|+|||+++.+-+.
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 531488732764001478500234677667776678874269878999861
No 182
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=97.72 E-value=3.5e-05 Score=53.54 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=87.6
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC----
Q ss_conf 6446799779860233557777766413886327872133222211110000011222222222223334575544----
Q gi|254780624|r 65 NPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANS---- 140 (265)
Q Consensus 65 ~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~s---- 140 (265)
.|...++.+|||++.-+|.=|-.|+.++.+.+-|++.|++.+=++.-..++.+.|. -|+..++.|+...|---..
T Consensus 72 ~p~Gn~~~~vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~-~n~~v~~~DgR~f~~~~~~~eif 150 (284)
T TIGR00446 72 EPEGNEKERVLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGV-LNVAVINVDGRKFGAVVLKMEIF 150 (284)
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH-EEEEEEECCCCHHHHHHCCCEEE
T ss_conf 77876888799974088964899999865885189973763410667865556210-03332413763001231443034
Q ss_pred CCCCEE-----EEE--------ECCC--------HHHH-HHHCCCCHHCCC----CCEEEEEECCCC
Q ss_conf 674036-----642--------0132--------1344-320121000485----211776305544
Q gi|254780624|r 141 FDACTL-----AFG--------IRNM--------PHIT-LVLQEIYRILKC----GGRLLVLEFSEV 181 (265)
Q Consensus 141 fD~V~~-----sf~--------l~~~--------~d~~-~~l~e~~RvLKp----GG~~~i~df~~p 181 (265)
||.|+. .-| ++++ +.++ ..+--++..||| ||.++ +|+.
T Consensus 151 FD~iLLDAPCSG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~V---YSTC 214 (284)
T TIGR00446 151 FDRILLDAPCSGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLV---YSTC 214 (284)
T ss_pred EEEEEECCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE---EECC
T ss_conf 321452578798833765723311477245776467679999999875044566688889---8503
No 183
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=5.2e-05 Score=52.48 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=68.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-
Q ss_conf 9999852064467997798602335577777664138863278721332222111100000112222222222233345-
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP- 135 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp- 135 (265)
.+.+++.+.+++. ...+|.--|.|-.+..+++..++.++++|+|--+..++.|+++....+ .++.++++...++.
T Consensus 12 l~E~i~~L~~~~~--giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~ 87 (314)
T COG0275 12 LNEVVELLAPKPD--GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAE 87 (314)
T ss_pred HHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC--CCEEEEECCHHHHHH
T ss_conf 9999985264899--479982377747689999858988708997689899999999853037--848999576878998
Q ss_pred ----CCCCCCCCCEE
Q ss_conf ----75544674036
Q gi|254780624|r 136 ----FEANSFDACTL 146 (265)
Q Consensus 136 ----~~d~sfD~V~~ 146 (265)
..-..+|.|..
T Consensus 88 ~l~~~~i~~vDGiL~ 102 (314)
T COG0275 88 ALKELGIGKVDGILL 102 (314)
T ss_pred HHHHCCCCCEEEEEE
T ss_conf 887638872227999
No 184
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.68 E-value=8.5e-05 Score=51.07 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---------CCCCHH--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 799779860233557777766413886327872133222211---------110000--011222222222223334575
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSV---------GRDRAF--KENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~---------a~~r~~--~~~~~~~i~~~~~da~~lp~~ 137 (265)
.++.|||==+||.+.-..+|+++. .+|+|+|+|+..++. ...... ..-...+|+..+||.-+|+-.
T Consensus 36 ~~~~rVlVPlCGKs~Dm~wLa~~G---~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~~gDfF~L~~~ 112 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLYCGDFFALTAA 112 (218)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCC---CEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCHH
T ss_conf 889869994898677699998489---72699835299999999973898630136760377538827996642027863
Q ss_pred C-CCCCCCEE--EE-EECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 5-44674036--64-2013213443201210004852117763
Q gi|254780624|r 138 A-NSFDACTL--AF-GIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d-~sfD~V~~--sf-~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
. +.||+|.= ++ +| +-+.+.+..+.+.++|+|||+.+++
T Consensus 113 ~~g~~DaIyDRaal~AL-pp~~R~~Y~~~l~~ll~~g~~~LLi 154 (218)
T PRK13255 113 DLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred HCCCCCEEEECCCEECC-CHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 54774889975380128-9899999999999864998748999
No 185
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=97.63 E-value=5.9e-05 Score=52.11 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=103.8
Q ss_pred CCCEEEECCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9977986023355777-7766413886327872133222211110000011-2222222222233345755446740366
Q gi|254780624|r 70 KDYRVLDVAGGTGDVA-FRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN-LQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~-~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~-~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
.+.+|.=||||.=-++ +.+++.......+.++|+++...+.|++-+...+ +.+++.|+.+|+.++..+-..||+|+.+
T Consensus 121 ~p~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~lA 200 (277)
T pfam03059 121 VPSRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVFLA 200 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEEEH
T ss_conf 97448996378861389999885088731433127889999999999865530047289952644444444547689872
Q ss_pred EEEC--CCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCH
Q ss_conf 4201--32134432012100048521177630554455101123456531113321025428876865789999968998
Q gi|254780624|r 148 FGIR--NMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQ 225 (265)
Q Consensus 148 f~l~--~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~ 225 (265)
+|- .-.++++++..+.++++||+.+++- .-..+|.+. | |. .++
T Consensus 201 -ALVGm~~e~K~~I~~hL~k~m~~Ga~l~~R-----sa~GlR~~L--Y-----p~----------------------vd~ 245 (277)
T pfam03059 201 -ALVGMDKEEKAKVIDHLGKHMAPGALLVLR-----SAHGARAFL--Y-----PV----------------------VDP 245 (277)
T ss_pred -HHCCCCHHHHHHHHHHHHHHCCCCCEEEEE-----CCHHHHHHC--C-----CC----------------------CCH
T ss_conf -113543335999999999745899679996-----112178762--8-----87----------------------896
Q ss_pred HHHHHHHHHCCCCEEEEEECCCC-EEEEEEEEEECC
Q ss_conf 99999999759953799985566-499999981164
Q gi|254780624|r 226 QDFAAVISAAGFSNVSFTNYTNG-VVALHSGWKCEN 260 (265)
Q Consensus 226 ~el~~~l~~aGF~~v~~~~~~~G-i~~i~~g~Kp~~ 260 (265)
++ -.||+.+....-+.. +.+++++.|+-+
T Consensus 246 ~~------~~GFe~l~~~hP~~~ViNSvI~~rk~~~ 275 (277)
T pfam03059 246 CD------LRGFEVLSVYHPTDEVINSVIVARKKIV 275 (277)
T ss_pred HH------CCCCEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 67------3870799998899984113899833777
No 186
>KOG1709 consensus
Probab=97.62 E-value=0.00017 Score=49.11 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=80.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHC-CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC
Q ss_conf 157667614801799999985206-4467997798602335577777664138863278721332222111100000112
Q gi|254780624|r 42 DVMNDLMSLGLHRFWKEAMVTNLN-PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120 (265)
Q Consensus 42 D~~N~~~S~G~~r~Wr~~~i~~l~-~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~ 120 (265)
|.+-+..+=|.--.|-+..++.+. ....++.+||.||-|.|.+.-.+.++ ++. +-+-|+..+.-++.-|+-.-.+
T Consensus 72 D~ll~~~~k~VMm~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~-~p~-~H~IiE~hp~V~krmr~~gw~e-- 147 (271)
T KOG1709 72 DTLLDSLGKGVMMRWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEA-PPD-EHWIIEAHPDVLKRMRDWGWRE-- 147 (271)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHC-CCC-CEEEEECCHHHHHHHHHCCCCC--
T ss_conf 677764054355652148999999998617964898423167788888635-986-3178735978999998636654--
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCEE-EEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 2222222222333--4575544674036-64201321344320121000485211776
Q gi|254780624|r 121 QDCITFIEANAET--LPFEANSFDACTL-AFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 121 ~~~i~~~~~da~~--lp~~d~sfD~V~~-sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
..||....|-=|+ -.++|++||.|.- +|+ .+.+|.-...+-+.|+|||+|++..
T Consensus 148 k~nViil~g~WeDvl~~L~d~~FDGI~yDTy~-e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709 148 KENVIILEGRWEDVLNTLPDKHFDGIYYDTYS-ELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred CCCEEEEECCHHHHHCCCCCCCCCEEEEECHH-HHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 45468871346764401445675626751301-6789999999877640087744888
No 187
>KOG2730 consensus
Probab=97.57 E-value=3.2e-05 Score=53.79 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=57.6
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q ss_conf 9779860233557777766413886327872133222211110000011222222222223334----5755446740
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL----PFEANSFDAC 144 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l----p~~d~sfD~V 144 (265)
...|+|..||.|--+...+.+++ .|++||+++.-+..|+.+++-.|...+|+|++||..++ .+....+|+|
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~v 169 (263)
T KOG2730 95 AEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCV 169 (263)
T ss_pred CCHHHHHHHCCCCHHHHHHHHCC---EEEEEECCHHHHHHHHCCCEEECCCCEEEEEECHHHHHHHHHHHHHHEEEEE
T ss_conf 43002545368842889987188---0799852678888776065032577505888330999999886410104566
No 188
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00086 Score=44.60 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=104.2
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCC-CC
Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100000112222-22
Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDC-IT 125 (265)
Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~-i~ 125 (265)
+.|-|-++. ..+++....... +..+||+|+-||-++.-++++.- .+|+|+|..-++|..- +.. .++ +.
T Consensus 59 yVSRG~~KL--~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~k---LR~---d~rV~~ 127 (245)
T COG1189 59 YVSRGGLKL--EKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWK---LRN---DPRVIV 127 (245)
T ss_pred CCCCHHHHH--HHHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHCCC--CEEEEEECCCCCCCHH---HHC---CCCEEE
T ss_conf 626189999--999996486889-97899826787629999987587--4799997037743786---735---984799
Q ss_pred CCCCCCCCCC---CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 2222233345---7554467403664201321344320121000485211776305544551011234565311133210
Q gi|254780624|r 126 FIEANAETLP---FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265)
Q Consensus 126 ~~~~da~~lp---~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265)
+...++..+. +.. .-|.++|--+ |.....+|..+..+++|+|.++.+ -+|+...-+.. ++ -+
T Consensus 128 ~E~tN~r~l~~~~~~~-~~d~~v~DvS---FISL~~iLp~l~~l~~~~~~~v~L--vKPQFEagr~~--------v~-kk 192 (245)
T COG1189 128 LERTNVRYLTPEDFTE-KPDLIVIDVS---FISLKLILPALLLLLKDGGDLVLL--VKPQFEAGREQ--------VG-KK 192 (245)
T ss_pred EECCCHHHCCHHHCCC-CCCEEEEEEE---HHHHHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHH--------CC-CC
T ss_conf 8527831189878176-7784799642---331998889999742788638997--36555540432--------27-68
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE--ECCC---CEEEEEEEEEEC
Q ss_conf 25428876865789999968998999999997599537999--8556---649999998116
Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT--NYTN---GVVALHSGWKCE 259 (265)
Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~--~~~~---Gi~~i~~g~Kp~ 259 (265)
..+ .+++.. .. -.+++.+++.+.||+..... +..+ ++-.+++..|..
T Consensus 193 Gvv-~d~~~~-------~~--v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~l~~~~k~~ 244 (245)
T COG1189 193 GVV-RDPKLH-------AE--VLSKIENFAKELGFQVKGLIKSPIKGGKGNIEFLLLLKKSG 244 (245)
T ss_pred CEE-CCCCHH-------HH--HHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf 634-480158-------99--99999988864595786557267767878675624110368
No 189
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=3e-05 Score=53.98 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 22222222333457554467403664201321--3443201210004852117763055445510112345
Q gi|254780624|r 123 CITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYD 191 (265)
Q Consensus 123 ~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~ 191 (265)
.+++++--....+|.|+|.|+|.+.-.+.|+. +-..+++|++|+|||||.+-| +.|+-...-+.|+
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~Lri---AvPdl~f~~~~Y~ 97 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRI---AVPDLKFLDWLYQ 97 (185)
T ss_pred CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHH
T ss_conf 3213121455445887606789999999887699889999999997086758999---7487520477774
No 190
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00021 Score=48.58 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=87.8
Q ss_pred HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----C-CCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 852064467997798602335577777664138863278721332222111----1-00000112222222222233345
Q gi|254780624|r 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVG----R-DRAFKENLQDCITFIEANAETLP 135 (265)
Q Consensus 61 i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a----~-~r~~~~~~~~~i~~~~~da~~lp 135 (265)
+.....+++ .+|+|+=-|.|+++..++...++++.|++.-+.+.-.=.. + ..+.++....|++.+-.+.-.++
T Consensus 41 L~FaGlkpg--~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGLKPG--ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred EEEECCCCC--CEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 677526899--879998348850744411002875059885643432510140366666664222310455277500458
Q ss_pred CCCCCCCCCEE-E-E---EECCCH--HHHHHHCCCCHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHHCHHHHHHHHHCC
Q ss_conf 75544674036-6-4---201321--34432012100048521177630554-455101123456531113321025428
Q gi|254780624|r 136 FEANSFDACTL-A-F---GIRNMP--HITLVLQEIYRILKCGGRLLVLEFSE-VQGPVFKKIYDMWSFKVIPQLGRFIAG 207 (265)
Q Consensus 136 ~~d~sfD~V~~-s-f---~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~-p~~~~~~~~~~~y~~~iiP~~g~~~~~ 207 (265)
+.+..|++.. + | ..+|+. ...++.+++++.|||||.+++.|-.. |.... .
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------------------~ 176 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------------------S 176 (238)
T ss_pred -CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---------------------C
T ss_conf -997654133211110011045685249999999998538884799874024689880---------------------0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf 8768657899999689989999999975995
Q gi|254780624|r 208 DEEPYQYLIESIRRFPNQQDFAAVISAAGFS 238 (265)
Q Consensus 208 ~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~ 238 (265)
+.. .....++.......+.+||+
T Consensus 177 dt~--------~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 177 DTI--------TLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred HHH--------HHCCCCHHHHHHHHHHHCCE
T ss_conf 224--------43365758999999851325
No 191
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=97.43 E-value=0.00015 Score=49.56 Aligned_cols=106 Identities=22% Similarity=0.290 Sum_probs=79.4
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 446799779860233557777766413886327872133222211110000011222222222223334575-5446740
Q gi|254780624|r 66 PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE-ANSFDAC 144 (265)
Q Consensus 66 ~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~-d~sfD~V 144 (265)
.+..++.+|||.-+|||.-++.+++..+...+|+.-|++++.++..+++++-.+....+...++||..+=.+ .+.||+|
T Consensus 45 ~~~~~~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~~~DAn~lm~~~~~~fD~I 124 (375)
T pfam02005 45 KKLGRGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVI 124 (375)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEE
T ss_conf 30258866975467541999999974699866999559989999999988865998737875475999998558867568
Q ss_pred EE-EEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 36-642013213443201210004852117763
Q gi|254780624|r 145 TL-AFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 145 ~~-sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
=+ .|| .+...|..+.+.+|.||.+.+.
T Consensus 125 DlDPfG-----Sp~pfldsAi~av~~~GlL~vT 152 (375)
T pfam02005 125 DLDPFG-----SPAPFLDSAVQSVKRGGLLCVT 152 (375)
T ss_pred EECCCC-----CCCHHHHHHHHHHCCCCEEEEE
T ss_conf 678999-----9217799999983159889999
No 192
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.40 E-value=0.00012 Score=50.14 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=71.1
Q ss_pred CEEEECCHHHHHHHHHHHH-----------H-C-----------------------------CCCCEEEEECCCCCCCCC
Q ss_conf 7798602335577777664-----------1-3-----------------------------886327872133222211
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAE-----------A-S-----------------------------DNRSQIVVADINNEMLSV 110 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~-----------~-~-----------------------------~~~~~v~giD~s~~Ml~~ 110 (265)
..++|-.||+|-+.++.+- . + ....+++|.|+++.+++.
T Consensus 196 ~pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~~r~~~~~~~~~~~i~G~D~D~~ai~~ 275 (716)
T PRK11783 196 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQERARAGLAECSPKFYGSDIDPRVIQA 275 (716)
T ss_pred CEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
T ss_conf 81344666843789999999847798865454564115688999999999999986542234688718999599899999
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEE--EEEEC--CCHHHHHHHCCCCHHCC---CCCEEEEE
Q ss_conf 11000001122222222222333457554467--4036--64201--32134432012100048---52117763
Q gi|254780624|r 111 GRDRAFKENLQDCITFIEANAETLPFEANSFD--ACTL--AFGIR--NMPHITLVLQEIYRILK---CGGRLLVL 176 (265)
Q Consensus 111 a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD--~V~~--sf~l~--~~~d~~~~l~e~~RvLK---pGG~~~i~ 176 (265)
|+.++.+.|+...|+|.++|+.++.-+....+ +|++ -||-| ..++.....+++-++|| +|-.+.|+
T Consensus 276 Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~~f~GW~~~il 350 (716)
T PRK11783 276 ARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKKQFGGWNAALF 350 (716)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999819988629995678985798777898289967852201366146899999999999965899869999
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=97.39 E-value=0.00017 Score=49.07 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=69.5
Q ss_pred HHHHHHC-CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC---CCCCCCCCCCCCCCCCC
Q ss_conf 9985206-4467997798602335577777664138863278721332222111100000---11222222222223334
Q gi|254780624|r 59 AMVTNLN-PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK---ENLQDCITFIEANAETL 134 (265)
Q Consensus 59 ~~i~~l~-~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~---~~~~~~i~~~~~da~~l 134 (265)
.++.++. ...+.+.+||=||.|-|-++.+++++ + .+|+.++|-+..++.+++-+-. .-..++++.... -+
T Consensus 60 EMl~Hvpl~~Hp~Pk~VLIIGGGDGG~~REvlKH-~--~~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~~~~---~~ 133 (262)
T PRK00536 60 ELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---LL 133 (262)
T ss_pred HHHHCHHHHCCCCCCEEEEECCCCHHHHHHHHCC-C--CEEEEEEECHHHHHHHHHHCHHHHHHHCCCCEEHHHH---HH
T ss_conf 8875302321899787999868755999998728-9--7669999678999999997856565413996113999---87
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 57554467403664201321344320121000485211776
Q gi|254780624|r 135 PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 135 p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
....++||+|.+- + .++....+.++|.|+|||.++.
T Consensus 134 ~~~~~~fDvIIvD-s----l~~~~~~~~l~~~L~~~Gi~v~ 169 (262)
T PRK00536 134 DLDIKKYDLIICL-Q----EPDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred HHCCCCCCEEEEC-C----CCCCCHHHHHHHHHCCCCEEEE
T ss_conf 6154766889988-9----9980549999998589989998
No 194
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=97.37 E-value=7.2e-05 Score=51.54 Aligned_cols=79 Identities=18% Similarity=0.380 Sum_probs=63.2
Q ss_pred EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEECCCH-----------HHHHHHCCC
Q ss_conf 278721332222111100000112222222222233345--7554467403664201321-----------344320121
Q gi|254780624|r 97 QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--FEANSFDACTLAFGIRNMP-----------HITLVLQEI 163 (265)
Q Consensus 97 ~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~~d~sfD~V~~sf~l~~~~-----------d~~~~l~e~ 163 (265)
+|+|+||.++.|+.+++|+.+.+...+|++++.+=+++. .+++.+|+++-.+| .+| ...++|+.+
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLG--YLPggDk~i~T~~~tTi~Al~~a 78 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLG--YLPGGDKSITTKPDTTLEAIKKL 78 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECC--CCCCCCCCCEECCHHHHHHHHHH
T ss_conf 9579960999999999999965987568999779888986376467668999667--68899987587772099999999
Q ss_pred CHHCCCCCEEEEEE
Q ss_conf 00048521177630
Q gi|254780624|r 164 YRILKCGGRLLVLE 177 (265)
Q Consensus 164 ~RvLKpGG~~~i~d 177 (265)
..+|+|||.+.|+-
T Consensus 79 l~lL~~gG~i~i~~ 92 (140)
T pfam06962 79 LELLKPGGLIILVI 92 (140)
T ss_pred HHHHCCCCEEEEEE
T ss_conf 99636698999999
No 195
>pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine.
Probab=97.35 E-value=0.0032 Score=40.90 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCCCEEEECCHHHHHHHHHHHH--------HC-------CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC---
Q ss_conf 67997798602335577777664--------13-------8863278721332222111100000112222222222---
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAE--------AS-------DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA--- 129 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~--------~~-------~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~--- 129 (265)
.++..+|.|+||.+|..++.+.. ++ ++.-+|.--|+-.+=-+.-=+.+.......+--|+.|
T Consensus 14 ~p~~~~IADlGCSsGpNtl~~vs~ii~~i~~~~~~~~~~~~pE~qvf~NDLP~NDFNtlF~sLp~~~~~~~~~f~~gvpG 93 (331)
T pfam03492 14 FPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVFFNDLPSNDFNTLFKLLPPFQKKKRSYFVSGVPG 93 (331)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHCCCCCEEEEECCC
T ss_conf 99855999817999752899999999999999864179999738998678998627888740840113788769996586
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCHHHHHHH-----------------------CCCC----------------HHCCCC
Q ss_conf 2333457554467403664201321344320-----------------------1210----------------004852
Q gi|254780624|r 130 NAETLPFEANSFDACTLAFGIRNMPHITLVL-----------------------QEIY----------------RILKCG 170 (265)
Q Consensus 130 da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l-----------------------~e~~----------------RvLKpG 170 (265)
..-.==||++|.+++.++|+||+++..+..+ .++| +-|+||
T Consensus 94 SFy~RLfP~~Slh~~~Ss~slHWLS~vP~~l~~~~~~~~Nkg~I~i~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~Elv~G 173 (331)
T pfam03492 94 SFYGRLFPRNSLHFVHSSYSLHWLSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSG 173 (331)
T ss_pred CCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 43255578764588753225677640870010678755678856971699889999999999999999999889985468
Q ss_pred CEEEEEECCCCCCCHH----HHHHHHHHHCHHHHHHHHHCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 1177630554455101----123456531113321025428876865--789999968998999999997599537999
Q gi|254780624|r 171 GRLLVLEFSEVQGPVF----KKIYDMWSFKVIPQLGRFIAGDEEPYQ--YLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 171 G~~~i~df~~p~~~~~----~~~~~~y~~~iiP~~g~~~~~~~~~Y~--yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265)
|++++.=+++++.... ..+|+.....+.-++.+-+. +.+.+. ++| .-.|+.+|+....++.|-=.|+.-
T Consensus 174 G~mvl~~~Gr~~~d~~~~~~~~~~~ll~~aL~dlv~eGlI-~eekldsFNiP---~Y~ps~eEv~~~Ie~eGsF~I~~l 248 (331)
T pfam03492 174 GLMVLTFLGRPSVDPSETECGIFWDLLGDALNDLVSEGLI-EEEKLDSFNIP---IYAPSPEEVKEIIEKEGSFTIERL 248 (331)
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CHHHHHHCCCC---CCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 6599996056899866566443999999999999985996-79998324887---607999999999710697565677
No 196
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=97.32 E-value=0.00073 Score=45.07 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=76.6
Q ss_pred CEEEECCHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 77986023355777---776641388632787213322221111000001122222222222333457554467403664
Q gi|254780624|r 72 YRVLDVAGGTGDVA---FRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265)
Q Consensus 72 ~~iLDiGcGTG~~~---~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265)
..|+=+|+|-|-+. +..++..+...+|++|+-+++.+-.-+.|+....+..+|+.+.+|+.+..-+ ..+|++++ -
T Consensus 188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~~p-~k~Di~VS-E 265 (447)
T pfam05185 188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWKGP-EKADILVS-E 265 (447)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCC-CCCCEEEE-E
T ss_conf 699998589648999999999981996699999568779999999850543178069990800057998-77358975-2
Q ss_pred EECCCHHH---HHHHCCCCHHCCCCCEEE
Q ss_conf 20132134---432012100048521177
Q gi|254780624|r 149 GIRNMPHI---TLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 149 ~l~~~~d~---~~~l~e~~RvLKpGG~~~ 174 (265)
.|-.|.|- ..+|.-+-|.|||+|..+
T Consensus 266 LLGSFGDNELSPECLdg~q~~lk~~gIsI 294 (447)
T pfam05185 266 LLGSFGDNELSPECLDGAQRFLKPDGISI 294 (447)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 11666665579778778997468984682
No 197
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=97.28 E-value=0.00025 Score=48.06 Aligned_cols=172 Identities=16% Similarity=0.188 Sum_probs=86.7
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC-CCCCCCCCCCCC-CCC----CCCCCCCC
Q ss_conf 679977986023355777776641388632787213322221111000001-122222222222-333----45755446
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCITFIEAN-AET----LPFEANSF 141 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~-~~~~~i~~~~~d-a~~----lp~~d~sf 141 (265)
.++.-++||||||.--+--.|.-+. .+.+.+|.|+.+.-|+.|++.+... ++...|+..... .+. +--+++.|
T Consensus 115 ~g~~v~gLDIGtGAncIYPLLG~~~-ygW~fvgtDId~~sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~f 193 (326)
T PRK11727 115 KGANVRVLDIGVGANCIYPIIGVQE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 193 (326)
T ss_pred CCCCCEEEECCCCCCEEEEECCCEE-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEE
T ss_conf 8887236750567431121014300-176379961798999999999984820105279996278676532458876657
Q ss_pred CCCEEEEEECCCHHHHHHHCCCCHHCCC------CCEEEEEECCCCCCCH---------HHHHHH---HHHHCHHHHHHH
Q ss_conf 7403664201321344320121000485------2117763055445510---------112345---653111332102
Q gi|254780624|r 142 DACTLAFGIRNMPHITLVLQEIYRILKC------GGRLLVLEFSEVQGPV---------FKKIYD---MWSFKVIPQLGR 203 (265)
Q Consensus 142 D~V~~sf~l~~~~d~~~~l~e~~RvLKp------GG~~~i~df~~p~~~~---------~~~~~~---~y~~~iiP~~g~ 203 (265)
|+.+|-==+ ....+.+.+--.|.++. ...--.+-|+=..+.+ +..+.. .|...+ -+...
T Consensus 194 dftmCNPPF--~~S~eea~~gt~Rk~~nl~~~~~~~~~~~lnfgG~~~EL~c~GGE~~FI~rMI~ES~~~~~~v-~WfTs 270 (326)
T PRK11727 194 DLTLCNPPF--HASAAEARAGSERKLRNLGKNKPKAAKPVLNFGGQNAELWCEGGEVAFIKKMIEESVAFAKQV-LWFTS 270 (326)
T ss_pred EEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCC-EEEEE
T ss_conf 778518987--678999974204544320336788887642457764247846838999999999999873074-89830
Q ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCC-EEEEEEEEE
Q ss_conf 542887686578999996899899999999759953799985566-499999981
Q gi|254780624|r 204 FIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNG-VVALHSGWK 257 (265)
Q Consensus 204 ~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~G-i~~i~~g~K 257 (265)
++++. -+-..+.+.|++.|-.++++..+.-| -.+-++||-
T Consensus 271 lvgKk--------------snL~~l~~~L~~~~~~~~~~~em~QG~k~sR~iAWs 311 (326)
T PRK11727 271 LVSKK--------------ENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAWT 311 (326)
T ss_pred CCCCC--------------CCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 13562--------------039999999997699779999820687102899985
No 198
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.27 E-value=0.00033 Score=47.25 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=74.0
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC----CHHCCC--CCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 9779860233557777766413886327872133222211110----000011--22222222222333-4575544674
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRD----RAFKEN--LQDCITFIEANAET-LPFEANSFDA 143 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~----r~~~~~--~~~~i~~~~~da~~-lp~~d~sfD~ 143 (265)
..++|-+|.|.|....++.+ ++.-.+|+-+|+.|.|++.++. |..+++ ..++++.+..||.+ +.-..+.||+
T Consensus 290 a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred CCEEEEECCCCHHHHHHHHH-CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCE
T ss_conf 42699972875187999971-88855278974388999873002676660367766875699965478899741345557
Q ss_pred CEEEEEECCCHHHH----------HHHCCCCHHCCCCCEEEEEE---CCCCCC
Q ss_conf 03664201321344----------32012100048521177630---554455
Q gi|254780624|r 144 CTLAFGIRNMPHIT----------LVLQEIYRILKCGGRLLVLE---FSEVQG 183 (265)
Q Consensus 144 V~~sf~l~~~~d~~----------~~l~e~~RvLKpGG~~~i~d---f~~p~~ 183 (265)
|..- ++||. ....-..|.|+++|.+++.- +++|+.
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v 416 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV 416 (508)
T ss_pred EEEE-----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCE
T ss_conf 9996-----89989951343210899999997337575499954887657730
No 199
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.18 E-value=0.00031 Score=47.50 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=67.4
Q ss_pred HHHHHHCCCCCCCCEEEECCH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998520644679977986023-3557777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAG-GTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGc-GTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+.++....++++ +|+=+|+ |-|.++..+++... ++|+++|.|++-++.|++- +...-|... |.+.++--
T Consensus 157 ~alk~~~~~pG~--~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GAd~~i~~~--~~~~~~~~ 226 (339)
T COG1064 157 RALKKANVKPGK--WVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GADHVINSS--DSDALEAV 226 (339)
T ss_pred EEHHHCCCCCCC--EEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH----CCCEEEECC--CCHHHHHH
T ss_conf 004653899998--9999877489999999999869--9699995787799999984----882899767--81166776
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 54467403664201321344320121000485211776305
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
.+.||+|... ++ ...+.+..+.||+||+++++-.
T Consensus 227 ~~~~d~ii~t-----v~--~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 227 KEIADAIIDT-----VG--PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred HHHCCEEEEC-----CC--HHHHHHHHHHHHCCCEEEEECC
T ss_conf 7347399998-----77--4559999998642978999788
No 200
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.13 E-value=0.0008 Score=44.80 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=68.0
Q ss_pred HHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 985206446799779860233-5577777664138863278721332222111100000112222222222233345755
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265)
.++.....++ .++|=+|+| .|.++..+++..+. .+|+++|+++.-++.|++- +...-++....+.+...-..
T Consensus 161 a~~~~~~~~g--~~VlV~G~G~iGl~~~~~ak~~Ga-~~Vi~~d~~~~rl~~a~~~----Ga~~~i~~~~~~~~~~~~~~ 233 (343)
T PRK09880 161 AAHQAGDLQG--KRVFISGVGPIGCLIVSAVKTLGA-AEIVCADLSPRSLSLARQM----GADVLVNPQNDDMDHWKAEK 233 (343)
T ss_pred HHHHCCCCCC--CEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHC----CCCEEECCCCCCHHHHHHHC
T ss_conf 6652477569--889998477679999999998699-8799997978999999972----99799879874399999636
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf 44674036642013213443201210004852117763055
Q gi|254780624|r 139 NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
..+|+|.-+ .-...+++++.++|+|||+++++-+.
T Consensus 234 g~~Dvvie~------~G~~~~~~~al~~~r~gG~iv~vG~~ 268 (343)
T PRK09880 234 GYFDVSFEV------SGHPSSVNTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CCCCEEEEE------CCCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 997789992------19999999999737798399999727
No 201
>PHA02056 putative methyltransferase
Probab=97.10 E-value=0.00041 Score=46.70 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=57.4
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 6799779860233557777766413886327872133222211110000011222222222223334575544674036
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL 146 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~ 146 (265)
.+...+|+|+|.|-|.++..++.+..+ -+++|++.++..+.++++-+ +..+|+++|+.+.++- ..||++.+
T Consensus 62 a~~tG~iiDLCAGIG~LSy~~~~r~kp-~~ivCVErN~~y~~vGkkil------PeAtWI~~Dv~~~~~~-~~FD~aIs 132 (279)
T PHA02056 62 AHCTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESN-EKFDVVIS 132 (279)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCC-CCEEEEEECHHHHHHHHHCC------CCCEEEECCEECCCCC-CCEEEEEC
T ss_conf 257853888214612357999850688-63589940857988643207------6402773231303566-62004533
No 202
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=97.01 E-value=0.00074 Score=45.01 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=73.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 9998520644679977986023355777776641388632787213322221111000001122222222222333457-
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF- 136 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~- 136 (265)
+.+++.+.+.++ ...+|.-.|.|-.+..+++...+.++++|+|--+..++.|+++.... ..++.+++++..+++-
T Consensus 13 ~Evl~~L~~~~~--g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~--~~r~~~~~~nF~~l~~~ 88 (309)
T PRK00050 13 DEVVDGLAIKPD--GIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPF--GGRFTIVHGNFSDLAEY 88 (309)
T ss_pred HHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHH
T ss_conf 999983682899--99999388983999999972799988999989889999999986525--88289992779889999
Q ss_pred --CCCCCCCCEEEEEEC--CCHHHHHHHC
Q ss_conf --554467403664201--3213443201
Q gi|254780624|r 137 --EANSFDACTLAFGIR--NMPHITLVLQ 161 (265)
Q Consensus 137 --~d~sfD~V~~sf~l~--~~~d~~~~l~ 161 (265)
+-+.+|.|+.-+|+- .+.++++++.
T Consensus 89 l~~~~~vdgil~DLGvSS~Qld~~~RGFS 117 (309)
T PRK00050 89 LAEVGKVDGILLDLGVSSPQLDDAERGFS 117 (309)
T ss_pred HHHCCCCCEEEEEEECCCHHHCCCCCCCC
T ss_conf 98638877899972248332037767875
No 203
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=97.00 E-value=0.00097 Score=44.26 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233345--
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-- 135 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-- 135 (265)
+..++.+.+.++ ...+|.-.|.|-.+..++++.++.++++|+|--+.+++.|++++... ..++.+++++..+++
T Consensus 10 ~Evi~~L~~~~~--g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~--~~r~~~~~~nF~~l~~~ 85 (310)
T pfam01795 10 QEVVELLNIKPD--GIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPF--KGRVTLIHSNFANLFAY 85 (310)
T ss_pred HHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCC--CCCEEEEECCHHHHHHH
T ss_conf 999972683899--99999588971999999984899997999989899999999853025--88589992537579999
Q ss_pred ---CCCCCCCCCEEEEEE--CCCHHHHHHHC
Q ss_conf ---755446740366420--13213443201
Q gi|254780624|r 136 ---FEANSFDACTLAFGI--RNMPHITLVLQ 161 (265)
Q Consensus 136 ---~~d~sfD~V~~sf~l--~~~~d~~~~l~ 161 (265)
..-..+|.|+.-.|+ ..+.++++++.
T Consensus 86 l~~~~~~~vdGil~DLGvSS~Qld~~~RGFS 116 (310)
T pfam01795 86 LKELGVGKVDGILFDLGVSSPQLDGAERGFS 116 (310)
T ss_pred HHHCCCCCCCEEEEECCCCCHHHCCCCCCCC
T ss_conf 9875987667899964468142147756867
No 204
>KOG1099 consensus
Probab=96.91 E-value=0.001 Score=44.10 Aligned_cols=119 Identities=16% Similarity=0.301 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHCC------CCCCCCEEEECCHHHHHHHHHHHHHCCC----CC---
Q ss_conf 999987634211576676148017999-999852064------4679977986023355777776641388----63---
Q gi|254780624|r 31 NHVFSRVSHRYDVMNDLMSLGLHRFWK-EAMVTNLNP------RKSKDYRVLDVAGGTGDVAFRIAEASDN----RS--- 96 (265)
Q Consensus 31 ~~~F~~iA~~YD~~N~~~S~G~~r~Wr-~~~i~~l~~------~~~~~~~iLDiGcGTG~~~~~l~~~~~~----~~--- 96 (265)
+++|=+.|+. ..|| |.+.+.|+. ..+ -.|+.|++.-.|.++..++++... ..
T Consensus 9 RDiYYRlAKe-------------~gwRARSAFKLlqideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~ 74 (294)
T KOG1099 9 RDIYYRLAKE-------------NGWRARSAFKLLQIDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERD 74 (294)
T ss_pred HHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 6799998876-------------06157767777501366627760-367743530898399999999732488742011
Q ss_pred -EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCEEE-----EEECCCHHH------
Q ss_conf -27872133222211110000011222222222223334--------5755446740366-----420132134------
Q gi|254780624|r 97 -QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--------PFEANSFDACTLA-----FGIRNMPHI------ 156 (265)
Q Consensus 97 -~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--------p~~d~sfD~V~~s-----f~l~~~~d~------ 156 (265)
+|++||+.+ |.-+ ..|.-+++|+.+. -|..+.-|+|+|- -|+|.+.+.
T Consensus 75 ~kIVaVDLQ~-MaPI-----------~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLl 142 (294)
T KOG1099 75 KKIVAVDLQP-MAPI-----------EGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLL 142 (294)
T ss_pred CCEEEEECCC-CCCC-----------CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 6279985565-7766-----------762785045577768999999857997667884799874453208899999999
Q ss_pred HHHHCCCCHHCCCCCEEEE
Q ss_conf 4320121000485211776
Q gi|254780624|r 157 TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 157 ~~~l~e~~RvLKpGG~~~i 175 (265)
..+|+-..+||||||.|+-
T Consensus 143 laAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099 143 LAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHHHHHEECCCCEEEH
T ss_conf 9998777420147875255
No 205
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.89 E-value=0.0017 Score=42.66 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=74.4
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCC---CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9998520644679977986023355777776641388---6327872133222211110000011222222222223334
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDN---RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~---~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
+-+++.+.|.+.+ +|+|-+||||.+....++.... ...++|.++.+.+.+.|+....-.+...++...++|...-
T Consensus 176 ~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~ 253 (489)
T COG0286 176 ELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN 253 (489)
T ss_pred HHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999975776565--23473354037999999999751555049989566889999996116627874223433442368
Q ss_pred CCC-----CCCCCCCEEE--EE------EC--C-----------CH----HHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 575-----5446740366--42------01--3-----------21----3443201210004852117763
Q gi|254780624|r 135 PFE-----ANSFDACTLA--FG------IR--N-----------MP----HITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 135 p~~-----d~sfD~V~~s--f~------l~--~-----------~~----d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
|.. ...||.|.+- |+ .. . ++ +....++.+.+.|+|||+..|+
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~~g~aaiv 325 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 733234665550168657995544434433100243200025778889527899999999971867705899
No 206
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.84 E-value=0.0012 Score=43.59 Aligned_cols=99 Identities=24% Similarity=0.355 Sum_probs=75.1
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEE-EE
Q ss_conf 9779860233557777766413886327872133222211110000011222222222223334575-544674036-64
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE-ANSFDACTL-AF 148 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~-d~sfD~V~~-sf 148 (265)
+.+|||.-||||.-++.++...+ ..+|+.-|++++.++..+++++..+. .+++..+.||..+=.+ ...||+|=+ .|
T Consensus 52 ~~~ilDalsasGiR~iRy~~E~~-~~~v~~NDi~~~a~~~i~~N~~~N~~-~~~~v~~~dAn~lm~~~~~~fD~IDlDPf 129 (376)
T PRK04338 52 RKSVLDALSASGIRGIRYALETG-VEKVILNDINPDAVELIKKNLELNGL-ENAEVFNEDANVLLHENERKFDVVDIDPF 129 (376)
T ss_pred CCEEEECCCCCCHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHCCCCCCEEEECCC
T ss_conf 97687406765499999987279-98799956999999999999998299-82698132489999837875877867899
Q ss_pred EECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 2013213443201210004852117763
Q gi|254780624|r 149 GIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 149 ~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
| .+...|..+.+.+|.||.+.+.
T Consensus 130 G-----Sp~pflDsAi~~v~~~GlL~vT 152 (376)
T PRK04338 130 G-----SPAPFLDSAIRALRRGGLLCVT 152 (376)
T ss_pred C-----CCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9-----9208799999984039889999
No 207
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.83 E-value=0.0035 Score=40.68 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=69.0
Q ss_pred HHHHHHCCCCCCCCEEEECCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--CC
Q ss_conf 99852064467997798602335-5777776641388632787213322221111000001122222222222333--45
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGT-GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--LP 135 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGT-G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--lp 135 (265)
.+++....+++ .+||=+|+|+ |.++..+++..+. .+|+++|.++.-++.|++- |...-|+....|..+ ..
T Consensus 167 ~~~~~~~~~~g--~~VlV~GaG~iGl~a~~~ak~~Ga-~~Vi~~d~~~~rl~~A~~l----Ga~~~i~~~~~~~~~~v~~ 239 (358)
T TIGR03451 167 AAVNTGGVKRG--DSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAREF----GATHTVNSSGTDPVEAIRA 239 (358)
T ss_pred HHHHHCCCCCC--CEEEEECCCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHC----CCEEEECCCCCCHHHHHHH
T ss_conf 89864079999--889996737699999999998399-1899991988999999965----9909973998788999999
Q ss_pred CCCC-CCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 7554-46740366420132134432012100048521177630554455
Q gi|254780624|r 136 FEAN-SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 136 ~~d~-sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
+-++ -+|+|.-+ .-...++++..+.++|||+++++-...+..
T Consensus 240 ~t~g~G~Dvvie~------~G~~~~~~~al~~~~~gG~iv~~G~~~~~~ 282 (358)
T TIGR03451 240 LTGGFGADVVIDA------VGRPETYKQAFYARDLAGTVVLVGVPTPDM 282 (358)
T ss_pred HHCCCCCCEEEEC------CCCHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 8589887499999------999899999999762796999992258997
No 208
>KOG2798 consensus
Probab=96.81 E-value=0.0024 Score=41.68 Aligned_cols=144 Identities=23% Similarity=0.301 Sum_probs=79.8
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------CCCCCH---------------------H------
Q ss_conf 977986023355777776641388632787213322221-------111000---------------------0------
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLS-------VGRDRA---------------------F------ 116 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~-------~a~~r~---------------------~------ 116 (265)
..+||-=|||+|.++..|+.... .+-|=++|--|+- .++..- .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798 151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CCEEEECCCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 86288148871167899887433---334307899999999999875426784799742120145553013436656765
Q ss_pred -----CCCCCCCCCCCCCCCCCC---CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHH
Q ss_conf -----011222222222223334---575544674036642013213443201210004852117763055445510112
Q gi|254780624|r 117 -----KENLQDCITFIEANAETL---PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKK 188 (265)
Q Consensus 117 -----~~~~~~~i~~~~~da~~l---p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~ 188 (265)
..+.........||..+. +-..++||+|+..|-+-.-.|.-..|+.|+.+|||||.++-+- |+
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG------PL--- 298 (369)
T KOG2798 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG------PL--- 298 (369)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEECC------CE---
T ss_conf 564434789987422156505772676777755548999875243779999999998515783899325------62---
Q ss_pred HHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 3456531113321025428876865789999968998999999997599537999
Q gi|254780624|r 189 IYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 189 ~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265)
+|.+ . +.-|. ..+ -||+ ++-+++..+++.-||+.++.+
T Consensus 299 lYHF-~----d~~g~----~~~------~siE--ls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798 299 LYHF-E----DTHGV----ENE------MSIE--LSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred EEEC-C----CCCCC----CCC------CCCC--CCHHHHHHHHHHCCCEEEEEE
T ss_conf 5513-6----78887----655------3102--469999999984582787740
No 209
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.00058 Score=45.71 Aligned_cols=109 Identities=19% Similarity=0.336 Sum_probs=62.1
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEEE
Q ss_conf 7798602335577777664138863278721332222111100000112222222222233--34575544674036642
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE--TLPFEANSFDACTLAFG 149 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~--~lp~~d~sfD~V~~sf~ 149 (265)
.+|||+|.|+|--...+....+..-+++.+..|+..-++.-. +...-....-.+..+|.. .++++. -|.+++.++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl~lp~--ad~ytl~i~ 191 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRLSLPA--ADLYTLAIV 191 (484)
T ss_pred CHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-HHHHCCCCCCCCCCCCCCHHCCCCCC--CCEEEHHHH
T ss_conf 102003778752123320337880221234048999999999-98604533477778865021047883--223633343
Q ss_pred ECCC-HH-HHH----HHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 0132-13-443----2012100048521177630554455
Q gi|254780624|r 150 IRNM-PH-ITL----VLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 150 l~~~-~d-~~~----~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
++.+ ++ .++ .++....++.|||.++|+|-++|-.
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 5444435574318899999998606897499971798236
No 210
>KOG3115 consensus
Probab=96.65 E-value=0.0013 Score=43.43 Aligned_cols=98 Identities=22% Similarity=0.358 Sum_probs=66.0
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC------CCCCCCCCCCCCCC-CC--CCCCCCCC
Q ss_conf 79860233557777766413886327872133222211110000011------22222222222333-45--75544674
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN------LQDCITFIEANAET-LP--FEANSFDA 143 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~------~~~~i~~~~~da~~-lp--~~d~sfD~ 143 (265)
-+.|||||-|-+...++.++++ .-|.|++|-..--+..++|++... ...||...+.++.. +| |+..+.+-
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115 63 EFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred EEEEECCCCCCHHHHCCCCCCC-CEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHCCCCC
T ss_conf 2786046765010120546863-012200126888899999999975265433456530342120220510343123344
Q ss_pred CEEEEEECCCHHH-------------HHHHCCCCHHCCCCCEEEEE
Q ss_conf 0366420132134-------------43201210004852117763
Q gi|254780624|r 144 CTLAFGIRNMPHI-------------TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 144 V~~sf~l~~~~d~-------------~~~l~e~~RvLKpGG~~~i~ 176 (265)
.. |. +||+ ...+.|..-+|++||.+..+
T Consensus 142 mf--f~---fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115 142 MF--FL---FPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred CE--EE---CCCHHHHHHHCCCEEECHHHHHHHHHHHHCCCEEEEE
T ss_conf 40--32---5880576652121012034798777422138448997
No 211
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.63 E-value=0.065 Score=32.52 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=89.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233345--
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-- 135 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-- 135 (265)
+++...+.. ....+||++|+++|.++....+.++.++-.+.++-+...... ...++-.....+-..+.++.+.+.
T Consensus 482 ~rl~~~~~~--qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL-~aQl~lLdpL~RP~Ll~~~~~~l~~L 558 (726)
T PRK13341 482 DRLWSGITW--QRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRL-EAQLDLLDPLGRPVLLDAGLLALKYL 558 (726)
T ss_pred HHHHCCCCC--CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHHHHCCHHCCCCEEECCCHHHHHC
T ss_conf 998433665--634359983385126526778618998669983788899999-99987468111971121671146537
Q ss_pred CCCCCCCCCEEEEEECCCHHH--HHHHCCCCHHCCCCCEEEEEECCCCCCCH-HHHHHHHHHHCHHHHHHHHHCCCHHHH
Q ss_conf 755446740366420132134--43201210004852117763055445510-112345653111332102542887686
Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHI--TLVLQEIYRILKCGGRLLVLEFSEVQGPV-FKKIYDMWSFKVIPQLGRFIAGDEEPY 212 (265)
Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~--~~~l~e~~RvLKpGG~~~i~df~~p~~~~-~~~~~~~y~~~iiP~~g~~~~~~~~~Y 212 (265)
-++-.||.|.-..++..+.+. ....+++-..|-|+|.+.+++ |.|.--. ...+-+ . ......|
T Consensus 559 ~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~-S~P~~Gpa~all~~----~---------~~~~~~l 624 (726)
T PRK13341 559 PANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLI-SQPEAGPALALLLK----A---------PVEDKLL 624 (726)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCHHHHHCC----C---------CCHHHHH
T ss_conf 98764247833320023422569999999998659986699863-57764807887356----9---------4048999
Q ss_pred HHHHHHHHHC----CCHHHHHHHHHHCCCCEEEEE
Q ss_conf 5789999968----998999999997599537999
Q gi|254780624|r 213 QYLIESIRRF----PNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 213 ~yL~~Si~~f----~~~~el~~~l~~aGF~~v~~~ 243 (265)
.-|.+-=..| ..+..|...|+++|+. ++..
T Consensus 625 ~~L~~aEe~wl~~~~~~~~Lqq~le~~gws-l~~e 658 (726)
T PRK13341 625 SALLEAEELWLKSQSMPALLQQQLEEAGWS-LGIE 658 (726)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-CEEE
T ss_conf 999999999962688859999999974884-5351
No 212
>PRK10083 putative dehydrogenase; Provisional
Probab=96.58 E-value=0.0051 Score=39.60 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=63.9
Q ss_pred HHHHHHCCCCCCCCEEEECCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99852064467997798602335-57777766413886327872133222211110000011222222222223334575
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGT-GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGT-G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+++....+.+++ ++|=+|||+ |..+..++++...-..|+++|.++.=++.|++- |...-|+....+..+. +.
T Consensus 151 ~~~~~~~~~~g~--~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~----GAd~vi~~~~~~~~~~-~~ 223 (339)
T PRK10083 151 NVTGRTGPTEQD--VALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKES----GADWVINNAQESLAEA-LA 223 (339)
T ss_pred HHHHHHCCCCCC--EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC----CCCEEECCCCCCHHHH-HH
T ss_conf 999861899998--8999587659999999999856997899937989999999971----9989984887669999-98
Q ss_pred CCCCC--CCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 54467--40366420132134432012100048521177630554
Q gi|254780624|r 138 ANSFD--ACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 138 d~sfD--~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
..-.| +|+-+ .--..+++++.++++|||+++++-++.
T Consensus 224 ~~G~~~dvvid~------~g~~~~~~~a~~~~~~gG~iv~~G~~~ 262 (339)
T PRK10083 224 EKGVKPTLIFDA------ACHPSILEEAVTLASPAARIVLMGFSS 262 (339)
T ss_pred HCCCCCCEEEEC------CCCHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 539996199966------668899999999851880999992589
No 213
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.47 E-value=0.003 Score=41.12 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=62.7
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEE
Q ss_conf 977986023355777776641388632787213322221111000001122222222222333457554-46740366
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN-SFDACTLA 147 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~-sfD~V~~s 147 (265)
+.++.|+||--+.+...+.+..+ -..+++.|++++-++.|.+...+.++.+.|+..++|... +++.+ .+|.|+++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELEDEIDVIVIA 92 (226)
T ss_pred CCCEEECCCCHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCEEEEE
T ss_conf 99455326762576899996598-326898310667899999988745885207775268731-25766776879995
No 214
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=96.37 E-value=0.00071 Score=45.15 Aligned_cols=59 Identities=15% Similarity=0.372 Sum_probs=52.7
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 798602335577777664138863278721332222111100000112222222222233345
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP 135 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp 135 (265)
-+|++=||-|..|+.||+.+. +|.+.+||..-++.|+.++...+. .||+++...||++.
T Consensus 206 DLLELYCGNGNFsLaLA~~f~---rVLATEiaK~SV~aAq~Ni~~N~i-dNv~i~RlSAEEft 264 (361)
T TIGR02143 206 DLLELYCGNGNFSLALAQNFE---RVLATEIAKPSVNAAQYNIAANKI-DNVQIIRLSAEEFT 264 (361)
T ss_pred CCCEEECCCCCCHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHCCCC-CCEEHHHHHHHHHH
T ss_conf 201000267531044565333---455430240247999999871798-83101023279999
No 215
>KOG1253 consensus
Probab=96.35 E-value=0.00085 Score=44.65 Aligned_cols=103 Identities=25% Similarity=0.359 Sum_probs=79.5
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q ss_conf 799779860233557777766413886327872133222211110000011222222222223334----5755446740
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL----PFEANSFDAC 144 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l----p~~d~sfD~V 144 (265)
.++.+|||.=|+||..++..++..+.-.+|++-|.+++-++..++++.-.+....++-.++||..+ +-.+..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCEE
T ss_conf 67500898764551788899887042453103678777889998665506732211244102778987564521246667
Q ss_pred EE-EEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 36-642013213443201210004852117763
Q gi|254780624|r 145 TL-AFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 145 ~~-sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
-. .|| .+...|.-++|.+..||.+.+.
T Consensus 188 DLDPyG-----s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253 188 DLDPYG-----SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ECCCCC-----CCCHHHHHHHHHHHCCCEEEEE
T ss_conf 237889-----9627799999986408779998
No 216
>KOG1501 consensus
Probab=96.34 E-value=0.0062 Score=39.08 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=52.0
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355777776641388632787213322221111000001122222222222333457
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF 136 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~ 136 (265)
...+||+|.|||.++...++...+ .|++++.=..|.+.|++-..+.+..++|+.+..-..++..
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~v 130 (636)
T KOG1501 67 KVFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKV 130 (636)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC--EEEEEHHHCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEE
T ss_conf 389997268810899998873577--0775212221899999988418876522662036631555
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.33 E-value=0.0027 Score=41.44 Aligned_cols=98 Identities=11% Similarity=0.220 Sum_probs=68.7
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 77986023355777776641388632787213322221111000001122222222222333457554467403664201
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIR 151 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~ 151 (265)
....|+|.|+|.++.-.++.. -+|++++..+.--+.|.+++.-.+ ..|++.+.+||....|+ .-|+|.|-. |-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~fe--~ADvvicEm-lD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDFE--NADVVICEM-LD 106 (252)
T ss_pred HCEEECCCCCCHHHHHHHHHH---CEEEEEECCCHHHHHHHHCCCCCC-CCCEEEEECCCCCCCCC--CCCEEHHHH-HH
T ss_conf 105634688632889887532---027887418078777650577788-76468980553213323--453408777-66
Q ss_pred C--C-HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 3--2-13443201210004852117763
Q gi|254780624|r 152 N--M-PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 152 ~--~-~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
. + +....+++.+..-||-.+.++=.
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCH
T ss_conf 7763342128999999986338825258
No 218
>KOG3201 consensus
Probab=96.24 E-value=0.00087 Score=44.57 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=69.4
Q ss_pred CEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC---CCC---CCCCCCCCCCCCCCCCCCCC
Q ss_conf 779860233-55777776641388632787213322221111000001122---222---22222233345755446740
Q gi|254780624|r 72 YRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ---DCI---TFIEANAETLPFEANSFDAC 144 (265)
Q Consensus 72 ~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~---~~i---~~~~~da~~lp~~d~sfD~V 144 (265)
.+||++|.| ||...+.+|.+.++ .+|.-.|-.++.++-.++ +...+.. ..+ ++..-.+.. ..+-++||.|
T Consensus 31 ~~ilelgggft~laglmia~~a~~-~~v~ltdgne~svrnv~k-i~~~n~~s~~tsc~vlrw~~~~aqs-q~eq~tFDiI 107 (201)
T KOG3201 31 RRILELGGGFTGLAGLMIACKAPD-SSVWLTDGNEESVRNVEK-IRNSNMASSLTSCCVLRWLIWGAQS-QQEQHTFDII 107 (201)
T ss_pred HHHHHHCCCHHHHHHHHEEEECCC-CEEEEECCCHHHHHHHHH-HHHCCCCCCCCEEHHHHHHHHHHHH-HHHHCCCCEE
T ss_conf 889872674465545520453587-358871697899997999-9851200256500034787764488-8751702279
Q ss_pred EEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf 366420132134432012100048521177630554455101123
Q gi|254780624|r 145 TLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKI 189 (265)
Q Consensus 145 ~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~ 189 (265)
+++-++-.-+..+...+-|.+.|+|-|+.++ |+.-....++++
T Consensus 108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~--fsPRRg~sL~kF 150 (201)
T KOG3201 108 LAADCLFFDEHHESLVDTIKSLLRPSGRALL--FSPRRGQSLQKF 150 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCEEE--ECCCCCCHHHHH
T ss_conf 8601025889999999999998584666167--667555569999
No 219
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.0085 Score=38.20 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=73.8
Q ss_pred HHHH---HHHHHHHH----C-CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 1799---99998520----6-44679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 53 HRFW---KEAMVTNL----N-PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 53 ~r~W---r~~~i~~l----~-~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
.|.| |.++...+ . ....++.+||=+|.-+|-....++...+ .+.++|+++|+.+...--.-+.+ .+||
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni 126 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNI 126 (231)
T ss_pred EEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHH---CCCC
T ss_conf 5656765137799997370027769998789950367985767776047-87089999644469999999874---7874
Q ss_pred CCCCCCCCCCC-C--CCCCCCCCEEEEEECCCHHH---HHHHCCCCHHCCCCCEEEEE
Q ss_conf 22222233345-7--55446740366420132134---43201210004852117763
Q gi|254780624|r 125 TFIEANAETLP-F--EANSFDACTLAFGIRNMPHI---TLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 125 ~~~~~da~~lp-~--~d~sfD~V~~sf~l~~~~d~---~~~l~e~~RvLKpGG~~~i~ 176 (265)
--+.+||.... + ==+..|+|.. .+..+ +-+..++..-||+||.+++.
T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEEECCCCCCHHHHHHCCCCCEEEE-----ECCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 0020136883776531245438998-----3688107899998899732169739999
No 220
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.18 E-value=0.0063 Score=39.03 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCC
Q ss_conf 179999998520644679977986023355777776641388632787213322221111000001122-2222222223
Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANA 131 (265)
Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da 131 (265)
||.-|+.+.+.. ++.++|-+=|=||..+...+.- .-.+.+-||+|..-|+.|+++..-.++. .+-.|+++|+
T Consensus 540 hR~~R~~i~~~a-----~gk~fLNLF~YTgt~sv~Aa~g--GA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~ 612 (716)
T PRK11783 540 HRPTRRMIGQMA-----KGKRFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADC 612 (716)
T ss_pred CHHHHHHHHHHH-----CCCCEEEEEECCCCEEHHHHHC--CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCH
T ss_conf 379999999970-----7884643122256102133527--961227862708799999999985499963473896408
Q ss_pred CC-CCCCCCCCCCCEE---EEE----EC---CC-HHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 33-4575544674036---642----01---32-134432012100048521177630554
Q gi|254780624|r 132 ET-LPFEANSFDACTL---AFG----IR---NM-PHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 132 ~~-lp~~d~sfD~V~~---sf~----l~---~~-~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
.. |.-..+.||+|++ +|+ .. .+ -|....++.+.+.|.|||.++ ||.
T Consensus 613 ~~wl~~~~~~fDli~~DPPtFSnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~---FS~ 670 (716)
T PRK11783 613 LAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLY---FSN 670 (716)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE---EEC
T ss_conf 9999857776678998899998766678863220309999999998608996899---962
No 221
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.16 E-value=0.0058 Score=39.28 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=61.7
Q ss_pred HHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC----
Q ss_conf 85206446799779860233-5577777664138863278721332222111100000112222222222233345----
Q gi|254780624|r 61 VTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP---- 135 (265)
Q Consensus 61 i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp---- 135 (265)
+.....+++ .+++=+||| .|.++..+++..+ ++|+++|.++.-++.|++- +...-++....+.+++.
T Consensus 159 ~~~~~v~~g--~~V~V~G~G~iGl~a~~~ak~~G--a~Vi~vd~~~~rle~a~~~----Ga~~~i~~~~~~~~~~~~~~~ 230 (349)
T TIGR03201 159 AVQAGLKKG--DLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIK 230 (349)
T ss_pred HHHCCCCCC--CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHC----CCCEEECCCCCCHHHHHHHHH
T ss_conf 631178999--88999897489999999999859--9799994999999999964----998998787677899999997
Q ss_pred -C-CCCCCC----CCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf -7-554467----4036642013213443201210004852117763055
Q gi|254780624|r 136 -F-EANSFD----ACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 136 -~-~d~sfD----~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
+ ...-.| .|+ ...-...+++.+.+.++|||+++++-+.
T Consensus 231 ~~~~~~G~~~~~~~v~------e~~G~~~~~~~a~~~~~~gG~iv~vG~~ 274 (349)
T TIGR03201 231 AFAKARGLRSTGWKIF------ECSGSKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred HHCCCCCCCCCCCEEE------EECCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 5414567565563699------8248889999999973589799997505
No 222
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.16 E-value=0.012 Score=37.22 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=63.6
Q ss_pred HHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 985206446799779860233-557777766413886327872133222211110000011222222222223334--57
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--PF 136 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--p~ 136 (265)
+++..+...++ ++|=+|+| .|.++..+++..+. ..|+.+|.|++-++.|++- |...-++....++++. ..
T Consensus 152 a~~~~~~~~g~--~vlV~GaG~vGl~aiq~ak~~Ga-~~V~~~d~~~~kl~~a~~l----GAd~~i~~~~~~~~~~~~~~ 224 (347)
T PRK10309 152 AFHLAQGCEGK--NVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKSL----GAMQTFNSREMSAPQIQSVL 224 (347)
T ss_pred HHHHCCCCCCC--EEEEECCCCHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHC----CCCEEECCCCCCHHHHHHHH
T ss_conf 77650588898--69998998389999999998599-7699992899999999972----99899868877999999986
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 55446740366420132134432012100048521177630
Q gi|254780624|r 137 EANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 137 ~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
....+|.|+.- ..--...++...++++|+|+++++-
T Consensus 225 ~~~~~d~vvid-----~~G~~~~~~~a~~~~~~~G~iv~~G 260 (347)
T PRK10309 225 RELRFDQLILE-----TAGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCCCCEEEEE-----CCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 29988869997-----9999899999999618974999980
No 223
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=96.15 E-value=0.0076 Score=38.50 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=76.8
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC--CCCC
Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100000112--2222
Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL--QDCI 124 (265)
Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~--~~~i 124 (265)
+.|-|-.+. ..+++.-...-+ +..+||+|+-||-.+..++++.- .+|+|||.+-++|+..-+...+-.. ..||
T Consensus 57 fVSRGG~KL--~~~L~~F~~~vk-~ki~lD~GsS~GGFtd~aL~~GA--k~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~ 131 (240)
T TIGR00478 57 FVSRGGEKL--KEALEEFEVDVK-NKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNI 131 (240)
T ss_pred EECCHHHHH--HHHCCCCCEEEC-CEEEEEECCCCCHHHHHHHHCCC--CEEEEEEECCHHHHHHCCCCCEEEEEECCCC
T ss_conf 005045899--985354331337-86899705673048999987058--4677786032133432363662689645787
Q ss_pred C--CCCCCCC-CCCCCC-CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHH
Q ss_conf 2--2222233-345755-4467403664201321344320121000485211776305544551011
Q gi|254780624|r 125 T--FIEANAE-TLPFEA-NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFK 187 (265)
Q Consensus 125 ~--~~~~da~-~lp~~d-~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~ 187 (265)
. ....|+. .-|.|+ +.+|+ || -.....+.++...|.|+--+++ +-+|+....|
T Consensus 132 rGy~T~~d~~~~qP~P~lA~~Dv---SF-----iSl~~il~~L~~lL~P~~~~~~--L~kPqFe~~R 188 (240)
T TIGR00478 132 RGYVTPADIVKDQPMPDLAVVDV---SF-----ISLISILPELLLLLNPDNDLLL--LVKPQFEVGR 188 (240)
T ss_pred CCCCCHHHHHCCCCCCCHHHHHH---HH-----HHHHHHHHHHHHHHCCCCEEEE--EECCCCEEEE
T ss_conf 44466565407888973144445---78-----8799999988875088960788--5077523330
No 224
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=96.14 E-value=0.0043 Score=40.11 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=64.3
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 9852064467997798602335577777664138-8632787213322221111000001122222222222333-4575
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD-NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFE 137 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~-~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~ 137 (265)
....+....+.+.+++|+|||+|.++..++...+ -.+.+.++|+++..+..+++.........++.+.+++..+ ++-.
T Consensus 116 ~~~~~~~~~~~p~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (311)
T TIGR00536 116 ALASLLSQPPLPLHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGL 195 (311)
T ss_pred HHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHC
T ss_conf 88754114776501110145631566655430466662266411223678888876776432012001011244433203
Q ss_pred CC-CCCCCEE
Q ss_conf 54-4674036
Q gi|254780624|r 138 AN-SFDACTL 146 (265)
Q Consensus 138 d~-sfD~V~~ 146 (265)
.. .+|.++.
T Consensus 196 ~~p~~~~~~~ 205 (311)
T TIGR00536 196 GGPKLDLLVS 205 (311)
T ss_pred CCCCEEEEEC
T ss_conf 6652236645
No 225
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=96.12 E-value=0.0059 Score=39.20 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCHHCCCCCC-CCCCCCCCC
Q ss_conf 799999985206446799779860233557777766413886327872-133222211110000011222-222222223
Q gi|254780624|r 54 RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVA-DINNEMLSVGRDRAFKENLQD-CITFIEANA 131 (265)
Q Consensus 54 r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~gi-D~s~~Ml~~a~~r~~~~~~~~-~i~~~~~da 131 (265)
....+.++.......+ ..++|--||||.+.....-. ..+++|+ |+...|.+-++..+...+... -.....+|+
T Consensus 189 p~~~~~~~~~~~~~~g--~~~~dp~~g~gg~~~~~gl~---g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~ 263 (358)
T TIGR01177 189 PKLARALVNLAGVKEG--DRLLDPFCGTGGFLIEAGLL---GAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDA 263 (358)
T ss_pred HHHHHHHHHHHHCCCC--CCEECCCCCCCCHHHHHHHH---CCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCC
T ss_conf 4677777654202467--51004222666033233332---110002440356764252111333055431567640330
Q ss_pred CCCCCC--C--CCCCCCEEE--EEECC------C-HHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 334575--5--446740366--42013------2-134432012100048521177630
Q gi|254780624|r 132 ETLPFE--A--NSFDACTLA--FGIRN------M-PHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 132 ~~lp~~--d--~sfD~V~~s--f~l~~------~-~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
.++|.. + +++|.+... |+... . .-..+.+.++.++++++|.+++.-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~d~p~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~ 322 (358)
T TIGR01177 264 KDLPLRLPGLDESVDAIATDPPYGRSTTAAGDGLEELYEKSLEELHEVLKGGGWLAVAV 322 (358)
T ss_pred HHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 01110035310112222125654531112210368888888888888642687179974
No 226
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=96.06 E-value=0.038 Score=34.04 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=60.3
Q ss_pred HHHHHHCCCCCCCCEEEECCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998520644679977986023--355777776641388632787213322221111000001122222222222333457
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAG--GTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF 136 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGc--GTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~ 136 (265)
++++.+...++ .+||=.|+ |.|..+..+++..+ +++++++.+++-++.+++- . ..-+.... ..+.+.
T Consensus 153 ~al~~~~~~~g--~~VlI~Ga~G~vG~~aiqlak~~G--a~vi~v~~~~~k~~~~~~~-~----~~~i~~~~-~~~~~~- 221 (332)
T PRK13771 153 RGLRRAGVSEG--ETVLVTGAGGGVGIHAVQVAKAYG--AKVIAVTTSESKAKAVGKY-A----DYVIVGSK-FSEEVK- 221 (332)
T ss_pred HHHHHHCCCCC--CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHC-C----CEEEECCC-HHHHHH-
T ss_conf 99997199999--999997787758999999999869--9899994999999999856-9----98983630-578887-
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 55446740366420132134432012100048521177630
Q gi|254780624|r 137 EANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 137 ~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
.-..+|+|.-+-+ . ..+++..+.|+|||+++++-
T Consensus 222 ~~~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G 255 (332)
T PRK13771 222 KLGGADIVIETVG-----G--PTLEESLRSLNWGGKIVLIG 255 (332)
T ss_pred HCCCCCEEEECCC-----H--HHHHHHHHHHCCCCEEEEEE
T ss_conf 3468638984576-----6--88998888625896999993
No 227
>KOG2539 consensus
Probab=96.06 E-value=0.0042 Score=40.16 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=64.4
Q ss_pred CEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC-C--CCCCCCCC-CCCCCCEE
Q ss_conf 77986023355777776641388-63278721332222111100000112222222222-2--33345755-44674036
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDN-RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA-N--AETLPFEA-NSFDACTL 146 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~-d--a~~lp~~d-~sfD~V~~ 146 (265)
..++|+|.|+|.-...+...... .-.++.||.|..|++........ +.+.+-.++.. - -..+|... +.||+|++
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCC-HHHCCCHHCCCCCHHCCCCCCCCCCCEEEEEE
T ss_conf 79999874315551035343002122067632555888888876247-33327502155320101278885553236886
Q ss_pred EEEECCCHHHH---HHHCCCC-HHCCCCCEEEEEECCCC
Q ss_conf 64201321344---3201210-00485211776305544
Q gi|254780624|r 147 AFGIRNMPHIT---LVLQEIY-RILKCGGRLLVLEFSEV 181 (265)
Q Consensus 147 sf~l~~~~d~~---~~l~e~~-RvLKpGG~~~i~df~~p 181 (265)
++.|+++.+.. ...++.+ +..+||+.++|+|-+.+
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 634301478204656369999860687741799855886
No 228
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.88 E-value=0.017 Score=36.21 Aligned_cols=112 Identities=19% Similarity=0.116 Sum_probs=65.0
Q ss_pred HHHHHHCCCCCCCCEEEECCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 99852064467997798602335-5777776641388632787213322221111000001122222222-222333457
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGT-GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI-EANAETLPF 136 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGT-G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~-~~da~~lp~ 136 (265)
+.++...+.++ .++|=+|+|+ |.++..+++..+ ..+|+.+|.++.-++.|++- +...-++-. ..+....-.
T Consensus 111 ~~~~~~~~~~g--~~V~V~G~G~iGl~~~~~a~~~G-a~~Vi~~d~~~~rl~~a~~~----Ga~~~i~~~~~~~~~~~~~ 183 (280)
T TIGR03366 111 AALEAAGDLKG--RRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALSF----GATALAEPEVLAERQGGLQ 183 (280)
T ss_pred HHHHHCCCCCC--CEEEEEECCHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHC----CCCEEECCCCHHHHHHHHH
T ss_conf 99997178999--98999907868999999999849-98799991998999999973----9989837757799999972
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 55446740366420132134432012100048521177630554455
Q gi|254780624|r 137 EANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 137 ~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
....+|+|+- ..-...+++++.+.|+|||+++++-...|..
T Consensus 184 ~g~g~D~vie------~~G~~~~~~~a~~~l~~gG~iv~vG~~~~~~ 224 (280)
T TIGR03366 184 NGRGVDVALE------FSGATAAVRACLESLDVGGTAVLAGSVFPGG 224 (280)
T ss_pred CCCCCCEEEE------CCCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 7888709998------7898899999999860498999980468998
No 229
>KOG0024 consensus
Probab=95.84 E-value=0.018 Score=36.17 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=71.4
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 614801799999985206446799779860233-5577777664138863278721332222111100000112222222
Q gi|254780624|r 48 MSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265)
Q Consensus 48 ~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265)
+|.|.| +.++-..+++ .++|=+|+| .|..+...|+.++- .+|+.+|++++-|+.||+ .-.... .++.-
T Consensus 155 LsV~~H------Acr~~~vk~G--s~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~ 223 (354)
T KOG0024 155 LSVGVH------ACRRAGVKKG--SKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGATVT-DPSSH 223 (354)
T ss_pred HHHHHH------HHHHCCCCCC--CEEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHH-HCCEEE-ECCCC
T ss_conf 022120------3332476668--868997676899999999987498-728996067779999998-297577-30445
Q ss_pred CCCCCCCC------CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 22223334------57554467403664201321344320121000485211776305544
Q gi|254780624|r 127 IEANAETL------PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 127 ~~~da~~l------p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
.. +.+.+ -+.+..+|+++-. +-.+..++-....||+||.+++.+.+.+
T Consensus 224 ~~-~~~~~~~~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024 224 KS-SPQELAELVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred CC-CHHHHHHHHHHHCCCCCCCEEEEC------CCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 56-589999999864166679868986------6604668989987512878999654787
No 230
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.79 E-value=0.023 Score=35.36 Aligned_cols=97 Identities=22% Similarity=0.299 Sum_probs=63.7
Q ss_pred EEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC-CC-CC-CCCCC-CCCCCCEEE
Q ss_conf 79860233-5577777664138863278721332222111100000112222222222-23-33-45755-446740366
Q gi|254780624|r 73 RVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA-NA-ET-LPFEA-NSFDACTLA 147 (265)
Q Consensus 73 ~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~-da-~~-lp~~d-~sfD~V~~s 147 (265)
+++=+||| -|.++..+++..+. ..|+.+|.++.=|+.|++..... .+..... +. +. +.... .-+|+|+-+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHCCCC----EEECCCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 89998888999999999987698-27999799989999999877971----87246301478899986089879999999
Q ss_pred EEECCCHHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 420132134432012100048521177630554
Q gi|254780624|r 148 FGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 148 f~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
=| ...+++++.++++|||+++++-+..
T Consensus 246 ~G------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 246 VG------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CC------CHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 89------9799999999602598999995158
No 231
>KOG0822 consensus
Probab=95.76 E-value=0.037 Score=34.06 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=75.4
Q ss_pred CCEEEECCHHHHHH---HHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 97798602335577---777664138863278721332222111100000112222222222233345755446740366
Q gi|254780624|r 71 DYRVLDVAGGTGDV---AFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 71 ~~~iLDiGcGTG~~---~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
..+|+=+|.|-|-+ ++..++....+.++++++-.++.+..-+. ..-..+..+|+.+-+|+...+-|+++-|.+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS- 445 (649)
T KOG0822 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVS- 445 (649)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH-HCHHHHCCEEEEEECCCCCCCCCHHHCCCHHH-
T ss_conf 2899996388760788999999872471579999338544042454-24365468169993431246884442120399-
Q ss_pred EEECCCHH---HHHHHCCCCHHCCCCCEEE
Q ss_conf 42013213---4432012100048521177
Q gi|254780624|r 148 FGIRNMPH---ITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 148 f~l~~~~d---~~~~l~e~~RvLKpGG~~~ 174 (265)
-.|-.+.| -..+|.-+-+.|||.|..+
T Consensus 446 ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822 446 ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCEEC
T ss_conf 764224676679778777885158885575
No 232
>KOG2198 consensus
Probab=95.74 E-value=0.017 Score=36.22 Aligned_cols=129 Identities=23% Similarity=0.353 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHCC---CCCCCCEEEECCHHHHHHHHHHHHHCCC---CCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 8017999999852064---4679977986023355777776641388---632787213322221111000001122222
Q gi|254780624|r 51 GLHRFWKEAMVTNLNP---RKSKDYRVLDVAGGTGDVAFRIAEASDN---RSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 51 G~~r~Wr~~~i~~l~~---~~~~~~~iLDiGcGTG~~~~~l~~~~~~---~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
|.-..||..++..+.+ ...++.+|||+|.-+|.=+..+.+.... .+.|++=|..+.=+..-+.-+ +.-...++
T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~ 211 (375)
T KOG2198 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNL 211 (375)
T ss_pred CCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHH-HCCCCCCE
T ss_conf 44521124244226402022679984442013898448999999723777773675345788999999998-52698433
Q ss_pred CCCCCCCCCCC---------CCCCCCCCCEEE-----E-EECCCHH----------------H-HHHHCCCCHHCCCCCE
Q ss_conf 22222233345---------755446740366-----4-2013213----------------4-4320121000485211
Q gi|254780624|r 125 TFIEANAETLP---------FEANSFDACTLA-----F-GIRNMPH----------------I-TLVLQEIYRILKCGGR 172 (265)
Q Consensus 125 ~~~~~da~~lp---------~~d~sfD~V~~s-----f-~l~~~~d----------------~-~~~l~e~~RvLKpGG~ 172 (265)
.....|+...| .+-..||-|.+- - .+|.-++ . -+.|+...|.|||||+
T Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198 212 LVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred EEECCCCEECCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 34312110056410146760334412536871456898430228027666555411359738999999999987257877
Q ss_pred EEEEECCCCCC
Q ss_conf 77630554455
Q gi|254780624|r 173 LLVLEFSEVQG 183 (265)
Q Consensus 173 ~~i~df~~p~~ 183 (265)
++ +|+..-
T Consensus 292 lV---YSTCSL 299 (375)
T KOG2198 292 LV---YSTCSL 299 (375)
T ss_pred EE---EECCCC
T ss_conf 99---942578
No 233
>KOG4058 consensus
Probab=95.67 E-value=0.0076 Score=38.50 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=75.1
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 77986023355777776641388632787213322221111000001122222222222333457554467403664201
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIR 151 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~ 151 (265)
.+.+|+|+|.|.+....++..- -..+|+++++=.+..+|-++.+.+..+...|..-|.-+..+.|-.+-+| |+..
T Consensus 74 GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vvi---Fgae 148 (199)
T KOG4058 74 GKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVI---FGAE 148 (199)
T ss_pred CCEEECCCCCCEEEHHHHHHCC--CCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEHH
T ss_conf 8178525898524466665077--7677433038999999999998742533102232110044555635899---6017
Q ss_pred C-CHHHHHHHC-CCCHHCCCCCEEEEEECCCCCC
Q ss_conf 3-213443201-2100048521177630554455
Q gi|254780624|r 152 N-MPHITLVLQ-EIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 152 ~-~~d~~~~l~-e~~RvLKpGG~~~i~df~~p~~ 183 (265)
. ++|++--|+ | |..+-+++-.-|--|++
T Consensus 149 s~m~dLe~KL~~E----~p~nt~vvacRFPLP~w 178 (199)
T KOG4058 149 SVMPDLEDKLRTE----LPANTRVVACRFPLPTW 178 (199)
T ss_pred HHHHHHHHHHHHH----CCCCCEEEEEECCCCCC
T ss_conf 8776668999864----76887378873479853
No 234
>PRK09422 alcohol dehydrogenase; Provisional
Probab=95.59 E-value=0.032 Score=34.51 Aligned_cols=106 Identities=12% Similarity=0.245 Sum_probs=61.5
Q ss_pred HHHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC-CCC-CC
Q ss_conf 9985206446799779860233-55777776641388632787213322221111000001122222222222-333-45
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEAN-AET-LP 135 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d-a~~-lp 135 (265)
++++....++++ +||=.|+| .|.++..+++... .++|+++|.|++-++.|++ .|...-|+....| ..+ +.
T Consensus 153 ~al~~~~~~~G~--~VlV~GaGgvG~~aiq~ak~~~-g~~Vi~~~~~~~k~~~a~~----lGad~vi~~~~~~~~~~~~~ 225 (338)
T PRK09422 153 KAIKVSGIKPGQ--WIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQ 225 (338)
T ss_pred HHHHHHCCCCCC--EEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----CCCCEEECCCCCCCHHHHHH
T ss_conf 999984899998--8999688689999999999808-9869999899999999997----29989981887434999999
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 755446740366420132134432012100048521177630
Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
...+.+|.++.. ... ..++.+..+.|+|||+++++-
T Consensus 226 ~~~gg~~~~v~~-----~~~-~~~~~~~~~~l~~gG~~v~vG 261 (338)
T PRK09422 226 EKTGGAHAAVVT-----AVA-KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred HHCCCCCEEEEE-----CCC-HHHHHHHHHHHHCCCEEEEEC
T ss_conf 950997769996-----787-899999999811699999987
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.40 E-value=0.014 Score=36.83 Aligned_cols=107 Identities=23% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 44679977986023355777776641388632787213322221111000001122222222222333457554467403
Q gi|254780624|r 66 PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACT 145 (265)
Q Consensus 66 ~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~ 145 (265)
|..-.+.+|||+|+|.|..++..++... ..|+..|+-+.-..-.+-++...+ -+|.+...|..- .+..||++.
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~g---~~~~~Dl~L 147 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLIG---SPPAFDLLL 147 (218)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHH--HHHHHCCCCHHHHHHHHCCHHHCC--CEEEEEECCCCC---CCCCEEEEE
T ss_conf 6310365324415666708899998503--788762788478888530622156--216774313368---986403898
Q ss_pred EEEEECCCHHHHHHHCCCCHHCCCCCEEEE-EECCC
Q ss_conf 664201321344320121000485211776-30554
Q gi|254780624|r 146 LAFGIRNMPHITLVLQEIYRILKCGGRLLV-LEFSE 180 (265)
Q Consensus 146 ~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i-~df~~ 180 (265)
.+-.+-+=+.-.+.++ .++.|+-.|..++ -|..+
T Consensus 148 agDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 148 AGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred EECEECCCHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf 5030028358898899-9999985797799728997
No 236
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=95.34 E-value=0.019 Score=35.93 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=75.8
Q ss_pred HHHHHH--HHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC----CCCCCCCCCCC
Q ss_conf 999985--206446799779860233557777766413886327872133222211110000011----22222222222
Q gi|254780624|r 57 KEAMVT--NLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN----LQDCITFIEAN 130 (265)
Q Consensus 57 r~~~i~--~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~----~~~~i~~~~~d 130 (265)
|+.+-. .+.+... +.++||+-+|+|.+..+.+-+.- .+++-||.+......-.++++... ....+....-+
T Consensus 41 REslFNiv~~~~~i~-~~~~LD~FAGsG~LG~EALSRgA--~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~ 117 (210)
T TIGR00095 41 RESLFNIVILRPEIV-GAHFLDLFAGSGSLGLEALSRGA--KSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLND 117 (210)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHH
T ss_conf 567876999987636-87278854064465376640141--623787368679999999999988871585300000002
Q ss_pred C-CC---CCCCCC-CCCCCEE--EEEECC--CHHHH----HHHCCCCHHCCCCCEEEEEE
Q ss_conf 3-33---457554-4674036--642013--21344----32012100048521177630
Q gi|254780624|r 131 A-ET---LPFEAN-SFDACTL--AFGIRN--MPHIT----LVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 131 a-~~---lp~~d~-sfD~V~~--sf~l~~--~~d~~----~~l~e~~RvLKpGG~~~i~d 177 (265)
+ .. ++-.+- .||.|.. -|.... +...- .+|..+...|+|+|.+++..
T Consensus 118 ~~~~~~~~~~~~ts~~d~iylDPPf~~~~ad~~~~l~l~~~alerl~~~L~~~~~i~ve~ 177 (210)
T TIGR00095 118 AERALLFLAKKQTSPFDIIYLDPPFNTGLADLEAILELLGEALERLNKWLNPKGLIVVEY 177 (210)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 566657765179961147871488887610379999999999998731048785799863
No 237
>PRK11524 putative methyltransferase; Provisional
Probab=95.21 E-value=0.0066 Score=38.92 Aligned_cols=53 Identities=28% Similarity=0.420 Sum_probs=25.5
Q ss_pred CCCCCCCCCC-C-CCCCCCCCCCEEE--EEE-CC---C----------HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 2222222333-4-5755446740366--420-13---2----------13443201210004852117763
Q gi|254780624|r 124 ITFIEANAET-L-PFEANSFDACTLA--FGI-RN---M----------PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 124 i~~~~~da~~-l-p~~d~sfD~V~~s--f~l-~~---~----------~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
.+..+||+.+ | .++|+|+|+|+++ |.+ ++ . .-....++|++|||||+|.+++.
T Consensus 9 ~kIy~gDcle~lk~lpd~SIDLIiTDPPYn~~k~y~~~~d~~~~~~y~~~~~~~l~e~~RvLk~~Gsi~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEKWKEDLFIDWLYEVIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEECCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98995318999853855773879989999888757874677798999999999999999983405745996
No 238
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.20 E-value=0.043 Score=33.64 Aligned_cols=109 Identities=12% Similarity=0.051 Sum_probs=69.0
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CC----HHC-----CCCCCCCCCCCCCCCCCCC-
Q ss_conf 79977986023355777776641388632787213322221111--00----000-----1122222222222333457-
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR--DR----AFK-----ENLQDCITFIEANAETLPF- 136 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~--~r----~~~-----~~~~~~i~~~~~da~~lp~- 136 (265)
.++.+|+==.||-..-..+++++. -+|+|+++|+..++.-= .. ... .-...+|+..+||.-+||-
T Consensus 42 ~~~~rVfVPLCGKSlDm~WLa~qG---~~VvGvELse~Av~~FF~E~~l~~~v~~~~~~~~y~~~~I~i~~GD~F~L~~~ 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCC---CEEEEEEHHHHHHHHHHHHCCCCCEEECCCCCEEEECCCEEEEECCCCCCCCH
T ss_conf 999869996788789899999789---82564310189999999976998455137881288518876996362158620
Q ss_pred CC--CCCCCCEE--EE-EECCCHHHHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 55--44674036--64-201321344320121000485211776305544
Q gi|254780624|r 137 EA--NSFDACTL--AF-GIRNMPHITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 137 ~d--~sfD~V~~--sf-~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
.+ .+||+|.= ++ +| +-+.+++..+.+..+|+||++++++-+..+
T Consensus 119 ~~~lg~~daiYDRAALVAL-P~~mR~~Ya~~L~~ll~~~~~~LLitl~Y~ 167 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred HCCCCCCCEEEEEHHHHCC-CHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 1157640369740225319-989999999999986587770999998647
No 239
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.0098 Score=37.81 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEE
Q ss_conf 9779860233557777766413886327872133222211110000011222222222223334575-544674036642
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE-ANSFDACTLAFG 149 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~-d~sfD~V~~sf~ 149 (265)
..+|||.=||||.-.+.++.-.+.. +++.=|+|+..++..++++... ...+...+..||..+=.+ ...||+|=+-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N-~~~~~~v~n~DAN~lm~~~~~~fd~IDiD-- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLN-SGEDAEVINKDANALLHELHRAFDVIDID-- 128 (380)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHC-CCCCCEEECCHHHHHHHHCCCCCCEEECC--
T ss_conf 7388643555336675453425761-7997158989999999999834-76663255342899987258876378138--
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 013213443201210004852117763
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
-+-.|.-.+..+.|..|.||.+.+.
T Consensus 129 --PFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 --PFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred --CCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf --9999726799999972229889998
No 240
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=95.05 E-value=0.049 Score=33.32 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=55.4
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 67997798602335577777664138863278721332222111100000112222222222233345755446740366
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
.+++.+|||+|||---++....... +++..+|.||...|++....-+...+... +..+.|...-| +..+.|+..
T Consensus 100 ~~~p~sVlDlaCGlNPLa~pwm~~~-~~~~Y~a~DId~~~i~fi~~~l~~l~v~~--~~~~~Dl~~~~-p~~~~DvaL-- 173 (248)
T pfam07091 100 LPPPRSVLDLACGLNPLAVPWMPLA-PDATYHAYDIDRALIEFIRAFLALLGVPG--EVRVRDLLTDP-PAEPADVAL-- 173 (248)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCC-CCCEEEEEECCHHHHHHHHHHHHHCCCCC--CEEEEEECCCC-CCCCCCCHH--
T ss_conf 8998644200026883014233689-98679997077789999999998629876--37987610479-988734004--
Q ss_pred EEECCCHHH
Q ss_conf 420132134
Q gi|254780624|r 148 FGIRNMPHI 156 (265)
Q Consensus 148 f~l~~~~d~ 156 (265)
.|.-+|-.
T Consensus 174 -llK~lp~L 181 (248)
T pfam07091 174 -LLKTLPLL 181 (248)
T ss_pred -HHHHHHHH
T ss_conf -75527789
No 241
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=95.02 E-value=0.054 Score=33.01 Aligned_cols=88 Identities=18% Similarity=0.332 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-C--CCCCCCCCCCEEEEEECCCHHH
Q ss_conf 355777776641388632787213322221111000001122222222222333-4--5755446740366420132134
Q gi|254780624|r 80 GTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-L--PFEANSFDACTLAFGIRNMPHI 156 (265)
Q Consensus 80 GTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-l--p~~d~sfD~V~~sf~l~~~~d~ 156 (265)
|-|.++..+++..+- .+|+++|.++.-++.|++ .|...-+.....|..+ + ..+...+|+|+-+ .--
T Consensus 1 giG~~~iq~ak~~Ga-~~Vi~~~~~~~r~~~a~~----lGa~~~i~~~~~~~~~~i~~~~~~~g~d~vid~------~g~ 69 (131)
T pfam00107 1 GVGLAAVQLAKALGA-ARVIAVDRSEEKLELAKE----LGADHVINYRDEDFVERVRELTGGRGVDVVIDC------VGA 69 (131)
T ss_pred CHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEC------CCC
T ss_conf 958999999998499-879999698899999997----599732353322124556540499776498866------886
Q ss_pred HHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 4320121000485211776305
Q gi|254780624|r 157 TLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 157 ~~~l~e~~RvLKpGG~~~i~df 178 (265)
+..++...+.++|||+++++-.
T Consensus 70 ~~~~~~~~~~~~~~G~iv~~G~ 91 (131)
T pfam00107 70 PATLEQALELLRPGGRVVVVGL 91 (131)
T ss_pred HHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6679999875359978999946
No 242
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=94.98 E-value=0.073 Score=32.16 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=63.0
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHH---HHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 9998520644679977986023355777776---6413886327872133222211110000011222222222223334
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRI---AEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l---~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
+.++-.++| ..|+++|...|-.+..+ .+..+..++|+|+|+--.-... +++. .++|++++||..+.
T Consensus 25 qeii~~~kP-----d~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~--~~i~----~~~I~lieg~s~d~ 93 (202)
T pfam04989 25 QELIWELKP-----DLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNR--PAIE----APRITFIQGSSTDP 93 (202)
T ss_pred HHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH--HHHC----CCCEEEEECCCCCH
T ss_conf 999998599-----989996167662899999999973899879999576443354--3531----68769997685678
Q ss_pred CCCC------CCCCCCE-EEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 5755------4467403-664201321344320121000485211776305
Q gi|254780624|r 135 PFEA------NSFDACT-LAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 135 p~~d------~sfD~V~-~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
..-+ +..+-|. +-=+-|.-.+..+.|+-....++||..+++.|-
T Consensus 94 ~~~~~v~~~~~~~~~vlVilDs~Ht~~hVl~eL~~y~~lv~~GsY~IVeDT 144 (202)
T pfam04989 94 EIIEQVRSLAEPPHPVLVILDSDHTHEHVLAELRAYAPLVSEGSYLVVEDT 144 (202)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 899889998537985899964886568899999987521576889999576
No 243
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=94.77 E-value=0.16 Score=29.96 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=23.7
Q ss_pred CCCCEEEECCHHHHHHHHHHHHH---CCC---CCEEEEECCC---CCCCCCC
Q ss_conf 79977986023355777776641---388---6327872133---2222111
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEA---SDN---RSQIVVADIN---NEMLSVG 111 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~---~~~---~~~v~giD~s---~~Ml~~a 111 (265)
....+|+++|-|||..-+...+. ..+ ..+.++++-- .+.|+.+
T Consensus 56 ~~~f~i~E~GFGtGLNfl~t~~~~~~~~~~~~~L~~~s~E~~Pl~~~~l~~~ 107 (660)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFRQPPARLKRLHFISFEKFPLTRADLARA 107 (660)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHH
T ss_conf 9977999968755799999999997147889758999997998999999999
No 244
>KOG4589 consensus
Probab=94.75 E-value=0.032 Score=34.49 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC-CCCCC--------CCCCCC
Q ss_conf 997798602335577777664138863278721332222111100000112222222222-23334--------575544
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA-NAETL--------PFEANS 140 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~-da~~l--------p~~d~s 140 (265)
++.+|||+||.+|.++.-.-++.+|++.|.|||+-.---- ..+..+++ |..+. .+++..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~------------~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP------------EGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCC------------CCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 8877998167887189999886288742888743311488------------8764014324688889999998679983
Q ss_pred CCCCEEEE-----EECCCHHHHH-------HHCCCCHHCCCCCEEEE
Q ss_conf 67403664-----2013213443-------20121000485211776
Q gi|254780624|r 141 FDACTLAF-----GIRNMPHITL-------VLQEIYRILKCGGRLLV 175 (265)
Q Consensus 141 fD~V~~sf-----~l~~~~d~~~-------~l~e~~RvLKpGG~~~i 175 (265)
.|+|.+-. |+| .-|..+ ++.-....++|+|.+++
T Consensus 137 VdvVlSDMapnaTGvr-~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589 137 VDVVLSDMAPNATGVR-IRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred CCEEEECCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 2188713577876751-243789999999999886321477857999
No 245
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.60 E-value=0.078 Score=31.99 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=77.8
Q ss_pred CEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 779860233--557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 72 YRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 72 ~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
++|+=+|+| .|.++..+.+. +...+|+|+|.+++-++.|.+ .+..+.+ .+.+.+ ...|+|+.+-
T Consensus 1 M~I~IiGlGLiGgSla~alk~~-~~~~~V~g~d~~~~~~~~A~~----~g~id~~----~~~~~i----~~aDlVila~- 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEN-KLISCVYGYDHNEEHEKDALD----LGLVDEI----VEFEEI----KECDVIFLAI- 66 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHC-CCCCEEEEEECCHHHHHHHHH----CCCCCCC----CCHHHC----CCCCEEEEEC-
T ss_conf 9899990087899999999950-998679999599999999998----6998610----673123----6579899917-
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHH---HHHHHHHCCCHHHHHHHHHH--HHHCC-
Q ss_conf 0132134432012100048521177630554455101123456531113---32102542887686578999--99689-
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVI---PQLGRFIAGDEEPYQYLIES--IRRFP- 223 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~ii---P~~g~~~~~~~~~Y~yL~~S--i~~f~- 223 (265)
.+......++++.. ++|+.. |.|.+-.+.++...+.......++ |..|.--+|-..+..-|-+- .--.|
T Consensus 67 --Pv~~~~~~l~~l~~-l~~~~i--itDv~SvK~~i~~~~~~~~~~~fVg~HPmAGsE~sG~~~a~~~LF~~~~~il~p~ 141 (275)
T PRK08507 67 --PVDAIIEILQKLLD-IKENTT--IIDLGSTKAKIIESIPKSIRKNFIAAHPMTGTEFSGPKAAFKGLYKGAVVVLCDL 141 (275)
T ss_pred --CHHHHHHHHHHHHH-CCCCCE--EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf --69999999999860-467888--9834312899999998625688443499788875445441077853985999688
Q ss_pred --C----HHHHHHHHHHCCCCEE
Q ss_conf --9----8999999997599537
Q gi|254780624|r 224 --N----QQDFAAVISAAGFSNV 240 (265)
Q Consensus 224 --~----~~el~~~l~~aGF~~v 240 (265)
+ .+.+.++.+..|.+-+
T Consensus 142 ~~~~~~~~~~~~~l~~~lGa~~~ 164 (275)
T PRK08507 142 EKSGEKHQERAKEIFSGIGMKIV 164 (275)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 88979999999999998199788
No 246
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=94.57 E-value=0.064 Score=32.56 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=72.5
Q ss_pred HHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC----C
Q ss_conf 985206446799779860233-55777776641388632787213322221111000001122222222222333----4
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET----L 134 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~----l 134 (265)
+++.......-+..+|=.||| -|.++...|+..+- ..|+..|.|+-=++.||+ .|..-.|+...-|..+ |
T Consensus 151 AVhTvL~~~~~G~~vlv~GaGPiGlma~AVAKa~GA-~~Vi~~d~neyRleLAkk----~Gat~~vn~~kEd~~k~v~~l 225 (341)
T TIGR00692 151 AVHTVLESDLAGEDVLVIGAGPIGLMAVAVAKAAGA-RNVIVIDKNEYRLELAKK----MGATRVVNVAKEDLVKVVAEL 225 (341)
T ss_pred HHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHH----CCCCEEEECCCCCHHHHHHHH
T ss_conf 444652577688718998577478999999877278-405996586479999987----098658701014768988840
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 57554467403664201321344320121000485211776305
Q gi|254780624|r 135 PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 135 p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
.- .+-+|+++ .++=-++||+++.....+|||+.+|-+
T Consensus 226 t~-geG~Dv~l------EmSGaP~A~~~gL~~~~~gGR~~~Lgl 262 (341)
T TIGR00692 226 TS-GEGVDVVL------EMSGAPKALEQGLDAVANGGRVALLGL 262 (341)
T ss_pred CC-CCCEEEEE------ECCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 38-89647998------648991799999998506880898136
No 247
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=94.47 E-value=0.03 Score=34.63 Aligned_cols=96 Identities=19% Similarity=0.331 Sum_probs=61.4
Q ss_pred CEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--CCC-CCCCCCCEEE
Q ss_conf 779860233-557777766413886327872133222211110000011222222222223334--575-5446740366
Q gi|254780624|r 72 YRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--PFE-ANSFDACTLA 147 (265)
Q Consensus 72 ~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--p~~-d~sfD~V~~s 147 (265)
.+||=+|+| .|.++..+++..+. .+|+++|.++.-++.|++ .|...-|+....|..+. .+. ..-+|+|+-
T Consensus 165 ~~VlV~GaG~vGl~~~~~ak~~Ga-~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~~~~~~~~~~t~~~G~Dvvid- 238 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGMTEGFDVGLE- 238 (341)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-EEEEEEECCHHHHHHHHH----CCCCEEEECCCHHHHHHHHHHHCCCCCEEEEE-
T ss_conf 869998997543299999998499-289999489999998986----49949996885068999999748999769998-
Q ss_pred EEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 4201321344320121000485211776305
Q gi|254780624|r 148 FGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 148 f~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
..-...+++++.++|+|||+++++-+
T Consensus 239 -----~~G~~~~~~~~~~~l~~gG~vv~~G~ 264 (341)
T PRK05396 239 -----MSGAPSAFRQMLDAMNHGGRIAMLGI 264 (341)
T ss_pred -----CCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf -----78989999999998635989999955
No 248
>KOG1269 consensus
Probab=94.38 E-value=0.033 Score=34.41 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC-CCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEE
Q ss_conf 97798602335577777664138863278721332222111100000-112222222222233345-7554467403664
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK-ENLQDCITFIEANAETLP-FEANSFDACTLAF 148 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~-~~~~~~i~~~~~da~~lp-~~d~sfD~V~~sf 148 (265)
..+.||++|+.+.....+++.++. .+--|++++.+.+..++.+-.+ .....+.+...||+...+ +-...|+.+ .++
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv-~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~-~~~ 258 (364)
T KOG1269 181 GVRFLEVVCHAPDLEKVYAEIYRV-LKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLL-KSF 258 (364)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEECCCCHHHHH-HHC
T ss_conf 489876124478699999988503-677716884888876521479720110467363023212301141399887-650
Q ss_pred EECCCH-HHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 201321-34432012100048521177630
Q gi|254780624|r 149 GIRNMP-HITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 149 ~l~~~~-d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
++.++. .+..++...+++++|.++..++.
T Consensus 259 ~~~~~~~~~dl~~~~s~~w~~~~~~~~~~~ 288 (364)
T KOG1269 259 GFEHLKLEKDLALKSSFPWNTPLTRDTITH 288 (364)
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCHHHEEE
T ss_conf 303422234335788665543221212000
No 249
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=94.28 E-value=0.01 Score=37.69 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=49.8
Q ss_pred EEEECCHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 79860233557777766----413886327872133222211110000011222222222223334
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIA----EASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~----~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
.+=|+=||-|-.++.-| ++..+..++|||+|+++.+.-|++-++..|+ .++.|.--|+.++
T Consensus 240 ~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl-~~~~F~aLDsa~f 304 (386)
T TIGR02085 240 QMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGL-ENLSFAALDSAKF 304 (386)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_conf 0320104654127899898764158970443134377899999999987353-3210454457999
No 250
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=94.07 E-value=0.097 Score=31.38 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=70.6
Q ss_pred HHHHHHHHHHCCC---CCCCCEEEECCH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC---
Q ss_conf 9999998520644---679977986023--35577777664138863278721332222111100000112222222---
Q gi|254780624|r 55 FWKEAMVTNLNPR---KSKDYRVLDVAG--GTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF--- 126 (265)
Q Consensus 55 ~Wr~~~i~~l~~~---~~~~~~iLDiGc--GTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~--- 126 (265)
.| +-+-++|+.. .+.+.+||=+|. |-|.++..|+++. .+..|+|.=-=++--+-++ +.|.+.-|+-
T Consensus 133 AW-ElLFDRL~~~~~~~~~~~~lLIiGgAGGVGSI~iQLAR~L-T~ltVIaTASRpEs~~Wv~----~LGAH~VIDHskP 206 (338)
T TIGR02817 133 AW-ELLFDRLGINDPVAGAKRALLIIGGAGGVGSILIQLARQL-TGLTVIATASRPESQEWVL----ELGAHHVIDHSKP 206 (338)
T ss_pred HH-HHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHH----HCCCCEEECCCCC
T ss_conf 99-9988661589768888874789738851789999999985-4964999728578999999----7399188658843
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 222233345755446740366420132134432012100048521177630
Q gi|254780624|r 127 IEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 127 ~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
.....++|.++ +.|.|.| .+..++-++|+..+|+|=|+|.++|
T Consensus 207 L~~ql~~L~l~--~v~~V~S------lT~TDqH~~~ive~laPQGrlaLID 249 (338)
T TIGR02817 207 LKAQLEKLGLE--AVSYVFS------LTHTDQHFKEIVELLAPQGRLALID 249 (338)
T ss_pred HHHHHHHHCCC--CCCEEEC------CCHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 68999982889--9855751------6607899999999856787400002
No 251
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.04 E-value=0.097 Score=31.39 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=59.5
Q ss_pred CEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 779860233--557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 72 YRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 72 ~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
++|+=+|+| .|.++..+.+. +.+|+|+|.+++-++.|+++ +. |+....+.+. + ...|+|+.+-
T Consensus 2 mkI~IiGlGLIGgSla~al~~~---~~~V~g~d~~~~~~~~A~~~----g~---id~~~~~~~~--~--~~aDliila~- 66 (280)
T PRK07417 2 MNIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIER----GL---VDEASTDLSL--L--KDCDLVILAL- 66 (280)
T ss_pred CEEEEEECCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHC----CC---CCEECCCHHH--H--CCCCEEEECC-
T ss_conf 7899993185799999999968---99799997999999999986----99---7520278746--0--5799899879-
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 013213443201210004852117763055445510112345
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYD 191 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~ 191 (265)
.+......++++...++|+. +|.|.+-.+..+...+-.
T Consensus 67 --Pv~~~~~~~~~~~~~l~~~~--iitDv~SvK~~i~~~~~~ 104 (280)
T PRK07417 67 --PIGLLLPPSEELIPALPPEA--IVTDVGSVKEPIVEAWEK 104 (280)
T ss_pred --CHHHHHHHHHHHHHHCCCCC--EEEECHHHHHHHHHHHHH
T ss_conf --74778999999986478984--899652230789999986
No 252
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.02 E-value=0.082 Score=31.84 Aligned_cols=102 Identities=24% Similarity=0.217 Sum_probs=61.3
Q ss_pred EEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 79860233--5577777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 73 RVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 73 ~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
+|+=+|+| .|.++..+.++ +...+|+|+|.+++-++.|++. +... -...+..+. -..+|+|+++-
T Consensus 8 ~I~IiGlGLIGgSlA~alk~~-~~~~~I~g~d~~~~~l~~A~~~----g~id---~~~~~~~e~---~~~~DlIilat-- 74 (307)
T PRK07502 8 RVALIGLGLIGSSLARAIRRQ-GLAGEIVGAARSAETRARAREL----GLGD---RVTTSAAEA---VKGADLVILCV-- 74 (307)
T ss_pred EEEEEEECHHHHHHHHHHHHC-CCCCEEEEEECCHHHHHHHHHC----CCCC---HHCCCHHHH---HCCCCEEEEEC--
T ss_conf 689992787999999999854-9985799984999999999986----9975---112777664---04589799917--
Q ss_pred CCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 1321344320121000485211776305544551011234
Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIY 190 (265)
Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~ 190 (265)
.+......++++...++|+. +|.|.+-.+..+.+.+.
T Consensus 75 -Pv~~~~~vl~~l~~~l~~~~--ivTDvgSvK~~I~~~~~ 111 (307)
T PRK07502 75 -PVGASGAVAAEIAPHLKPGA--IVTDVGSVKASVIAAMA 111 (307)
T ss_pred -CHHHHHHHHHHHHHHCCCCC--EEEECCCCHHHHHHHHH
T ss_conf -89999999999985558996--89966321189999999
No 253
>PRK13699 putative methylase; Provisional
Probab=93.99 E-value=0.022 Score=35.53 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=23.6
Q ss_pred CCCCCCCC-C-CCCCCCCCCCEEE--E--EECC-----C------HHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 22222333-4-5755446740366--4--2013-----2------1344320121000485211776
Q gi|254780624|r 126 FIEANAET-L-PFEANSFDACTLA--F--GIRN-----M------PHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 126 ~~~~da~~-l-p~~d~sfD~V~~s--f--~l~~-----~------~d~~~~l~e~~RvLKpGG~~~i 175 (265)
+++||+.+ | .++|+|+|+|+++ | ++++ + .-....+.|++|+|||+|.+++
T Consensus 4 ii~GDcle~l~~lpd~SVDliiTDPPY~~g~~~~~~~~~~~d~~~ew~~~~~~e~~Rvlk~~g~~~~ 70 (227)
T PRK13699 4 FILGNCVDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred EEHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4330199999528887729799898998898788997445762089999999999999568816999
No 254
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.29 Score=28.34 Aligned_cols=171 Identities=15% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCC---CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEE
Q ss_conf 977986023355777776641388---632787213322221111000001122222222222333-4575544674036
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDN---RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFEANSFDACTL 146 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~---~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~d~sfD~V~~ 146 (265)
...++|+|+|+-.-+..+...+.+ ....+.+|+|...|+...+-+......-.|.-+++|.+. |....+.=-.+ +
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl-~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL-F 157 (321)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCEEE-E
T ss_conf 654897168962889999997521377403554022289999899999986799767631256888875156887289-9
Q ss_pred EE---EECCCH--HHHHHHCCCCHHCCCCCEEEE-EECCCCCCCHHHHHHH-------HHHHCHHHHHHHHHCCCHH--H
Q ss_conf 64---201321--344320121000485211776-3055445510112345-------6531113321025428876--8
Q gi|254780624|r 147 AF---GIRNMP--HITLVLQEIYRILKCGGRLLV-LEFSEVQGPVFKKIYD-------MWSFKVIPQLGRFIAGDEE--P 211 (265)
Q Consensus 147 sf---~l~~~~--d~~~~l~e~~RvLKpGG~~~i-~df~~p~~~~~~~~~~-------~y~~~iiP~~g~~~~~~~~--~ 211 (265)
.| .|-|+. +....|..+..+|.||-.+++ +|.-+|.. .+...|+ .+-.+++..+-+.+.++-+ .
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae-~Le~AYdDp~gVTa~FnlNvLa~lNr~f~~nFD~~d 236 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAE-RLEAAYDDPQGVTAEFNLNVLAHLNRVFGGNFDVDD 236 (321)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 9836533688867899999999842897666998121268788-877741585133899878899998998636777210
Q ss_pred HHHH--HHH----HHHC---------------------------------CCHHHHHHHHHHCCCCEEEEE
Q ss_conf 6578--999----9968---------------------------------998999999997599537999
Q gi|254780624|r 212 YQYL--IES----IRRF---------------------------------PNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 212 Y~yL--~~S----i~~f---------------------------------~~~~el~~~l~~aGF~~v~~~ 243 (265)
|+|- +++ |+++ .+..++.+.+.++||+-|++.
T Consensus 237 feh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~Kfslq~irq~laa~gl~~v~~w 307 (321)
T COG4301 237 FEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGETILTEISRKFSLQAIRQQLAAAGLEPVQKW 307 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCEEEHHHHHHCCHHHHHHHHHHCCCEEEEEH
T ss_conf 25576551057789998631770589963755135337776210024450798999999985697473100
No 255
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.18 Score=29.68 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=35.5
Q ss_pred CCCEEEECCHHHHHHHHHHHHHC----C---CCCEEEEECCCCCCCCCCCCCHHCC
Q ss_conf 99779860233557777766413----8---8632787213322221111000001
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEAS----D---NRSQIVVADINNEMLSVGRDRAFKE 118 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~----~---~~~~v~giD~s~~Ml~~a~~r~~~~ 118 (265)
.+..++++|.|+|.++..+++.. + ...++.-|++|++....=+++++..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHCEEEEEECCHHHHHHHHHHHHCC
T ss_conf 98448996799676999999999875978773055999925989999999987433
No 256
>KOG1596 consensus
Probab=93.59 E-value=0.1 Score=31.27 Aligned_cols=99 Identities=14% Similarity=0.286 Sum_probs=65.1
Q ss_pred HHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 520644679977986023355777776641388632787213322----2211110000011222222222223334575
Q gi|254780624|r 62 TNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNE----MLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265)
Q Consensus 62 ~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~----Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265)
+.+..++ ..+||=+|.+.|.....++..+++.+-|+++++|+- .+..|++| .||--+..||.. |.+
T Consensus 150 dnihikp--GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArh-P~K 219 (317)
T KOG1596 150 DNIHIKP--GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARH-PAK 219 (317)
T ss_pred CCEEECC--CCEEEEEECCCCCEEEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCC-------CCCEEEEECCCC-CHH
T ss_conf 0125358--866999633678433300003077743999984355328899876426-------870024504778-500
Q ss_pred ----CCCCCCCEEEEEECCCHHHHH--H-HCCCCHHCCCCCEEEE
Q ss_conf ----544674036642013213443--2-0121000485211776
Q gi|254780624|r 138 ----ANSFDACTLAFGIRNMPHITL--V-LQEIYRILKCGGRLLV 175 (265)
Q Consensus 138 ----d~sfD~V~~sf~l~~~~d~~~--~-l~e~~RvLKpGG~~~i 175 (265)
-.-.|+|++ .++.+++ . .=++..-||+||-++|
T Consensus 220 YRmlVgmVDvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596 220 YRMLVGMVDVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred EEEEEEEEEEEEC-----CCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 3566105778962-----689703445453346665026871899
No 257
>pfam02636 DUF185 Uncharacterized ACR, COG1565. This family contains several uncharacterized proteins. One member has been described as an ATP synthase beta subunit transcription termination factor rho protein.
Probab=93.48 E-value=0.23 Score=28.94 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=35.1
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCC-------CCCEEEEECCCCCCCCCCCCCHHC
Q ss_conf 997798602335577777664138-------863278721332222111100000
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASD-------NRSQIVVADINNEMLSVGRDRAFK 117 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~-------~~~~v~giD~s~~Ml~~a~~r~~~ 117 (265)
.+..|+++|+|+|.++..+.+... ...+++.+++|+.+.+.-++++..
T Consensus 17 ~~~~ivE~G~G~G~L~~dil~~l~~~~p~~~~~~~y~lvE~s~~L~~~Q~~~L~~ 71 (240)
T pfam02636 17 PPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQKERLAG 71 (240)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 9708999799718999999999987594657534699980899999999997521
No 258
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=93.22 E-value=0.14 Score=30.38 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=48.5
Q ss_pred CCCCCEEEEEEC-----CCHH--HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHH
Q ss_conf 467403664201-----3213--443201210004852117763055445510112345653111332102542887686
Q gi|254780624|r 140 SFDACTLAFGIR-----NMPH--ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPY 212 (265)
Q Consensus 140 sfD~V~~sf~l~-----~~~d--~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y 212 (265)
.||+|+| +++- |..| ..++++.+++.|+|||.+++ | |+. |..|.+.- .+..-+ .+.|
T Consensus 1 ~fD~i~c-lSvtkWIHLN~GD~Gl~~~f~~~~~~l~pgg~lil-E---pQ~------w~sY~k~k--kl~~~~---~~ny 64 (110)
T pfam06859 1 EFDVILC-LSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILIL-E---PQP------WDSYKKRK--KLSETI---YKNY 64 (110)
T ss_pred CCCEEEE-EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-E---CCC------CHHHHHHH--HCCHHH---HHHH
T ss_conf 9658999-66202455546428899999999996188988999-6---788------46688773--147999---8535
Q ss_pred HHHHHHHHHCCCHHHHHHHHH--HCCCCEEEEEECC
Q ss_conf 578999996899899999999--7599537999855
Q gi|254780624|r 213 QYLIESIRRFPNQQDFAAVIS--AAGFSNVSFTNYT 246 (265)
Q Consensus 213 ~yL~~Si~~f~~~~el~~~l~--~aGF~~v~~~~~~ 246 (265)
++|+ ..|+.+...|. +.||..++.....
T Consensus 65 ----~~I~--~rPd~F~~yLl~~evGF~s~e~~~~~ 94 (110)
T pfam06859 65 ----ERIK--LKPDQFEEYLLSPEVGFSSYELVGVP 94 (110)
T ss_pred ----HHHE--ECHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf ----5427--78788899980546680789994378
No 259
>KOG1562 consensus
Probab=92.91 E-value=0.067 Score=32.43 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC--C-CCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 4467997798602335577777664138863278721332222111100000--1-1222222222223334--575544
Q gi|254780624|r 66 PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK--E-NLQDCITFIEANAETL--PFEANS 140 (265)
Q Consensus 66 ~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~--~-~~~~~i~~~~~da~~l--p~~d~s 140 (265)
-..+++.++|=||-|-|-+....+++ +.-..+.-+|+-+..++..++=... . --.++|....||.-.+ ..+.+.
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562 117 CSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCCCCCEEEEEECCCCCCEEEEECC-CCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 45789874799944884130113103-46010675433678999999873887536789714899556899998703697
Q ss_pred CCCCEEEEEECCCHHH---------HHHHCCCCHHCCCCCEEEEEE
Q ss_conf 6740366420132134---------432012100048521177630
Q gi|254780624|r 141 FDACTLAFGIRNMPHI---------TLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 141 fD~V~~sf~l~~~~d~---------~~~l~e~~RvLKpGG~~~i~d 177 (265)
||+|..- ..|+ +..++-+.+.|||||++++..
T Consensus 196 ~dVii~d-----ssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562 196 FDVIITD-----SSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CEEEEEE-----CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 4189971-----6776755889888889999998517992799732
No 260
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=92.78 E-value=0.08 Score=31.93 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=41.9
Q ss_pred EEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCHHCCCC
Q ss_conf 7986023355777776641388-63278721332222111100000112
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDN-RSQIVVADINNEMLSVGRDRAFKENL 120 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s~~Ml~~a~~r~~~~~~ 120 (265)
.++|+|+.-|..+..++++.+. .++|+++++.+.+.+..+++....+.
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~ 49 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGL 49 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 9787017704799999974178873189986895799999986203787
No 261
>pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction.
Probab=92.76 E-value=0.66 Score=26.01 Aligned_cols=201 Identities=17% Similarity=0.156 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHH----HHHHHH--CCCCCEEEEECC-
Q ss_conf 9999876342115766761480179999998520644679977986023355777----776641--388632787213-
Q gi|254780624|r 31 NHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVA----FRIAEA--SDNRSQIVVADI- 103 (265)
Q Consensus 31 ~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~----~~l~~~--~~~~~~v~giD~- 103 (265)
..+|.++.+-+-+. ++.+ .+.+++.+.- .+.-+|+|++.|.|.-. ..|+.+ .+|..+|||+..
T Consensus 81 ~~~~~~~~P~~kfa-~~ta-------NqAIleA~~g--~~~vHIIDf~i~~G~QWp~Liq~LA~R~~gpp~lRIT~i~~~ 150 (371)
T pfam03514 81 YKLFYEVSPYLKFG-HFTA-------NQAILEAFEG--EERVHIIDFDIGQGLQWPSLIQALASRPGGPPHLRITGIGSP 150 (371)
T ss_pred HHHHHHHCCHHHHH-HHHH-------HHHHHHHHCC--CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 99999859899999-9999-------9999999758--971477613677764078999999519999976788222386
Q ss_pred ---CCCCCCCCCCCHHCCCCCCCCCCC----CC-CCCC-----CCCCCCCCCCCEEEEEECCCHHH----HHHHCCCCHH
Q ss_conf ---322221111000001122222222----22-2333-----45755446740366420132134----4320121000
Q gi|254780624|r 104 ---NNEMLSVGRDRAFKENLQDCITFI----EA-NAET-----LPFEANSFDACTLAFGIRNMPHI----TLVLQEIYRI 166 (265)
Q Consensus 104 ---s~~Ml~~a~~r~~~~~~~~~i~~~----~~-da~~-----lp~~d~sfD~V~~sf~l~~~~d~----~~~l~e~~Rv 166 (265)
+..-++...+|+.+.--.-+|.|. .. +.++ +...++..=+|.|.|.||++.+. ...+=...|-
T Consensus 151 ~~~~~~~l~~~g~rL~~fA~~l~vpFef~~v~~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~~~~L~~ir~ 230 (371)
T pfam03514 151 QFSSAEELEETGDRLAQFADSLGVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESTFLRLVKS 230 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCHHHCCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 66875899999999999999849984999750398344999993988997589972564255766665468999999997
Q ss_pred CCCCCEEEEE-ECCCCCCCHHHHH---HHHHHHCHHHHHHHHHCCCHHH-----HHHHHHHHHH------------CCCH
Q ss_conf 4852117763-0554455101123---4565311133210254288768-----6578999996------------8998
Q gi|254780624|r 167 LKCGGRLLVL-EFSEVQGPVFKKI---YDMWSFKVIPQLGRFIAGDEEP-----YQYLIESIRR------------FPNQ 225 (265)
Q Consensus 167 LKpGG~~~i~-df~~p~~~~~~~~---~~~y~~~iiP~~g~~~~~~~~~-----Y~yL~~Si~~------------f~~~ 225 (265)
|+|...+++- |-++-...++..+ ...|.-.+ =-+..-+..+... -.+|..-|.+ .-..
T Consensus 231 L~P~vv~lvE~ea~~n~~~F~~RF~eal~yYsalF-DsLea~~~~~s~~R~~vE~~~l~~eI~niVa~eG~~R~eR~e~~ 309 (371)
T pfam03514 231 LNPKVVTLVEQEANHNSAPFLARFVEALHYYSALF-DSLEATLPRDSEERRKVERELLGREIVNVVACEGAERVERHETF 309 (371)
T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 59978999973788888307899999999998999-96321379998899999999999999999815787621238867
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999999759953799
Q gi|254780624|r 226 QDFAAVISAAGFSNVSF 242 (265)
Q Consensus 226 ~el~~~l~~aGF~~v~~ 242 (265)
+++...|+.+||+.+..
T Consensus 310 ~~W~~r~~~aGF~~~~l 326 (371)
T pfam03514 310 GKWRERMRRAGFRPVPL 326 (371)
T ss_pred HHHHHHHHHCCCEECCC
T ss_conf 79999999687983676
No 262
>KOG2918 consensus
Probab=92.66 E-value=0.31 Score=28.12 Aligned_cols=171 Identities=12% Similarity=0.181 Sum_probs=78.0
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCE
Q ss_conf 6799779860233557777766413-886327872133222211110000011222222-22222333457554467403
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEAS-DNRSQIVVADINNEMLSVGRDRAFKENLQDCIT-FIEANAETLPFEANSFDACT 145 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~-~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~-~~~~da~~lp~~d~sfD~V~ 145 (265)
......|+-+|||+-.+...+.... .+..+.+-+|+++.--.....+.... +..-+. ...-|.. ..+-.++.+
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~-~s~~l~~~~~eD~~----~~s~~~l~s 159 (335)
T KOG2918 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPE-LSSILLGLHDEDVV----DLSGTDLHS 159 (335)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCC-HHHHHHCCCCCCCC----CCCCCEECC
T ss_conf 5786599973777551233122047767632898237289887776304681-56666400114532----368641116
Q ss_pred EEEEECCCHHHHHHHCCCCHHCCCCCE------EEEEEC----CCCCC--CHHHHHHHHHHHCH-------HH--HHHHH
Q ss_conf 664201321344320121000485211------776305----54455--10112345653111-------33--21025
Q gi|254780624|r 146 LAFGIRNMPHITLVLQEIYRILKCGGR------LLVLEF----SEVQG--PVFKKIYDMWSFKV-------IP--QLGRF 204 (265)
Q Consensus 146 ~sf~l~~~~d~~~~l~e~~RvLKpGG~------~~i~df----~~p~~--~~~~~~~~~y~~~i-------iP--~~g~~ 204 (265)
-.|.+... |+. -++|+-+.|++.|. ++|.|- -.|+. .+++++-+.+.... -| ..|+.
T Consensus 160 ~~Y~~~g~-DLr-dl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~v 237 (335)
T KOG2918 160 GRYHLIGC-DLR-DLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKV 237 (335)
T ss_pred CCEEEECC-CHH-HHHHHHHHHHHCCCCCCCCEEEHHHHHHEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 76026526-603-3699999987506686766134411453131688889999999985777618987505777838999
Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 42887686578999996899899999999759953799985
Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~ 245 (265)
...+-....---.++..+++.|.....+.++||+.|..-++
T Consensus 238 M~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918 238 MLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEHHHH
T ss_conf 99988854997762432456899999998668752421329
No 263
>PRK13699 putative methylase; Provisional
Probab=92.61 E-value=0.091 Score=31.57 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=7.0
Q ss_pred HHHHHHCCCCHHC-CCCC
Q ss_conf 3443201210004-8521
Q gi|254780624|r 155 HITLVLQEIYRIL-KCGG 171 (265)
Q Consensus 155 d~~~~l~e~~RvL-KpGG 171 (265)
-|...++.+.+.. +||+
T Consensus 148 KPv~L~e~lI~~~S~~gd 165 (227)
T PRK13699 148 KPVTSLQPLIESFTHPNA 165 (227)
T ss_pred CCHHHHHHHHHHCCCCCC
T ss_conf 929999999995599999
No 264
>pfam05430 DUF752 Protein of unknown function (DUF752). This family contains several uncharacterized bacterial proteins with no known function.
Probab=92.57 E-value=0.097 Score=31.37 Aligned_cols=88 Identities=23% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCEE-EEEECCCHH--HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHH
Q ss_conf 2222222333-4575544674036-642013213--44320121000485211776305544551011234565311133
Q gi|254780624|r 124 ITFIEANAET-LPFEANSFDACTL-AFGIRNMPH--ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIP 199 (265)
Q Consensus 124 i~~~~~da~~-lp~~d~sfD~V~~-sf~l~~~~d--~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP 199 (265)
+++..|||.+ |+--+..+|++.. +|+-..-|+ -+..++++.|.++|||++.- |+
T Consensus 33 L~L~~GDa~~~l~~l~~~~DawflDgFsP~~nPemWs~~~f~~i~~~~~~~~~l~T--ys-------------------- 90 (124)
T pfam05430 33 LDLWFGDARAALPELDFKADAWFLDGFSPAKNPEMWTVEFFALLARRSKPGGTLAT--YS-------------------- 90 (124)
T ss_pred EEEEECCHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE--EE--------------------
T ss_conf 99996409999884623010999779895318103219999999997268988998--75--------------------
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEE
Q ss_conf 21025428876865789999968998999999997599537999855664999999811
Q gi|254780624|r 200 QLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKC 258 (265)
Q Consensus 200 ~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp 258 (265)
....+..-|+++||+ |+...=.++==-+..|+||
T Consensus 91 ------------------------~a~~Vr~~L~~aGF~-v~k~~G~g~KR~ml~a~kp 124 (124)
T pfam05430 91 ------------------------SAGFVRRGLIAAGFH-VGKRPGFGRKREMLVASKP 124 (124)
T ss_pred ------------------------CCHHHHHHHHHCCCE-EEECCCCCCCCCCEEEECC
T ss_conf ------------------------568999999987988-9978989988777688593
No 265
>PRK11524 putative methyltransferase; Provisional
Probab=92.55 E-value=0.089 Score=31.64 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=5.9
Q ss_pred CCHHHHHHHHH
Q ss_conf 99899999999
Q gi|254780624|r 223 PNQQDFAAVIS 233 (265)
Q Consensus 223 ~~~~el~~~l~ 233 (265)
++.|||.+.-+
T Consensus 256 ~~~~~~~~~~~ 266 (284)
T PRK11524 256 YSAEELAKVKK 266 (284)
T ss_pred CCHHHHHHHHC
T ss_conf 65889998871
No 266
>KOG2793 consensus
Probab=92.33 E-value=0.17 Score=29.80 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=51.3
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC----CCCCCCCC---CCCCCCCCCCCCCCC-C
Q ss_conf 997798602335577777664138863278721332222111100000----11222222---222223334575544-6
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK----ENLQDCIT---FIEANAETLPFEANS-F 141 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~----~~~~~~i~---~~~~da~~lp~~d~s-f 141 (265)
+..+||++|+|||......+.... ++++.-|+..-+......+... ......+. +..+.+....+.-.. |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHC--CEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCC
T ss_conf 640589966875589999998736--645127750267888886656566664037823699874688655755268765
Q ss_pred CCCEEEEE---ECCCHHHHHHHCCCCHHCCCCCE
Q ss_conf 74036642---01321344320121000485211
Q gi|254780624|r 142 DACTLAFG---IRNMPHITLVLQEIYRILKCGGR 172 (265)
Q Consensus 142 D~V~~sf~---l~~~~d~~~~l~e~~RvLKpGG~ 172 (265)
|+|..+-+ .+.+++..+.++ -.|-.+|.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla---~ll~~~~~ 194 (248)
T KOG2793 164 DLILASDVVYEEESFEGLVKTLA---FLLAKDGT 194 (248)
T ss_pred CEEEEEEEEECCCCCHHHHHHHH---HHHHCCCE
T ss_conf 57998530551776146999999---99743884
No 267
>KOG2920 consensus
Probab=92.06 E-value=0.075 Score=32.11 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 977986023355777776641388632787213322221
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLS 109 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~ 109 (265)
+.+|||+|||+|........... ..+...|++..-++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920 117 GKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred CCEEEECCCCCCCCCHHHHHHCC--CEEEEEECCHHHEE
T ss_conf 75568637864564166664035--32334733511246
No 268
>pfam11312 DUF3115 Protein of unknown function (DUF3115). This eukaryotic family of proteins has no known function.
Probab=92.03 E-value=0.3 Score=28.23 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=65.2
Q ss_pred CCCEEEECCHHHHHHHHHHHH----------HCCCCCEEEEECCCCCC--CCCCCCCHHCC-------CCCCCCCCCCCC
Q ss_conf 997798602335577777664----------13886327872133222--21111000001-------122222222222
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAE----------ASDNRSQIVVADINNEM--LSVGRDRAFKE-------NLQDCITFIEAN 130 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~----------~~~~~~~v~giD~s~~M--l~~a~~r~~~~-------~~~~~i~~~~~d 130 (265)
+..+||=||.|.|.-...++- ..++..+|+.|||.+=- ++.-..-+... .-.-++.|++.|
T Consensus 79 ~~~~VlcIGGGAgaElvAla~~~~~~~~~~~~~~~~l~it~vDiAdWs~VV~~L~~~i~s~~~~~~~~~~~~~v~F~~~D 158 (288)
T pfam11312 79 STLNVLCIGGGAGAELVALAAVFRLSREHLSKSPSGLSVTLVDIADWSNVVDRLATAIRSPWVPQSIEADRFNVKFRQGD 158 (288)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHCEEEEEECC
T ss_conf 77656997888238999999998742431578888861789974256999999986435889866688203025466544
Q ss_pred CCCCCCCC------CCCCCCEEEEEEC-----CCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 33345755------4467403664201-----321344320121000485211776305
Q gi|254780624|r 131 AETLPFEA------NSFDACTLAFGIR-----NMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 131 a~~lp~~d------~sfD~V~~sf~l~-----~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
+..++-++ .+-+.||.-|.+. ..+...+.|..+-..++||-.++|+|-
T Consensus 159 vL~~~~~~l~~l~~~~~~LiTLlFTlNELFs~s~~kTt~FLl~Lt~~~~~GslLLVvdS 217 (288)
T pfam11312 159 VLSLSKDELIGLLGDKLDLVTLLFTLNELFTESRAKTTKFLLRLTAQCKPGSLLLIVDS 217 (288)
T ss_pred CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 01378466653047886130388787898764718899999999854799958999868
No 269
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=91.79 E-value=0.34 Score=27.91 Aligned_cols=112 Identities=20% Similarity=0.335 Sum_probs=62.1
Q ss_pred HHHHHHHHHH---HCC--CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCCCCCHHCCCCCCCC
Q ss_conf 7999999852---064--4679977986023355777776641388632787213322----221111000001122222
Q gi|254780624|r 54 RFWKEAMVTN---LNP--RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNE----MLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 54 r~Wr~~~i~~---l~~--~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~----Ml~~a~~r~~~~~~~~~i 124 (265)
+.|++++-.. +.+ ..+.-.-|+|.-.|-|-++..|... .|.-...-+. -|-+ +-..|+-.
T Consensus 344 ~~Wk~~V~~Y~~l~~~~i~~~~~RNVMDMnA~~GGFAAAL~~~-----~vWVMNVVP~~~~nTL~v----IydRGLiG-- 412 (506)
T pfam03141 344 ELWKRRVSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDD-----PVWVMNVVPVDSPDTLPV----IYDRGLIG-- 412 (506)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCC-----CEEEEEECCCCCCCCCCE----EEECCCCC--
T ss_conf 9999999999987402255676012221244421588986379-----804998355899987545----87544210--
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEE---CCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 22222233345755446740366420---132134432012100048521177630
Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTLAFGI---RNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~sf~l---~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
..+-=.|.++-...+||++.....+ ++=-+.+-.+-||-|+|+|+|.++|-|
T Consensus 413 -~yHDWCE~FsTYPRTYDLlHA~~lfS~~~~rC~~~dillEMDRILRP~G~vIiRD 467 (506)
T pfam03141 413 -IYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRD 467 (506)
T ss_pred -EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf -1002245578888507777353234776178658999988876006881499946
No 270
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=91.27 E-value=0.21 Score=29.17 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=59.1
Q ss_pred CCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99779860233-5577777664138863278721332222111100000112222222-222233345755446740366
Q gi|254780624|r 70 KDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF-IEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 70 ~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~-~~~da~~lp~~d~sfD~V~~s 147 (265)
++.+++=+|.| .|.-+...+...+ ++|+.+|.++.-++..++.. ..++.. ...+.+.+.-.-..+|+|..+
T Consensus 19 ~pa~vvViG~Gv~G~~A~~~A~~lG--a~V~v~D~~~~~l~~~~~~~-----~~~v~~~~~~~~~~l~~~i~~aDvvIga 91 (150)
T pfam01262 19 PPAKVVVIGGGVVGLGAAATAKGLG--APVTILDVRPERLEQLDSLF-----AEFVETDIFSNCEYLAEAIAEADLVIGT 91 (150)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHC-----CCCCCCHHHCCHHHHHHHHHHCCEEEEE
T ss_conf 6777999898789999999998679--98999729999999999864-----7620016653799999997438799972
Q ss_pred EEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 4201321344320121000485211776
Q gi|254780624|r 148 FGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 148 f~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
-.+-.-.-|.-.-+++.+-+|||..++-
T Consensus 92 vl~pg~~aP~lIt~~mv~~MkpGsVIVD 119 (150)
T pfam01262 92 VLIPGARAPKLVTREMVKTMKPGSVIVD 119 (150)
T ss_pred EECCCCCCCCEECHHHHHHHCCCCEEEE
T ss_conf 0317886992207999984479939999
No 271
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=90.63 E-value=0.26 Score=28.65 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=59.6
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC---CCCCCHHCC-----CCCCCCCCCCC
Q ss_conf 9998520644679977986023355777776641388632787213322221---111000001-----12222222222
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLS---VGRDRAFKE-----NLQDCITFIEA 129 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~---~a~~r~~~~-----~~~~~i~~~~~ 129 (265)
+.+.+.+..+.+...+|||.-.|-|.-++.++... ++|+.++=|+-+-. -|-+|+... ....+++++++
T Consensus 63 e~l~KAvG~k~~~~p~VlDATAGLG~DafiLAsLG---~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~g 139 (235)
T pfam04445 63 EAIAKAVGIKGGYLPTVLDATAGLGRDAFVLASLG---CRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHG 139 (235)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECC
T ss_conf 58999866788999838987877578899998189---969999788999999999999987481557999962899838
Q ss_pred CCCC-CCCCCCCCCCCEE
Q ss_conf 2333-4575544674036
Q gi|254780624|r 130 NAET-LPFEANSFDACTL 146 (265)
Q Consensus 130 da~~-lp~~d~sfD~V~~ 146 (265)
|+.+ ++-...++|+|..
T Consensus 140 ds~~~l~~~~~~~DvIYL 157 (235)
T pfam04445 140 SSADQLEPNIDQPDVVYL 157 (235)
T ss_pred CHHHHHHHCCCCCCEEEE
T ss_conf 879997524689878997
No 272
>pfam05711 TylF Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex.
Probab=90.50 E-value=1.5 Score=23.79 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=70.5
Q ss_pred CCHHHHH-HHHHHHHCCCCCCCCEEEECCHHHHHHHHHH---HHHCCC-CCEEEEECCCCCCCCCCC-------------
Q ss_conf 8017999-9998520644679977986023355777776---641388-632787213322221111-------------
Q gi|254780624|r 51 GLHRFWK-EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRI---AEASDN-RSQIVVADINNEMLSVGR------------- 112 (265)
Q Consensus 51 G~~r~Wr-~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l---~~~~~~-~~~v~giD~s~~Ml~~a~------------- 112 (265)
|..|.+- +++++.+.-..-+ .-+.+.|+--|-.+..+ .+.++. .-+|++.|-=+.|-+-..
T Consensus 56 g~~RL~nl~~~ve~Vi~~~Ip-GDfVEcGVWrGGs~ilm~~~L~~~g~~~R~V~lfDTFeGmp~pt~~d~~~d~~~~~~~ 134 (249)
T pfam05711 56 GLKRLDNLQQCVERVLRDGVP-GDFIETGVWRGGACIFMRGVLAAYGVTDRTVWVADSFAGVPAPDEDDHPLDREMRLHE 134 (249)
T ss_pred CHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 799999999999999975999-7579975434799999999999708878849997157898999711243323677764
Q ss_pred -------------CCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC----CCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf -------------00000112-2222222222333457554467403664201----32134432012100048521177
Q gi|254780624|r 113 -------------DRAFKENL-QDCITFIEANAETLPFEANSFDACTLAFGIR----NMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 113 -------------~r~~~~~~-~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~----~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
++..+.++ .++|+|+.|..++. +++..-+-| ++ || ..+....+|..+|--|.|||.++
T Consensus 135 ~~~~~~~s~e~Vk~Nf~~~~l~dd~V~fikG~f~DT-Lp~~~~~~I--a~-lrlD~D~YeSt~~~Le~lypkl~~GG~ii 210 (249)
T pfam05711 135 YNEVLAVPLETVRENFARYGLLDDQVRFLPGWFKDT-LPTAPIERL--AV-LRLDGDLYESTMDALTNLYPKLSPGGFVI 210 (249)
T ss_pred HCCHHCCCHHHHHHHHHHHCCCCCCEEEECCCHHHH-CCCCCCCCE--EE-EEEECCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 140323989999999997068854517955652320-154884527--89-99524311889999999734068882899
Q ss_pred EEECCC
Q ss_conf 630554
Q gi|254780624|r 175 VLEFSE 180 (265)
Q Consensus 175 i~df~~ 180 (265)
|-|+..
T Consensus 211 iDDY~~ 216 (249)
T pfam05711 211 VDDYCI 216 (249)
T ss_pred EECCCC
T ss_conf 926896
No 273
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=90.31 E-value=0.44 Score=27.14 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=60.3
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 67997798602335577777664138863278721332222111100000112222222222233345755446740366
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
...+++.+|+|.-+|-++..|.++. ..|++||.-+ |-. .+.. ...|+.+..|+....-+...+|-++|-
T Consensus 208 l~~Gm~aVDLGAaPGGWT~qLv~rg---~~V~AVDnG~-m~~----~L~~---~~~V~H~~~dgf~f~P~~~~vdwlVCD 276 (356)
T PRK11760 208 LASGMRAVDLGACPGGWTYQLVRRG---MFVTAVDNGP-MAE----SLMD---TGQVEHLRADGFKFRPTRKNVDWLVCD 276 (356)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCC---CEEEEECCCC-CCH----HHHC---CCCEEEEECCCEEECCCCCCEEEEEEE
T ss_conf 1699758755869970589999779---8899865876-787----5752---887578814670563699852089970
Q ss_pred EEECCCHHHHHHHCCCCHHCCCC
Q ss_conf 42013213443201210004852
Q gi|254780624|r 148 FGIRNMPHITLVLQEIYRILKCG 170 (265)
Q Consensus 148 f~l~~~~d~~~~l~e~~RvLKpG 170 (265)
. +..|.++.+=|.+.|..|
T Consensus 277 m----vekP~rva~lm~~Wl~~g 295 (356)
T PRK11760 277 M----VEKPARVAELMAQWLVNG 295 (356)
T ss_pred C----CCCHHHHHHHHHHHHHCC
T ss_conf 5----368899999999987556
No 274
>KOG1227 consensus
Probab=90.17 E-value=0.098 Score=31.36 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH
Q ss_conf 76342115766761480179999998520644679977986023355777776641388632787213322221111000
Q gi|254780624|r 36 RVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRA 115 (265)
Q Consensus 36 ~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~ 115 (265)
.|-..||-+-..+|.|--.. |.++... . .++..|.|+=.|-|..++...-..+ -..|+++|..+..++.-+..+
T Consensus 165 GI~~~~d~t~~MFS~GN~~E-K~Rv~~~-s---c~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227 165 GITQIWDPTKTMFSRGNIKE-KKRVLNT-S---CDGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNA 238 (351)
T ss_pred CEEEEECHHHHHHHCCCHHH-HHHHHHC-C---CCCCHHHHHHCCCCEEEEEHHHCCC-CCEEEEEECCHHHHHHHHHHH
T ss_conf 75798220555663576898-8776512-4---5653012234265448740230057-457999945879999999877
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCC--EEEEEEC
Q ss_conf 00112222222222233345755446740366420132134432012100048521--1776305
Q gi|254780624|r 116 FKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGG--RLLVLEF 178 (265)
Q Consensus 116 ~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG--~~~i~df 178 (265)
+..+...+...+.||-.. +-++...|.|-.+ | +|.-++.---+..+|||.| .+.|+|-
T Consensus 239 ~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLG--L--lPSse~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227 239 EANNVMDRCRITEGDNRN-PKPRLRADRVNLG--L--LPSSEQGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred HHCCHHHHHHHHHCCCCC-CCCCCCCHHEEEC--C--CCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 741157887866510236-6755320203643--4--5655444288998841257837997425
No 275
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=90.05 E-value=0.3 Score=28.18 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=61.5
Q ss_pred HHHCCCCCCCCEEEE--CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC-CC-CCC
Q ss_conf 520644679977986--02335577777664138863278721332222111100000112222222222233-34-575
Q gi|254780624|r 62 TNLNPRKSKDYRVLD--VAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE-TL-PFE 137 (265)
Q Consensus 62 ~~l~~~~~~~~~iLD--iGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~-~l-p~~ 137 (265)
+....++++ +||= -+.|-|..+..+++..+ ++|++++-|++-++.+++ .|...-+++...|.. .+ .+.
T Consensus 134 ~~~~~~~g~--~vLi~gaaGgVG~~avQlAk~~G--a~Vi~t~~s~~k~e~~~~----lGA~~vi~~~~~~~~~~i~~~t 205 (327)
T PRK10754 134 KTYEIKPDE--QFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRALK----AGAWQVINYREENIVERVKEIT 205 (327)
T ss_pred HCCCCCCCC--EEEEECCCCCCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHH
T ss_conf 313789999--99998177611268999999869--999999898999999996----6999999899999999999986
Q ss_pred C-CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 5-4467403664201321344320121000485211776305
Q gi|254780624|r 138 A-NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 138 d-~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
+ ..+|+|+-+- . ...+....+.|+|+|+++..-.
T Consensus 206 ~g~gvdvv~D~v-----G--~~~~~~~~~~l~~~G~iv~~G~ 240 (327)
T PRK10754 206 GGKKVRVVYDSV-----G--KDTWEASLDCLQRRGLMVSFGN 240 (327)
T ss_pred CCCCCEEEEECC-----C--HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899836999898-----8--8999999998634989999806
No 276
>KOG1098 consensus
Probab=89.95 E-value=0.23 Score=28.92 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=53.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC----CCC----CCCCCC
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233----345----755446
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE----TLP----FEANSF 141 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~----~lp----~~d~sf 141 (265)
+...+||+||.+|.+..-.++.++..+-|+|+|+.+--. .+++...+.|+. +.+ ++.-..
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp------------~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP------------IPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred CCCHHEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCC------------CCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 441110002587479999997678873488752011246------------87632145464288888899999872777
Q ss_pred CCCEEEEEECCCH-----HH-------HHHHCCCCHHCCCCCEEE
Q ss_conf 7403664201321-----34-------432012100048521177
Q gi|254780624|r 142 DACTLAFGIRNMP-----HI-------TLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 142 D~V~~sf~l~~~~-----d~-------~~~l~e~~RvLKpGG~~~ 174 (265)
|+|+.- |-+||. |- -.+++=+...|..||.++
T Consensus 112 dvVLhD-gapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098 112 DVVLHD-GAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CEEEEC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 678405-88864316789999867889999999999997468430
No 277
>KOG2671 consensus
Probab=89.84 E-value=0.16 Score=29.95 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=56.4
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-------CHHCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 6446799779860233557777766413886327872133222211110-------000011-22222222222333457
Q gi|254780624|r 65 NPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRD-------RAFKEN-LQDCITFIEANAETLPF 136 (265)
Q Consensus 65 ~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~-------r~~~~~-~~~~i~~~~~da~~lp~ 136 (265)
...+| .-|+|==.|||.+....++. ++.|+|.||.-.|+...|. +.++.+ ...-+....+|..+-|+
T Consensus 205 mv~pG--divyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671 205 MVKPG--DIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421)
T ss_pred CCCCC--CEEECCCCCCCCEEEEHHHH---CCEEECCCCCHHEEECCCCCCCCHHHHHHHHCCCCHHHHEEEECCCCCCH
T ss_conf 06799--88744765667426662230---63564124531201134577742667687747753203204510567630
Q ss_pred CCC-CCCCCEE--EEEEC
Q ss_conf 554-4674036--64201
Q gi|254780624|r 137 EAN-SFDACTL--AFGIR 151 (265)
Q Consensus 137 ~d~-sfD~V~~--sf~l~ 151 (265)
.++ .||+|+| -||+|
T Consensus 280 rsn~~fDaIvcDPPYGVR 297 (421)
T KOG2671 280 RSNLKFDAIVCDPPYGVR 297 (421)
T ss_pred HHCCEEEEEEECCCCCHH
T ss_conf 103233378727981145
No 278
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=89.58 E-value=0.28 Score=28.43 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC----CCCCCCCCCEEEEEECCCH
Q ss_conf 335577777664138863278721332222111100000112222222222233345----7554467403664201321
Q gi|254780624|r 79 GGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP----FEANSFDACTLAFGIRNMP 154 (265)
Q Consensus 79 cGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp----~~d~sfD~V~~sf~l~~~~ 154 (265)
||.|.+...+++......+++.+|.+++.++.++++ ....+.||+.+.. ..-+..|.+.++. +
T Consensus 4 ~G~g~~G~~la~~L~~~~~v~vId~d~~~~~~~~~~--------~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~-----~ 70 (115)
T pfam02254 4 IGYGRVGRSLAEELREGGPVVVIDKDPERVEELREE--------GVPVVVGDATDEEVLEEAGIEDADAVVAAT-----G 70 (115)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHC--------CCEEEEEECCCHHHHHHHCCCCCCEEEEEC-----C
T ss_conf 878889999999998089999999987998778866--------986999956886678761920287999962-----9
Q ss_pred HHHH--HHCCCCHHCCCCCEEE
Q ss_conf 3443--2012100048521177
Q gi|254780624|r 155 HITL--VLQEIYRILKCGGRLL 174 (265)
Q Consensus 155 d~~~--~l~e~~RvLKpGG~~~ 174 (265)
|.+. .+-...|-+.|..+++
T Consensus 71 ~d~~n~~~~~~~r~~~~~~~ii 92 (115)
T pfam02254 71 DDEANILIVLLARELNPAKKII 92 (115)
T ss_pred CHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8499999999999978998099
No 279
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=89.30 E-value=0.44 Score=27.16 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=67.5
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC-CCCCCCCCCCCCC---
Q ss_conf 985206446799779860233557777766413886327872133222211110000011222-2222222233345---
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD-CITFIEANAETLP--- 135 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~-~i~~~~~da~~lp--- 135 (265)
+|+.|++++. ..-||.=-|.|--|..++++.+..+.++|+|--+..++.|++..... .. ++.++++...+++
T Consensus 19 lv~~L~ik~~--G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~--~~~~~~~~~~~F~~~~~~~ 94 (323)
T TIGR00006 19 LVEGLNIKPD--GIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDF--EGRRVVLIHDNFANFFEYL 94 (323)
T ss_pred HHHCCCCCCC--CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHHH
T ss_conf 9727654888--73654025851789999852399950788747989999999985321--0675788507603420032
Q ss_pred -CC--CCCCCCCEEEEEE--CCCHHHHHHHC
Q ss_conf -75--5446740366420--13213443201
Q gi|254780624|r 136 -FE--ANSFDACTLAFGI--RNMPHITLVLQ 161 (265)
Q Consensus 136 -~~--d~sfD~V~~sf~l--~~~~d~~~~l~ 161 (265)
.. -..||.|.+-.|+ ..+.++++++.
T Consensus 95 ~~~~~~~k~dGIL~DLGVSS~QLD~~~RGFS 125 (323)
T TIGR00006 95 KELDLVTKIDGILVDLGVSSPQLDDPERGFS 125 (323)
T ss_pred HCCCCEEEEEEEEECCCCCCHHCCCCCCCCC
T ss_conf 1158815774588615776031187888826
No 280
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=89.14 E-value=0.93 Score=25.06 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCEEEECCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEE
Q ss_conf 977986023355777-77664138863278721332222111100000112222222222233345755---44674036
Q gi|254780624|r 71 DYRVLDVAGGTGDVA-FRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA---NSFDACTL 146 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~-~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d---~sfD~V~~ 146 (265)
+.+||=+|= .+++ +.++- .+...+|+-+|+.+.+|+.-++.+.+.++ +|+.++.|..+ |+|. ++||+++.
T Consensus 45 Gk~iL~vGD--DDLtSlA~al-~~~p~~I~VvDIDeRll~fI~~~A~~~gl--~i~~~~~DlR~-pLP~~l~~~FD~f~T 118 (243)
T pfam01861 45 GKEILVLGD--DDLTSLAAAL-TGLPKRIAVVDIDERLIKFIERVAKEEGL--KIEAFVHDLRN-PLPEDLKHKFDVFIT 118 (243)
T ss_pred CCEEEEECC--CCHHHHHHHH-CCCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCC-CCCHHHHCCCCEEEC
T ss_conf 987999728--6187899996-48985489996758999999999997499--71688741014-899999616798971
Q ss_pred E--EEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 6--420132134432012100048521177630554455
Q gi|254780624|r 147 A--FGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 147 s--f~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
- |. ++-....+.-....||.-|...-.-+++..+
T Consensus 119 DPPyT---~~G~~LFlsRgi~~Lk~eg~agYfglt~~es 154 (243)
T pfam01861 119 DPPET---VDGLKAFLGRGIATLKGEGCAGYFGITHRES 154 (243)
T ss_pred CCCCC---HHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 89987---7899999999999826688522687642601
No 281
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=88.14 E-value=0.55 Score=26.51 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=46.0
Q ss_pred HHHHHHH--HHHHHHCCCCCEE--EEECCCCCCCCC---CCCCHHCCCCCCCCCCC-CCCCCCC----CCCCCCCCCCEE
Q ss_conf 3355777--7766413886327--872133222211---11000001122222222-2223334----575544674036
Q gi|254780624|r 79 GGTGDVA--FRIAEASDNRSQI--VVADINNEMLSV---GRDRAFKENLQDCITFI-EANAETL----PFEANSFDACTL 146 (265)
Q Consensus 79 cGTG~~~--~~l~~~~~~~~~v--~giD~s~~Ml~~---a~~r~~~~~~~~~i~~~-~~da~~l----p~~d~sfD~V~~ 146 (265)
+|-|+++ ..|++..+....+ +..|-.++..+. |.+.+..... .++... --||++| ++..+.||.|+-
T Consensus 3 VGeGdFSFS~aL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~gVDAt~l~~~~~~~~~~fD~IiF 81 (166)
T pfam10354 3 VGEGDFSFSLSLATAFGSPTNLTATSLDSREELEEKYGDAEENLEELEE-LGVTVLHGVDATKLKKHFSLKKNRFDRIIF 81 (166)
T ss_pred EECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 6664328999999962999838997458999998767559999999985-899599857445366684434783578998
Q ss_pred EEE-----E----CCCH-H---HHHHHCCCCHHCCCCCEEEEE
Q ss_conf 642-----0----1321-3---443201210004852117763
Q gi|254780624|r 147 AFG-----I----RNMP-H---ITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 147 sf~-----l----~~~~-d---~~~~l~e~~RvLKpGG~~~i~ 176 (265)
.|= . +++. + ....++.+..+|+|+|.+.|.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~sa~~~l~~~G~i~vT 124 (166)
T pfam10354 82 NFPHAGGKIKDSDRNIRLNRELLRGFFKNASELLKPGGEIHVT 124 (166)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7998888774125558999999999999999982799899999
No 282
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=88.10 E-value=0.7 Score=25.84 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=49.1
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 77986023355777776641388632787213322221-11100000112222222222233345755446740366420
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLS-VGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~-~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
.++|=+|+=.=++-..+.+.. ..+|+-++-+.--+. .++.|+.... ..+|. ++..-..++||+|.+-=.+
T Consensus 3 k~glVvGS~~PWvE~~aL~~G--A~~vlTvEYn~l~i~~~~~~rlssi~---p~ef~----~~~~~~~~~FD~a~SfSSi 73 (177)
T pfam03269 3 KSGVVIGSMQPWVEVSALQNG--ASKILTVEYNKLTIQEEFRDRLSSIL---PTDFA----KNFKKYAESFDFAASFSSI 73 (177)
T ss_pred CEEEEECCCCHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHCCCCCC---HHHHH----HHHHHHCCCEEEEEEEEEE
T ss_conf 518998477539999999818--87348997235556613321001156---88999----9987523532389996124
Q ss_pred CCC-----HH---H---HHHHCCCCHHCCCCCEEEE
Q ss_conf 132-----13---4---4320121000485211776
Q gi|254780624|r 151 RNM-----PH---I---TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 151 ~~~-----~d---~---~~~l~e~~RvLKpGG~~~i 175 (265)
.|. .| + .++++++.++|||||.+.+
T Consensus 74 EH~GLGRYGDpidp~Gdlk~m~~i~~~Lk~~G~l~l 109 (177)
T pfam03269 74 EHSGLGRYGDPIDPIGDLREMLKIKCVLKKGGLLFL 109 (177)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 440565568977985109999999986178967999
No 283
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.04 E-value=0.67 Score=25.99 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=10.2
Q ss_pred CCEEEECCHHHHHHHHHHHHH
Q ss_conf 977986023355777776641
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEA 91 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~ 91 (265)
+..|-|+|+=-+.+...+.+.
T Consensus 86 ~~ivTDVgSvK~~I~~~~~~~ 106 (357)
T PRK06545 86 GVIVTDVGSVKGAILAEAEAL 106 (357)
T ss_pred CCEEEECCCCHHHHHHHHHHH
T ss_conf 978997510079999999983
No 284
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.83 E-value=1.2 Score=24.40 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=43.9
Q ss_pred CEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 779860233--557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 72 YRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 72 ~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
+||+=+|+| .+.++..|++. +.+|+.++-++...+.-++.-...............+..-+-+-..||+|+++
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~a---g~~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~-- 75 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQA---GHDVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILA-- 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEE--
T ss_conf 9899999149999999999848---99889997888899999968939952897698055034886674898889998--
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 013213443201210004852117763
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
.. -.+.+.+++++...+.|+..++.+
T Consensus 76 vK-s~~~~~a~~~l~~~l~~~t~iv~l 101 (307)
T PRK06522 76 VK-AYQLPAALPDLAPLLGPETVVLFL 101 (307)
T ss_pred CC-CCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 06-668999999998645999489996
No 285
>KOG0023 consensus
Probab=86.48 E-value=1.6 Score=23.47 Aligned_cols=112 Identities=14% Similarity=0.196 Sum_probs=61.4
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222-22233345755
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI-EANAETLPFEA 138 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~-~~da~~lp~~d 138 (265)
.+..-...+++..-|.-+ +|-|.++..+++.++ .+|+++|-|+.-=+.| +...|.+.-|.+. ..| .+.---
T Consensus 173 pLk~~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG--~rV~vis~~~~kkeea---~~~LGAd~fv~~~~d~d--~~~~~~ 244 (360)
T KOG0023 173 PLKRSGLGPGKWVGIVGL-GGLGHMAVQYAKAMG--MRVTVISTSSKKKEEA---IKSLGADVFVDSTEDPD--IMKAIM 244 (360)
T ss_pred HHHHCCCCCCCEEEEECC-CCCCHHHHHHHHHHC--CEEEEEECCCHHHHHH---HHHCCCCEEEEECCCHH--HHHHHH
T ss_conf 267739999868988557-640168999998708--6799992785348999---98549621588427878--999998
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCH
Q ss_conf 44674036642013213443201210004852117763055445510
Q gi|254780624|r 139 NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPV 185 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~ 185 (265)
++.|.+.-. .-|+ -+.++.-+.+.||++|+++.+ +.|..++
T Consensus 245 ~~~dg~~~~--v~~~--a~~~~~~~~~~lk~~Gt~V~v--g~p~~~~ 285 (360)
T KOG0023 245 KTTDGGIDT--VSNL--AEHALEPLLGLLKVNGTLVLV--GLPEKPL 285 (360)
T ss_pred HHHCCCCEE--EEEC--CCCCHHHHHHHHCCCCEEEEE--ECCCCCC
T ss_conf 752675023--2102--324438888761039789998--3667765
No 286
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.32 E-value=0.33 Score=27.97 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=21.1
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 4467997798602335577777664138863278721332222111100
Q gi|254780624|r 66 PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR 114 (265)
Q Consensus 66 ~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r 114 (265)
+..+++.+||=|++|.- .++.++-.. | ++|++||+++.++...+-|
T Consensus 31 L~~~~~d~vl~I~s~G~-n~l~yl~~~-p-~~i~aVDlN~~q~~Ll~LK 76 (376)
T pfam11899 31 LNLGPDDTVLAITSAGC-NALSYLTAG-P-ARVHAVDLNPAQNALLELK 76 (376)
T ss_pred HCCCCCCEEEEEECCCH-HHHHHHHCC-C-CEEEEEECCHHHHHHHHHH
T ss_conf 48999997999837743-599976269-7-7689984899999999999
No 287
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=86.08 E-value=0.4 Score=27.41 Aligned_cols=42 Identities=24% Similarity=0.493 Sum_probs=33.4
Q ss_pred CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 213443201210004852117763055445510112345653
Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWS 194 (265)
Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~ 194 (265)
+..++.+|..+.++|+|||+++|+-|..-+.++...++..+.
T Consensus 217 L~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~ 258 (310)
T pfam01795 217 LESLKEALEQAPDLLAPGGRLSVISFHSLEDRIVKNFFREYS 258 (310)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 999999999999836899689999854346799999999840
No 288
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.65 E-value=1.2 Score=24.32 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=57.3
Q ss_pred CCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCC------CCCCCCCC------
Q ss_conf 99779860233-55777776641388632787213322221111000001122-222222------22233345------
Q gi|254780624|r 70 KDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFI------EANAETLP------ 135 (265)
Q Consensus 70 ~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~------~~da~~lp------ 135 (265)
++.+||=+|+| -|.-+...+++.+ +.|.+.|..++-.++.+ ..+.. -.+++. -|-|..+.
T Consensus 164 pPAkVlViGaGVAGlqAi~tA~~LG--A~V~a~DvR~~~~Eqve----SlGa~fv~v~~~e~~~~~gGYAk~~s~e~~~~ 237 (510)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVKEQVE----SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (510)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCHHHHHHHH----HHCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 8852899746477799999996279--78999658788999999----70674255210102445785035456789999
Q ss_pred ----CC--CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf ----75--5446740366420132134432012100048521177
Q gi|254780624|r 136 ----FE--ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 136 ----~~--d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
+. -...|+|..+=.+..-+-|...-+|+.+-.|||.+++
T Consensus 238 q~~~~~e~~~~aDiVItTalIPG~~AP~LIt~emV~~MKpGSVIV 282 (510)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITKEMVDSMKPGSVIV 282 (510)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHCCCCCEEE
T ss_conf 999999997424779986541899899703799995269997899
No 289
>PRK04148 hypothetical protein; Provisional
Probab=85.44 E-value=1.4 Score=23.82 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=58.4
Q ss_pred CEEEECCHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 77986023355-77777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 72 YRVLDVAGGTG-DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 72 ~~iLDiGcGTG-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
.+|.++|-|-= .++..|.+. +..|+++|+.+.-+..|+. ..++++.-|..+..++ -+..+-.-|++
T Consensus 18 ~kIvEvGIGf~~~vA~~L~e~---g~dv~~~Din~~aV~~a~~--------~Gl~~v~DDif~P~l~--iY~~a~lIYSI 84 (135)
T PRK04148 18 GKIAELGIGFYFKVAKKLKES---GFDVIVIDINKKAVEKAKK--------LGLNAFVDDIFNPNLE--IYKNAKLIYSI 84 (135)
T ss_pred CEEEEEECCCCHHHHHHHHHC---CCCEEEEECCHHHHHHHHH--------CCCCEEECCCCCCCHH--HHCCCCEEEEE
T ss_conf 738999236667899999874---9988999576554322123--------2876375158899888--85178879981
Q ss_pred CCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 1321344320121000485211776305
Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
|--++.+..+-++.+-+ |.-++|.-+
T Consensus 85 RPp~Elq~~il~lakkv--~~dliI~PL 110 (135)
T PRK04148 85 RPPRDLQPFILELAKKL--NCPLYIKPL 110 (135)
T ss_pred CCCHHHHHHHHHHHHHC--CCCEEEECC
T ss_conf 89878889999999975--998999707
No 290
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.09 E-value=0.5 Score=26.80 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 13322221111000001122222222222333-4-57554467403664201321--3443201210004852117763
Q gi|254780624|r 102 DINNEMLSVGRDRAFKENLQDCITFIEANAET-L-PFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 102 D~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-l-p~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+..|.-|....=...+.+. .+|++++++.++ | ..+++|+|.++.+-..-.++ +.....+++.|+++|||++++-
T Consensus 253 ~~lP~YL~~~~f~~lr~~~-dri~~ht~sl~e~L~~~~~~s~d~~vLlD~~DWm~~~~~~~~~~~i~r~a~pgaRVl~R 330 (376)
T pfam11899 253 DCLPPYLKPENFEALRAGA-DRVRIHTDSLTEVLARLPAGSLTRAVLLDAMDWMDPEQLNALWREITRTAAPGARVLFR 330 (376)
T ss_pred CCCCHHHCHHHHHHHCCCC-CCEEEEECCHHHHHHHCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7897333653699870888-82599827599999738998733899702553499999999999999974899689983
No 291
>KOG2360 consensus
Probab=84.74 E-value=0.57 Score=26.44 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=55.7
Q ss_pred HHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52064467997798602335577777664138863278721332222111100000112222222222233345755446
Q gi|254780624|r 62 TNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSF 141 (265)
Q Consensus 62 ~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sf 141 (265)
..+.|.+| ..|+|.+|-.|.-+..++...+++++|+|.|....-.+.-++-+...|. .+++-.++|+.+.+.+.. |
T Consensus 207 ~ll~p~~g--~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t~~~~~-~ 282 (413)
T KOG2360 207 HLLDPRPG--SRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNTATPEK-F 282 (413)
T ss_pred HHCCCCCC--CCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCC-C
T ss_conf 54389998--8235541466532112998862248721323416889999999987178-745320144447778100-2
Q ss_pred CCC
Q ss_conf 740
Q gi|254780624|r 142 DAC 144 (265)
Q Consensus 142 D~V 144 (265)
--|
T Consensus 283 ~~v 285 (413)
T KOG2360 283 RDV 285 (413)
T ss_pred CCE
T ss_conf 650
No 292
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=84.43 E-value=1.2 Score=24.42 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=56.0
Q ss_pred HHHHCCCCCCCCEEEE-CCH-HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC--CCCCCCCCC-CCC-
Q ss_conf 8520644679977986-023-3557777766413886327872133222211110000011222--222222223-334-
Q gi|254780624|r 61 VTNLNPRKSKDYRVLD-VAG-GTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD--CITFIEANA-ETL- 134 (265)
Q Consensus 61 i~~l~~~~~~~~~iLD-iGc-GTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~--~i~~~~~da-~~l- 134 (265)
.+....+++ .+||= -|| |.|..+..+++..+ ++|+++.-|++-++.+++ .+... -++....|. +.+
T Consensus 97 ~~~~~i~~g--~~VlI~gg~G~vG~~aiqlak~~G--a~Vi~t~~s~~k~~~~~~----lG~~~~~v~~~~~~~~~~~v~ 168 (288)
T smart00829 97 VDLARLRPG--ESVLIHAAAGGVGQAAIQLAQHLG--AEVFATAGSPEKRDFLRE----LGIPDDHIFSSRDLSFADEIL 168 (288)
T ss_pred HHHCCCCCC--CEEEEECCCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH----CCCCCCEEEECCCCCHHHHHH
T ss_conf 975088999--999997898677799999999739--830034088899999997----699960762179950999999
Q ss_pred C-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 5-75544674036642013213443201210004852117763
Q gi|254780624|r 135 P-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 135 p-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
. ....-+|+|.-+-+ ...+.+..+.|+|+|+++.+
T Consensus 169 ~~t~g~gvDvv~d~vg-------g~~~~~~~~~l~~~G~~v~i 204 (288)
T smart00829 169 RATGGRGVDVVLNSLA-------GEFLDASLRCLAPGGRFVEI 204 (288)
T ss_pred HHHCCCCCEEEEECCC-------HHHHHHHHHHHCCCCEEEEE
T ss_conf 8708988279998986-------89999999975369889997
No 293
>KOG2651 consensus
Probab=84.24 E-value=0.84 Score=25.34 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
Q ss_conf 998520644679977986023355777776641388632787213322221111
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR 112 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~ 112 (265)
.++..+....|-+ .+.|+|.|.|.++..++-.++ -+|++||-|....+.|+
T Consensus 143 elvSsi~~f~gi~-~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651 143 ELVSSISDFTGID-QVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHCCCC-HHHCCCCCCCHHHHHHHHCCC--CEEEEECCCHHHHHHHH
T ss_conf 9999887651871-141157773289999864268--16999646368899999
No 294
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=84.12 E-value=0.46 Score=27.04 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=33.1
Q ss_pred CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 213443201210004852117763055445510112345653
Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWS 194 (265)
Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~ 194 (265)
+..++.+|..+.++|+|||+++|+-|..-+.++...++..+.
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~vISfHSLEDRiVK~ff~~~~ 257 (309)
T PRK00050 216 LEELEEALEAALEVLAPGGRLSVISFHSLEDRIVKRFFKEAS 257 (309)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 999999999999998507539999843325789999999732
No 295
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.07 E-value=0.55 Score=26.53 Aligned_cols=89 Identities=16% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHC----CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC-CCCCCCCCCCCCC-
Q ss_conf 99985206----44679977986023355777776641388632787213322221111000001-1222222222223-
Q gi|254780624|r 58 EAMVTNLN----PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCITFIEANA- 131 (265)
Q Consensus 58 ~~~i~~l~----~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~-~~~~~i~~~~~da- 131 (265)
+++.+.|. ..++++.++||||.|.--+ ..+.-...=..+.+|.|+++..++.|+.-+... ++...|+.....-
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCI-YPliG~~eYgwrfvGseid~~sl~sAk~ii~~N~~l~~~I~lr~qk~~ 140 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCI-YPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDS 140 (292)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCCCC-CCCCCCEEECCEEECCCCCHHHHHHHHHHHHCCCCHHHHEEEEECCCC
T ss_conf 9999998743898776764788504576420-021332121220015746877888889998709041533367752685
Q ss_pred ----CCCCCCCCCCCCCEEE
Q ss_conf ----3345755446740366
Q gi|254780624|r 132 ----ETLPFEANSFDACTLA 147 (265)
Q Consensus 132 ----~~lp~~d~sfD~V~~s 147 (265)
..+--.++.||+++|.
T Consensus 141 ~~if~giig~nE~yd~tlCN 160 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCN 160 (292)
T ss_pred CCCCCCCCCCCCEEEEEECC
T ss_conf 43416510344333057518
No 296
>KOG2912 consensus
Probab=83.42 E-value=3.4 Score=21.41 Aligned_cols=89 Identities=16% Similarity=0.330 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCCCCCC--EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 999999852064467997--798602335577777664138863278721332222111100000112222222222233
Q gi|254780624|r 55 FWKEAMVTNLNPRKSKDY--RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265)
Q Consensus 55 ~Wr~~~i~~l~~~~~~~~--~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265)
.|.+.++..-+ .+++. +-+|||.|+--+- .+..........++.|+-+.-...|++...+.++...|+.++-...
T Consensus 87 hwI~DLLss~q--~~k~~i~~GiDIgtgasci~-~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ 163 (419)
T KOG2912 87 HWIEDLLSSQQ--SDKSTIRRGIDIGTGASCIY-PLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQ 163 (419)
T ss_pred HHHHHHHHCCC--CCCCCEEEEEECCCCHHHHH-HHHHHHHCCCEEEEEECCCCCCCHHHCCCCCCCCCCCEEEEEECCH
T ss_conf 78998873366--78761663020267534667-8640002163236641210235545424000366010357784533
Q ss_pred CCCC-------CCCCCCCCEE
Q ss_conf 3457-------5544674036
Q gi|254780624|r 133 TLPF-------EANSFDACTL 146 (265)
Q Consensus 133 ~lp~-------~d~sfD~V~~ 146 (265)
+--+ ++..||.++|
T Consensus 164 ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912 164 KTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred HHCCHHHHCCCCCCEEEEEEC
T ss_conf 320121322676532468832
No 297
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=82.99 E-value=1.5 Score=23.76 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=62.8
Q ss_pred CCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 9779860233-557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 71 DYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 71 ~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
+.+|.=+|.| -|-.+-.++--. .+.|+-+|+|..-|++-.. -...+++....+..++.-.=...|.+..+-.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd-----~f~~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDD-----LFGGRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCEEEECCCCCCCHHHHHHHCC--CCEEEEEECCHHHHHHHHH-----HHCCEEEEEECCHHHHHHHHHHCCEEEEEEE
T ss_conf 76089987761240699997236--8706999527788764067-----6576669997589999987431267988888
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 0132134432012100048521177
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
+---..|..+.+|+..-+|||+.++
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ECCCCCCEEHHHHHHHHCCCCCEEE
T ss_conf 4588786010699997447985899
No 298
>KOG2352 consensus
Probab=82.62 E-value=0.79 Score=25.53 Aligned_cols=105 Identities=20% Similarity=0.127 Sum_probs=62.4
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-------CCCCCCCCC
Q ss_conf 9977986023355777776641388632787213322221111000001122222222222333-------457554467
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-------LPFEANSFD 142 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-------lp~~d~sfD 142 (265)
...++|=+|-|.|.+...+.... +..+++++.+.+.||+.|+.-.--.... +.+....|+.. -.-++..||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred CCCCEEEEECCCCCCCCCEEEEC-CCCCEEEEEECHHHHHCCHHHHCHHHHH-HHHHHHHHCHHHHHHHHHCCCCCCCCC
T ss_conf 66757998328775400200205-7341159997816840557652535655-220037303599999861564466875
Q ss_pred CCEEEE---EECCC--HH----HHHHHCCCCHHCCCCCEEEEE
Q ss_conf 403664---20132--13----443201210004852117763
Q gi|254780624|r 143 ACTLAF---GIRNM--PH----ITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 143 ~V~~sf---~l~~~--~d----~~~~l~e~~RvLKpGG~~~i~ 176 (265)
++..-- -.|-. |- -+.+|+.+.-+|.|-|.++|.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 7999778998566728964787899988776106866348998
No 299
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.54 E-value=1.1 Score=24.71 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=43.1
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEE
Q ss_conf 977986023355777776641388632787213322221111000001122222222222333457---55446740366
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF---EANSFDACTLA 147 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~---~d~sfD~V~~s 147 (265)
..+++|+-||-|-+...+.+.. -. -+.++|+.+.-++.-+.+.. .-..+++|...+.- +...+|+++.+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~-~~~a~Eid~~a~~ty~~n~~------~~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FE-IVFANEIDPPAVATYKANFP------HGDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHCC-CE-EEEEEECCHHHHHHHHHHCC------CCCCHHHHHHHHCHHHCCCCCCCEEEEC
T ss_conf 8549986587565889998649-84-89987469889999998588------8742030376605222355676379858
Q ss_pred E
Q ss_conf 4
Q gi|254780624|r 148 F 148 (265)
Q Consensus 148 f 148 (265)
+
T Consensus 75 p 75 (328)
T COG0270 75 P 75 (328)
T ss_pred C
T ss_conf 9
No 300
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=81.31 E-value=3.4 Score=21.41 Aligned_cols=101 Identities=22% Similarity=0.161 Sum_probs=46.0
Q ss_pred EEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 79860233--5577777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 73 RVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 73 ~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
+|+=+|.| .|.++..+.+.. ....|+|.|.+..-++.+.+. + +.....+... --.....|+|+.+-
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~l----g----v~d~~~~~~~-~~~~~~aDlVivav-- 72 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALEL----G----VIDELTVAGL-AEAAAEADLVIVAV-- 72 (279)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHC----C----CCHHHCCCHH-HHHCCCCCEEEEEC--
T ss_conf 8999877467799999999769-847997247746778776635----8----5301001155-54135699899957--
Q ss_pred CCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 13213443201210004852117763055445510112
Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKK 188 (265)
Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~ 188 (265)
-+.-....++++...||||-.+ .|.+..+..++..
T Consensus 73 -Pi~~~~~~l~~l~~~l~~g~iv--~Dv~S~K~~v~~a 107 (279)
T COG0287 73 -PIEATEEVLKELAPHLKKGAIV--TDVGSVKSSVVEA 107 (279)
T ss_pred -CHHHHHHHHHHHCCCCCCCCEE--ECCCCHHHHHHHH
T ss_conf -7889999999863037999889--7364201789999
No 301
>PRK10742 putative methyltransferase; Provisional
Probab=80.79 E-value=1.6 Score=23.62 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=55.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC---CCCCCHHCCC-----CCCCCCCCCC
Q ss_conf 9998520644679977986023355777776641388632787213322221---1110000011-----2222222222
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLS---VGRDRAFKEN-----LQDCITFIEA 129 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~---~a~~r~~~~~-----~~~~i~~~~~ 129 (265)
+.+.+.+..+.+..-+|||.-.|-|.-++.|+... ++|+.++-++-|-. -+-+|+.... ...+++++++
T Consensus 76 q~lakAvG~k~~~~P~VlDATAGLGrDAfvLAslG---c~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~g 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred CHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECC
T ss_conf 26678756678999818987887468899998179---869999788999999999999987381558999961678658
Q ss_pred CCCC-CCCCCCCCCCCEE
Q ss_conf 2333-4575544674036
Q gi|254780624|r 130 NAET-LPFEANSFDACTL 146 (265)
Q Consensus 130 da~~-lp~~d~sfD~V~~ 146 (265)
|+.. ++-....+|+|..
T Consensus 153 ds~~~L~~~~~~~DVIYL 170 (250)
T PRK10742 153 SSLTALTDITPRPQVVYL 170 (250)
T ss_pred CHHHHHHHCCCCCCEEEE
T ss_conf 689999735889888997
No 302
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=80.60 E-value=1.4 Score=23.93 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=45.1
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEE
Q ss_conf 7798602335577777664138863278721332222111100000112222222222233345755--4467403664
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA--NSFDACTLAF 148 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d--~sfD~V~~sf 148 (265)
.++||+=||.|-++..+.+.. - --+.++|+.+..++..+.+. .. ...++|.+++.-.+ ..+|+++.++
T Consensus 1 l~v~dLFsG~GG~s~Gl~~aG-~-~~~~a~e~d~~a~~t~~~N~-----~~--~~~~~Di~~~~~~~~~~~vDll~ggp 70 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAG-F-EIVAANEIDKSAAETYEANF-----PN--KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred CCEEEECCCCCHHHHHHHHCC-C-EEEEEEECCHHHHHHHHHHC-----CC--CCCCCCHHHCCCCCCCCCCCEEEECC
T ss_conf 959997678078999999869-9-89999968999999999887-----99--95258864465321378878898689
No 303
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=80.11 E-value=0.83 Score=25.38 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=37.1
Q ss_pred CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCH
Q ss_conf 213443201210004852117763055445510112345653111
Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKV 197 (265)
Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~i 197 (265)
+..++.+|+.+..+|+|||+|.|+=|.--+.++.+.++.-++...
T Consensus 227 L~~Le~~L~~~~~~L~~~Grl~vIsFHSLEDriVK~~f~~~s~~~ 271 (323)
T TIGR00006 227 LEELEEALQQAPNLLKPGGRLSVISFHSLEDRIVKNFFKELSKFP 271 (323)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999841789718987400056799999998614766
No 304
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=78.95 E-value=2 Score=22.95 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=20.7
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 7798602335577777664138863278721332
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINN 105 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~ 105 (265)
....|+|||.|.+..-|..-.- .=.|+|.-.
T Consensus 60 ~~FvDlGCGNGlLV~IL~~EGy---~G~GiD~R~ 90 (112)
T pfam07757 60 QSFVDIGCGNGLLVYILASEGY---RGYGIDLRK 90 (112)
T ss_pred CCEEEECCCCHHHHHHHHHCCC---CCCCCCCCC
T ss_conf 8537714772289998986788---773314100
No 305
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=77.94 E-value=4.5 Score=20.64 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=45.6
Q ss_pred ECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 60233--5577777664138863278721332222111100000-11222222222223334575544674036642013
Q gi|254780624|r 76 DVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK-ENLQDCITFIEANAETLPFEANSFDACTLAFGIRN 152 (265)
Q Consensus 76 DiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~-~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~ 152 (265)
=+|+| .+.++..|++. ..+|+.++-++ .++.-+++-.. ........+..-.....+.+...+|.|..+ ..
T Consensus 3 IiGaGaiG~~~a~~L~~a---g~~V~lv~R~~-~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~--vK- 75 (150)
T pfam02558 3 ILGAGAVGSLYGARLARA---GHDVTLIARGR-HLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVA--VK- 75 (150)
T ss_pred EECCCHHHHHHHHHHHHC---CCEEEEEECCC-HHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEE--EC-
T ss_conf 996689999999999977---99289997563-678877497699947983898074103865765886799997--22-
Q ss_pred CHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 213443201210004852117763
Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
-.+.+.+++.+...|+|+..++++
T Consensus 76 a~~~~~al~~l~~~l~~~t~iv~l 99 (150)
T pfam02558 76 AYQTAEALEDLAPLLGPNTVVLLL 99 (150)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 458899999988652888389994
No 306
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=77.58 E-value=1.8 Score=23.28 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=76.9
Q ss_pred CCCCCEEECCCEECCHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHCCCCCCCCEEEECCHHHH
Q ss_conf 5678512115212798999-9999999987634211576676148017999999----8520644679977986023355
Q gi|254780624|r 8 SDNNMKTSYGFREVPEEEK-QNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM----VTNLNPRKSKDYRVLDVAGGTG 82 (265)
Q Consensus 8 ~~~~~~~~fGf~~v~~~~k-~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~----i~~l~~~~~~~~~iLDiGcGTG 82 (265)
+...|.+|+|-+++.=|=+ |+.+++ || |-+++.-.|+.+ ++... .|==.|.||=
T Consensus 217 D~~GN~vyLgERDCSiQRR~QKllEE-----aP---------sP~Lt~ElR~~~G~~Av~aA~-------~iGY~GaGTv 275 (451)
T TIGR00514 217 DKYGNVVYLGERDCSIQRRNQKLLEE-----AP---------SPALTSELREKMGDAAVKAAK-------SIGYTGAGTV 275 (451)
T ss_pred CCCCCEEEECCCCCCHHCCCCCEEEE-----CC---------CCCCCHHHHHHHHHHHHHHHH-------HCCCEECCEE
T ss_conf 17888789712146200046544654-----68---------887788999999899999998-------6498003516
Q ss_pred HHHHHHHHH-C-------------CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 777776641-3-------------88632787213322221111000001122222222222333457554467403664
Q gi|254780624|r 83 DVAFRIAEA-S-------------DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265)
Q Consensus 83 ~~~~~l~~~-~-------------~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265)
.+.+.-... + +-.-.|||+|+-.++|++|+- ..+.|.|-|. .|+-.+.. |-
T Consensus 276 EFLld~~~~rFYFmEMNTRIQVEHPVTEmvtGvDL~keQirvA~G--------~~L~~kQe~v---~~~GHaie---CR- 340 (451)
T TIGR00514 276 EFLLDKNGQRFYFMEMNTRIQVEHPVTEMVTGVDLIKEQIRVAAG--------EKLSLKQEDV---KLRGHAIE---CR- 340 (451)
T ss_pred EEEEECCCCEEEEEEECCEEEEEECCEEEEECHHHHHHHHHHHCC--------CCCCCCCCEE---EEEEEEEE---EE-
T ss_conf 888625887357765176021110320146002578889987378--------9566431147---99988998---65-
Q ss_pred EECCCHHHHHHH----CCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHH-----HHHHHC
Q ss_conf 201321344320----1210004852117763055445510112345653111332-----102542
Q gi|254780624|r 149 GIRNMPHITLVL----QEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQ-----LGRFIA 206 (265)
Q Consensus 149 ~l~~~~d~~~~l----~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~-----~g~~~~ 206 (265)
+ |-+||.+-+ -++..-|-|||-.+=+| + ..|..+.+|+ +|+++.
T Consensus 341 -I-NAEDP~~~F~PsPG~i~~ylpPGG~gVR~D---------S---h~Y~gY~iPPyYDSmIaKlI~ 393 (451)
T TIGR00514 341 -I-NAEDPIKNFLPSPGRITSYLPPGGPGVRVD---------S---HVYSGYTIPPYYDSMIAKLIT 393 (451)
T ss_pred -E-CCCCCCCCCCCCCCCCCCCCCCCCCCEECC---------C---EECCCCCCCCCCHHCCEEEEE
T ss_conf -1-455878778688850155468797522010---------0---344878769840202012464
No 307
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=77.44 E-value=5.9 Score=19.91 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=48.3
Q ss_pred CCEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH----HCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9779860233--55777776641388632787213322221111000----00112222222222233345755446740
Q gi|254780624|r 71 DYRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRA----FKENLQDCITFIEANAETLPFEANSFDAC 144 (265)
Q Consensus 71 ~~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~----~~~~~~~~i~~~~~da~~lp~~d~sfD~V 144 (265)
.+||+=+|+| .+.++..|++. +.+|+.++-+++-++..++.- ...+.. ....-.+. .+-....+|.|
T Consensus 2 ~MkI~IiGaGAiG~~~a~~L~~a---g~dV~lv~r~~~~~~~~~~~g~~~~~~~~~~---~~~~v~~~-~~~~~~~~D~v 74 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQAGGLTLVEQGQA---SLYAIPAE-TADAPEPIHRL 74 (305)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCEEEEECCCE---EEEECCCC-CCCCCCCCCEE
T ss_conf 98899988239999999999848---9973999947899999997899899868955---78740465-76657887789
Q ss_pred EEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 36642013213443201210004852117763
Q gi|254780624|r 145 TLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 145 ~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+.+ .. -.+.+.+++.+...+.|++.++.+
T Consensus 75 iva--vK-~~~~~~a~~~l~~~l~~~t~Iv~l 103 (305)
T PRK05708 75 LVA--CK-AYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EEE--EC-CCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 998--04-256899999988644999589994
No 308
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.84 E-value=3.1 Score=21.66 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=64.5
Q ss_pred HHHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC-C----CC
Q ss_conf 9985206446799779860233-5577777664138863278721332222111100000112222222222-2----33
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA-N----AE 132 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~-d----a~ 132 (265)
..++....+++. .+.=+||| -|..+..-++..+. .+|+++|+.+.-++.|++- +...-++-... | +.
T Consensus 176 av~nta~v~~G~--tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~ 248 (366)
T COG1062 176 AVVNTAKVEPGD--TVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIV 248 (366)
T ss_pred HHHHCCCCCCCC--EEEEEECCHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHC----CCCEEECCCCHHHHHHHHH
T ss_conf 764104689998--48999042766999998987488-5499993777899999863----9824655400254899999
Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCH
Q ss_conf 34575544674036642013213443201210004852117763055445510
Q gi|254780624|r 133 TLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPV 185 (265)
Q Consensus 133 ~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~ 185 (265)
++ -+.-.|.+ +.-.- ...+++..+..+.++|+.+++-+..+...+
T Consensus 249 ~~--T~gG~d~~-----~e~~G-~~~~~~~al~~~~~~G~~v~iGv~~~~~~i 293 (366)
T COG1062 249 EL--TDGGADYA-----FECVG-NVEVMRQALEATHRGGTSVIIGVAGAGQEI 293 (366)
T ss_pred HH--CCCCCCEE-----EECCC-CHHHHHHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf 86--27887789-----99259-989999999987437818999527987542
No 309
>pfam05206 TRM13 Methyltransferase TRM13. This is a family of eukaryotic proteins which are responsible for 2'-O-methylation of tRNA at position 4. TRM13 shows no sequence similarity to other known methyltransferases.
Probab=76.08 E-value=4.6 Score=20.57 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=38.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCC----CEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99779860233557777766413886----3278721332222111100000112222222222233345
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNR----SQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP 135 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~----~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp 135 (265)
++..+++.|||.|.++.++++..+.. ..++-||-...=.+.= .++.+.. ...++-+..|+++|.
T Consensus 18 ~~~~~vEfGAGrG~LS~~v~~~l~~~~~~~~~~~LIDR~s~R~K~D-~k~r~~~-~~~~~R~riDI~DL~ 85 (256)
T pfam05206 18 PSTAYVEFGAGKGELSRYLNQCLLEDQLSNPGFVLIDRASNRLKAD-RKIRKDE-SPPIKRLRIDIKDLN 85 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCH-HHHHCCC-CCCEEEEEEEHHHCC
T ss_conf 9988999789646999999998523456676389998888775431-1021378-882589995325457
No 310
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=75.73 E-value=3 Score=21.74 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=20.6
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 998520644679977986023355777776641388632787
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVV 100 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~g 100 (265)
..++.+.+..+++..|.|+|+=-+.+...+.+..++....+|
T Consensus 60 ~~l~~l~~~~~~~~ivtDv~SvK~~i~~~~~~~~~~~~~fvg 101 (258)
T pfam02153 60 EVLKELAPHLKEGALITDVGSVKVEIVKDAEQLLSDGVGFIP 101 (258)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEC
T ss_conf 999998865589958995355557999999985556786460
No 311
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=74.12 E-value=7.1 Score=19.38 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCEEEECCHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC------CCCCC
Q ss_conf 9779860233557777766---41388632787213322221111000001122222222222333457------55446
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIA---EASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF------EANSF 141 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~---~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~------~d~sf 141 (265)
+..|++.|.--|-.++..| -..+...+|+++||+-..++-+..+ .+.|.|++|+..++.. ..+-+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHC------CCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 75067642325740112067698649973289974566758865631------797389837988878999999974579
Q ss_pred CCCE-EEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 7403-664201321344320121000485211776305
Q gi|254780624|r 142 DACT-LAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 142 D~V~-~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
--|+ |--+-|+....-+.|+-..+.|-.|-.+++-|-
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 96799964875099999999976067643756999635
No 312
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=72.89 E-value=3.1 Score=21.72 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=53.3
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEE---
Q ss_conf 7798602335577777664138863278721332222111100000112222222222233345755-446740366---
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA-NSFDACTLA--- 147 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d-~sfD~V~~s--- 147 (265)
.+++|+=||.|-++..+.+..- . -+.++|+.+..++.-+.+.. +..++|..++...+ ...|+++.+
T Consensus 1 ~~vidlF~G~GG~s~G~~~aG~-~-~~~a~e~d~~a~~ty~~N~~--------~~~~~Di~~~~~~~~~~~Dvl~ggpPC 70 (319)
T pfam00145 1 FKFIDLFAGIGGFRLGLEQAGF-E-CVAANEIDKSAAKTYEANFP--------KVPIGDITLIDIKDIPDIDILTGGFPC 70 (319)
T ss_pred CCEEEECCCCCHHHHHHHHCCC-E-EEEEEECCHHHHHHHHHHCC--------CCCCCCCCCCCHHHCCCCCEEEECCCC
T ss_conf 9589978070789999998799-2-99998389999999998779--------996177540887478886889868999
Q ss_pred --EEE---C-CCHHHH-HHHCCCCHH---CCCCCEEEEEE
Q ss_conf --420---1-321344-320121000---48521177630
Q gi|254780624|r 148 --FGI---R-NMPHIT-LVLQEIYRI---LKCGGRLLVLE 177 (265)
Q Consensus 148 --f~l---~-~~~d~~-~~l~e~~Rv---LKpGG~~~i~d 177 (265)
|+. + .+.|+. ..+.++.|+ +|| .++++|
T Consensus 71 Q~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~v~E 108 (319)
T pfam00145 71 QDFSIAGKQKGFEDTRGTLFFEIIRIIKEKKP--KAFLLE 108 (319)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_conf 87240155688534331389999998775198--688730
No 313
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=72.38 E-value=7.8 Score=19.09 Aligned_cols=88 Identities=22% Similarity=0.361 Sum_probs=55.7
Q ss_pred CEEEECCHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEE
Q ss_conf 77986023355-7777766413886327872133222211110000011222222222223334575-544674036642
Q gi|254780624|r 72 YRVLDVAGGTG-DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE-ANSFDACTLAFG 149 (265)
Q Consensus 72 ~~iLDiGcGTG-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~-d~sfD~V~~sf~ 149 (265)
.||.++|-|.= .++..|.+. +..|+++|+.+.-+. ..++++.-|..+...+ =...|+| |+
T Consensus 15 gkiVEVGIG~~~~vA~~L~~~---g~dv~~tDi~~~av~------------~gl~~v~DDif~P~~~lY~~A~lI---YS 76 (127)
T pfam03686 15 GKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKAVP------------EGLRFVVDDITNPNISIYEGADLI---YS 76 (127)
T ss_pred CCEEEEECCCCHHHHHHHHHC---CCCEEEEECCCCCCC------------CCCCEEECCCCCCCHHHHCCCCEE---EE
T ss_conf 858999136888999999985---996899977765766------------788878725889898895587889---98
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf 013213443201210004852117763055
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
+|--++.+..+-++.+- -|.-++|.-++
T Consensus 77 IRPp~El~~~i~~lA~~--v~a~liI~PL~ 104 (127)
T pfam03686 77 IRPPPELQSAILDVAKA--VGAPLYIKPLT 104 (127)
T ss_pred CCCCHHHHHHHHHHHHH--CCCCEEEECCC
T ss_conf 18987888999999998--19989998488
No 314
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=72.05 E-value=5 Score=20.36 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=48.7
Q ss_pred CEEEECCHHH-H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCC---CHHCCCCCCCCCCCCCCCCCCCCC------CCC
Q ss_conf 7798602335-5-7777766413886327872133222211110---000011222222222223334575------544
Q gi|254780624|r 72 YRVLDVAGGT-G-DVAFRIAEASDNRSQIVVADINNEMLSVGRD---RAFKENLQDCITFIEANAETLPFE------ANS 140 (265)
Q Consensus 72 ~~iLDiGcGT-G-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~---r~~~~~~~~~i~~~~~da~~lp~~------d~s 140 (265)
++|-=+|+|- | -++..+++. +.+|+|+|++++-++.-++ ...+.++..-+.-.. ..++-+. -..
T Consensus 1 MkI~ViGlGyVGl~~a~~la~~---G~~V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~--~~~~~~~~~~~~~i~~ 75 (185)
T pfam03721 1 MRIAVIGLGYVGLPTAVCLAEI---GHDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKANV--SGRLRFTTDVAEAIKE 75 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHH--CCCEEEECCHHHHHHH
T ss_conf 9799989787489999999948---9939999799899999862689746758899998734--0896998787998844
Q ss_pred CCCCEEEEEE-------CCCHHHHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 6740366420-------1321344320121000485211776305544
Q gi|254780624|r 141 FDACTLAFGI-------RNMPHITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 141 fD~V~~sf~l-------~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
.|+|+++-.. -++.....+++++.++++||- ++|++-+.|
T Consensus 76 ~d~i~I~VpTP~~~~~~~d~s~l~~~~~~i~~~l~~~~-liii~STVp 122 (185)
T pfam03721 76 ADVIFIAVPTPSKKGGAPDLTYVESAARTIGPVLKKGK-VVVVKSTVP 122 (185)
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-EEEEECCCC
T ss_conf 98999973687655767663599999999974467998-999918999
No 315
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=71.25 E-value=2.1 Score=22.72 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=44.8
Q ss_pred ECCHHHHHHHHHHHHHCCCCC------EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 602335577777664138863------2787213322221111000001122222222222
Q gi|254780624|r 76 DVAGGTGDVAFRIAEASDNRS------QIVVADINNEMLSVGRDRAFKENLQDCITFIEAN 130 (265)
Q Consensus 76 DiGcGTG~~~~~l~~~~~~~~------~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d 130 (265)
+.|.+|-..+..++....+.. |+||...+-+|++-|-+|+.+.|. +||=-++||
T Consensus 44 gAGG~~~~~t~~ias~~q~~~~~et~MHLTCTN~~~e~ID~AL~~~~~~G~-~NiLALRGD 103 (312)
T TIGR00677 44 GAGGTTAELTLTIASTAQNVLGVETCMHLTCTNMPIEMIDDALERAKSNGI-QNILALRGD 103 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEECCCCC
T ss_conf 878861456699999987551455300355789757889999999986565-334003761
No 316
>PRK10416 cell division protein FtsY; Provisional
Probab=71.03 E-value=5.2 Score=20.26 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=59.8
Q ss_pred CCCCEEEECCH-HHHHHH--HHHHHHCCC---CCEEEEECCC-CCCCCCCCCCHHCCCCCCCCCCCCC----CCCCC---
Q ss_conf 79977986023-355777--776641388---6327872133-2222111100000112222222222----23334---
Q gi|254780624|r 69 SKDYRVLDVAG-GTGDVA--FRIAEASDN---RSQIVVADIN-NEMLSVGRDRAFKENLQDCITFIEA----NAETL--- 134 (265)
Q Consensus 69 ~~~~~iLDiGc-GTG~~~--~~l~~~~~~---~~~v~giD~s-~~Ml~~a~~r~~~~~~~~~i~~~~~----da~~l--- 134 (265)
..+..||=+|- |.|-.+ -.|+.++.. ..-+.+.|.- ..-+++-+ .-+-..+|.++.+ |.-.+
T Consensus 293 ~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~----~w~~r~~v~vi~~~~g~Dpa~V~~d 368 (499)
T PRK10416 293 KTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQ----VWGQRNNIPVIAQHTGADSASVIFD 368 (499)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH----HHHCCCCCEEEECCCCCCHHHHHHH
T ss_conf 998799997478787898999999999977995378840667568999999----9842457369836899997999999
Q ss_pred ---CCCCCCCCCCEEEE--EECCCHHHHHHHCCCCHHCC------CCCEEEEEECCCCCCCH
Q ss_conf ---57554467403664--20132134432012100048------52117763055445510
Q gi|254780624|r 135 ---PFEANSFDACTLAF--GIRNMPHITLVLQEIYRILK------CGGRLLVLEFSEVQGPV 185 (265)
Q Consensus 135 ---p~~d~sfD~V~~sf--~l~~~~d~~~~l~e~~RvLK------pGG~~~i~df~~p~~~~ 185 (265)
....+.+|+|.+-- -|||=.++-.-|+.+.||++ |.-.++++|-++-++.+
T Consensus 369 ai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQna~ 430 (499)
T PRK10416 369 AIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV 430 (499)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHH
T ss_conf 99999972999899857764326099999999999999723789997489997787677899
No 317
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=70.41 E-value=3 Score=21.82 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC
Q ss_conf 17999999852064467997798602335577777664138863278721332222111100000
Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK 117 (265)
Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~ 117 (265)
-..|-+.-++.-..+.+.+.+|.-+|+|.-.+.-.+++. + ++|.++|+++..|..-+-|+..
T Consensus 46 pqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr~-P--a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 46 PQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSRA-P--ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCCCCCCCCCHHHHHCCCCCEEEEECCCCCHHHHHHHCC-C--CEEEEEECCHHHHHHHHHHHHH
T ss_conf 545578633578885077837999458861387876149-7--6037883788998998999999
No 318
>KOG2078 consensus
Probab=68.68 E-value=1.2 Score=24.30 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=42.5
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCC-CCCCCCCCC
Q ss_conf 97798602335577777664138863278721332222111100000112222-222222233
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDC-ITFIEANAE 132 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~-i~~~~~da~ 132 (265)
+..|.|+-||-|-.+..++++ .+.|++-|+.++|++.-+..+......+. |+....||.
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078 250 GEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred CCHHHHHHCCCCCCCCCHHHC---CCEEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHH
T ss_conf 413344404767433502225---858993479978999999756536656136366446188
No 319
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=68.36 E-value=2 Score=22.97 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCH
Q ss_conf 9779860233557777766413-88632787213322221111000
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEAS-DNRSQIVVADINNEMLSVGRDRA 115 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~-~~~~~v~giD~s~~Ml~~a~~r~ 115 (265)
+.++-|-|||.|.+.--+.-.. +....+++.|++++-|+.|++++
T Consensus 52 p~tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~~al~LA~~NL 97 (249)
T pfam11599 52 EISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPIELAADNL 97 (249)
T ss_pred CCCEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 7303305777118999999853157877774258878999998645
No 320
>pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts.
Probab=68.17 E-value=3.1 Score=21.72 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=53.1
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEE
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345-7554467403664
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FEANSFDACTLAF 148 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~d~sfD~V~~sf 148 (265)
+..++||+|.|.- .++....++...|+++|.-+-.--.+ .+...-.|+++|...-. .-....|.|+|-|
T Consensus 822 ~~~h~LDLGTGPE---aRiLsliP~~~pVTm~D~RP~aep~g-------cw~~~T~fl~~dYl~~~~~~g~~~D~vtcil 891 (1289)
T pfam06016 822 DLKHWLDLGTGPE---ARILSLIPPTLPVTMCDTRPFAEPSG-------CWNAFTDFLSGDYLVTAVWLGTRADSVTCIL 891 (1289)
T ss_pred CCCEEEEECCCCC---CEEEEECCCCCCEEEECCCCCCCHHH-------HHHHHHHHHCCCCCCEEEEECCCCCEEEEEE
T ss_conf 7455787058865---22454159998516853777620222-------3445556630252110178435776353320
Q ss_pred EECC-----CHHHHHHHCCCCHHCCC-CCEEEEEECCC
Q ss_conf 2013-----21344320121000485-21177630554
Q gi|254780624|r 149 GIRN-----MPHITLVLQEIYRILKC-GGRLLVLEFSE 180 (265)
Q Consensus 149 ~l~~-----~~d~~~~l~e~~RvLKp-GG~~~i~df~~ 180 (265)
.|-- --+...+++++.+++.+ ++..+.+....
T Consensus 892 sLGAAaA~a~mtl~a~~~qli~~i~~a~~~~l~lQlNc 929 (1289)
T pfam06016 892 SLGAAAAGAGMTLHAGVQQLISQIVDASVKTLWLQLNC 929 (1289)
T ss_pred EHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 00245513787399999999999874545389999058
No 321
>KOG2782 consensus
Probab=65.19 E-value=2.2 Score=22.60 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=63.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC----
Q ss_conf 9998520644679977986023355777776641388632787213322221111000001122222222222333----
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET---- 133 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~---- 133 (265)
..+++.+.|.++. ..+|.--|.|--+..+.++.+ ..+++++|-.|-.-+.|+.... .-..+.+.-+.+....
T Consensus 33 devl~~lspv~g~--sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~-el~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782 33 DEVLDILSPVRGR--SFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSD-ELMHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred HHHHHHCCCCCCC--EEEEEECCCCCCHHHHHHHCC-HHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHH
T ss_conf 6589872777886--478875057742078887472-7664000458689999987557-55146699998516777999
Q ss_pred ---CCCCCCCCCCCEEEEEECC--CHHHHHHHC
Q ss_conf ---4575544674036642013--213443201
Q gi|254780624|r 134 ---LPFEANSFDACTLAFGIRN--MPHITLVLQ 161 (265)
Q Consensus 134 ---lp~~d~sfD~V~~sf~l~~--~~d~~~~l~ 161 (265)
-.+.++++|.+.+-||-.. +.++++.+.
T Consensus 109 ~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGFS 141 (303)
T KOG2782 109 IADTGLLDVGVDGILMDLGCSSMQVDNPERGFS 141 (303)
T ss_pred HHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCE
T ss_conf 998187757755487604765110378555623
No 322
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.74 E-value=11 Score=18.09 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=53.9
Q ss_pred CEEEECCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEE
Q ss_conf 7798602335-577777664138863278721332222111100000112222222222233345755-44674036642
Q gi|254780624|r 72 YRVLDVAGGT-GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA-NSFDACTLAFG 149 (265)
Q Consensus 72 ~~iLDiGcGT-G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d-~sfD~V~~sf~ 149 (265)
.||.++|-|- =+++..|+++. ..++++|+.+. .|+ ..+++..-|..+....= .--|+| |+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a~---------~g~~~v~DDitnP~~~iY~~A~lI---YS 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TAP---------EGLRFVVDDITNPNISIYEGADLI---YS 76 (129)
T ss_pred CCEEEECCCHHHHHHHHHHHCC---CCEEEEECCCC---CCC---------CCCEEEECCCCCCCHHHHHCCCCE---EE
T ss_conf 8379981411799999999748---86899852301---376---------553388724779647776270012---66
Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 01321344320121000485211776
Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
+|--++...++-++.+.++ ..++|
T Consensus 77 iRpppEl~~~ildva~aVg--a~l~I 100 (129)
T COG1255 77 IRPPPELQSAILDVAKAVG--APLYI 100 (129)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCEEE
T ss_conf 2798899899999998609--97899
No 323
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=64.60 E-value=5.8 Score=19.96 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=11.9
Q ss_pred HHHHHCCCCHHCCCCCEEEEEECC
Q ss_conf 443201210004852117763055
Q gi|254780624|r 156 ITLVLQEIYRILKCGGRLLVLEFS 179 (265)
Q Consensus 156 ~~~~l~e~~RvLKpGG~~~i~df~ 179 (265)
...+++++.++||+|- ++|++-+
T Consensus 98 i~~a~~~I~~~l~~~~-lVIi~ST 120 (415)
T PRK11064 98 VEAAAKSIAPVLKKGD-LVILEST 120 (415)
T ss_pred HHHHHHHHHHHCCCCC-EEEECCC
T ss_conf 8889999997526886-7996378
No 324
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=63.97 E-value=12 Score=18.01 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=50.6
Q ss_pred CEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC----CCCCCCCCCEE
Q ss_conf 779860233-5577777664138863278721332222111100000112222222222233345----75544674036
Q gi|254780624|r 72 YRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP----FEANSFDACTL 146 (265)
Q Consensus 72 ~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp----~~d~sfD~V~~ 146 (265)
.+|+=+|.| .|...-.+.+.. +..++.+|.+++.++.+|+. | .+...|||.+.. ..-+.-.++++
T Consensus 400 ~~VII~G~GRvGq~var~L~~~--gi~~vviD~d~~~V~~~r~~----G----~~v~yGDat~~~vL~~AGi~~Ar~vVi 469 (615)
T PRK03562 400 PRVIIAGFGRFGQIVGRLLLSS--GVKMVVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESAGAAKAEVLIN 469 (615)
T ss_pred CCEEEEECCCCHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC----C----CEEEEECCCCHHHHHHCCCCCCCEEEE
T ss_conf 9989990280469999999978--99879997999999999967----9----908976899999998679140688999
Q ss_pred EEEECCCHHHHHHHC--CCCHHCCCCCEEE
Q ss_conf 642013213443201--2100048521177
Q gi|254780624|r 147 AFGIRNMPHITLVLQ--EIYRILKCGGRLL 174 (265)
Q Consensus 147 sf~l~~~~d~~~~l~--e~~RvLKpGG~~~ 174 (265)
+ ++|++.+.+ +..|-+.|.=.++
T Consensus 470 a-----idd~~~~~~iv~~~r~~~P~l~Ii 494 (615)
T PRK03562 470 A-----IDDPQTNLQLTELVKEHFPHLQII 494 (615)
T ss_pred E-----ECCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9-----498999999999999758998699
No 325
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=63.41 E-value=3.9 Score=21.06 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=11.5
Q ss_pred EEEECCHHHHHHHHHHH
Q ss_conf 79860233557777766
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIA 89 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~ 89 (265)
+|| ++||+|-.+..++
T Consensus 4 kIl-VACGsGIATSTvv 19 (94)
T PRK10310 4 KII-VACGGAVATSTMA 19 (94)
T ss_pred EEE-EECCCCHHHHHHH
T ss_conf 599-9858837599999
No 326
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=63.21 E-value=12 Score=17.91 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=76.6
Q ss_pred HHHHHHCCC-CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC-CCCC---
Q ss_conf 998520644-67997798602335577777664138863278721332222111100000112222222222-2333---
Q gi|254780624|r 59 AMVTNLNPR-KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA-NAET--- 133 (265)
Q Consensus 59 ~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~-da~~--- 133 (265)
+++...++- .++.--|+==|.|+|-+|---++..+ +--.++++.+.+.-|+.+-......|---+.| ||..
T Consensus 288 ~~L~~~~~~~~g~~~~IiTN~GG~Gvia~D~~~~~G----l~L~~~~~~t~~~L~~~LP~~as~~NPVD~~GsDA~~~~Y 363 (457)
T TIGR02717 288 RLLSNQPLPPKGNRVAIITNAGGPGVIATDACEEVG----LELAELSEKTKEKLRNILPPEASIKNPVDVLGSDATAERY 363 (457)
T ss_pred HHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC----CEEECCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHH
T ss_conf 998358989988769999789616778765677749----7455585899999997476114778751255227898999
Q ss_pred -----CCCCCCCCCCCEEEEEECCCHH-HHHHHCCCCHHCCCCCEE
Q ss_conf -----4575544674036642013213-443201210004852117
Q gi|254780624|r 134 -----LPFEANSFDACTLAFGIRNMPH-ITLVLQEIYRILKCGGRL 173 (265)
Q Consensus 134 -----lp~~d~sfD~V~~sf~l~~~~d-~~~~l~e~~RvLKpGG~~ 173 (265)
.=++|+..|.|++-++---..+ ++.+.+-+.++.+.....
T Consensus 364 ~~~l~~v~eD~nVd~~~vv~~~~a~~~~~~~va~~~~~~~~~~~~k 409 (457)
T TIGR02717 364 AKALKIVAEDENVDGVVVVLTPTAMTDKPEEVAKGIIEVAKKSNEK 409 (457)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999998348888889996425302467999999887543036742
No 327
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=62.55 E-value=12 Score=17.83 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 9999997599537999855664999999811645
Q gi|254780624|r 228 FAAVISAAGFSNVSFTNYTNGVVALHSGWKCENI 261 (265)
Q Consensus 228 l~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~ 261 (265)
|...|.++||..|+.+.-..++--|..++||.++
T Consensus 11 l~reL~~~GYsGvevr~Tp~~teIiI~atrp~~V 44 (81)
T cd02413 11 LTRELAEDGYSGVEVRVTPTRTEIIIRATRTQNV 44 (81)
T ss_pred HHHHHHHCCCCCEEEEECCCCEEEEEEECCCCEE
T ss_conf 9999986787735999658861999995365155
No 328
>KOG2811 consensus
Probab=62.40 E-value=12 Score=17.81 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=38.9
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 79977986023355777776641388632787---21332222111100000112222222222233345
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVV---ADINNEMLSVGRDRAFKENLQDCITFIEANAETLP 135 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~g---iD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp 135 (265)
.+..-..+.|||-|.++.+++...+. ..++- +|-+..=++.-+. .+......|+-+..|+++|.
T Consensus 181 ~~~~~~vEFGAGrg~Ls~~vs~~l~~-~~~~l~vlvdR~s~R~K~D~k--~~~~~~~vi~R~riDI~dLk 247 (420)
T KOG2811 181 APSSCFVEFGAGRGELSRWVSDCLQI-QNVYLFVLVDRKSSRLKFDRK--LRNKNSLVIKRIRIDIEDLK 247 (420)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCHHHHHHHH--HHCCCCCHHHEEEEEHHHCC
T ss_conf 87625899668702899999998534-657999852012024431055--52268612403572087638
No 329
>PRK10867 signal recognition particle protein; Provisional
Probab=62.00 E-value=13 Score=17.77 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=58.2
Q ss_pred CCCEEEECCH-HHHHHH--HHHHHHCC----CCCEEEEECCC-CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC------
Q ss_conf 9977986023-355777--77664138----86327872133-2222111100000112222222222233345------
Q gi|254780624|r 70 KDYRVLDVAG-GTGDVA--FRIAEASD----NRSQIVVADIN-NEMLSVGRDRAFKENLQDCITFIEANAETLP------ 135 (265)
Q Consensus 70 ~~~~iLDiGc-GTG~~~--~~l~~~~~----~~~~v~giD~s-~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp------ 135 (265)
++..|+=+|- |.|-.+ -.||.++. ...-++++|.- +..+++-+.-+.+ -+|.+...+.+.-|
T Consensus 99 ~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~----~~v~~~~~~~~~dp~~ia~~ 174 (453)
T PRK10867 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQ----VGVDFFPSDVGQKPVDIVNA 174 (453)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH----CCCCEECCCCCCCHHHHHHH
T ss_conf 99699997468885185899999999973898379855887705899999999985----19804367889988999999
Q ss_pred ----CCCCCCCCCEEEEE--ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf ----75544674036642--01321344320121000485211776305544
Q gi|254780624|r 136 ----FEANSFDACTLAFG--IRNMPHITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 136 ----~~d~sfD~V~~sf~--l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
+..+.||+|.+--+ +|.=.+.-.-|+++.++++|.-.++++|-..-
T Consensus 175 a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G 226 (453)
T PRK10867 175 ALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG 226 (453)
T ss_pred HHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9999997799999997876012108889999999876378713797432235
No 330
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=61.73 E-value=7 Score=19.39 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=49.3
Q ss_pred EEECCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CCC---CCCCCCEEEE
Q ss_conf 98602335577777664138-863278721332222111100000112222222222233345-755---4467403664
Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASD-NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FEA---NSFDACTLAF 148 (265)
Q Consensus 74 iLDiGcGTG~~~~~l~~~~~-~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~d---~sfD~V~~sf 148 (265)
++=+|. |.+...+++... .+..++.+|..++.++.++++ ....+.||+.+.. ++. +.-..+.++
T Consensus 420 vii~G~--Gr~G~~va~~L~~~~~~~vvid~d~~~v~~~~~~--------g~~v~~GDa~~~~~L~~agi~~A~~vvit- 488 (558)
T PRK10669 420 ALLVGY--GRVGSLLGEKLLASGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLT- 488 (558)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCEEEEECCCCHHHHHHCCCCCCCEEEEE-
T ss_conf 899898--8669999999998799889998989999999968--------99799978998899985791324999998-
Q ss_pred EECCCHHHHHH--HCCCCHHCCCCCEEEE
Q ss_conf 20132134432--0121000485211776
Q gi|254780624|r 149 GIRNMPHITLV--LQEIYRILKCGGRLLV 175 (265)
Q Consensus 149 ~l~~~~d~~~~--l~e~~RvLKpGG~~~i 175 (265)
++|.+.. +-+..|-+.|+-.++.
T Consensus 489 ----~~d~~~~~~iv~~~r~~~p~~~Iia 513 (558)
T PRK10669 489 ----IPNGYEAGEIVASAREKNPDIEIIA 513 (558)
T ss_pred ----ECCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf ----1988999999999998786986999
No 331
>KOG3924 consensus
Probab=59.42 E-value=11 Score=18.26 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=67.5
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC------HHC-CCC-CCCCCCCC
Q ss_conf 9999852064467997798602335577777664138863278721332222111100------000-112-22222222
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR------AFK-ENL-QDCITFIE 128 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r------~~~-~~~-~~~i~~~~ 128 (265)
+...++.++..+++ .-.|+|+|-|......+-..+- .+-+|+.++..--..|..+ ..+ .|. ...++.++
T Consensus 181 l~si~dEl~~g~~D--~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~ 257 (419)
T KOG3924 181 LRSIVDELKLGPAD--VFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIH 257 (419)
T ss_pred HHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHCC-CCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 99999996369887--2347776510236788875340-01034054158478899999999999998477867214036
Q ss_pred CCCCCCCCC---CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 223334575---5446740366420132134432012100048521177630
Q gi|254780624|r 129 ANAETLPFE---ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 129 ~da~~lp~~---d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
++..+..+- ....+++++. -++.-|+...-+.|+..-+|+|-+++-.+
T Consensus 258 gsf~~~~~v~eI~~eatvi~vN-N~~Fdp~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924 258 GSFLDPKRVTEIQTEATVIFVN-NVAFDPELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CCCCCHHHHHHHHHCCEEEEEE-CCCCCHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 3547888899886305288870-33479888876488896388765685463
No 332
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.29 E-value=14 Score=17.56 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=8.0
Q ss_pred CEEEEECCCCCCCCCC
Q ss_conf 3278721332222111
Q gi|254780624|r 96 SQIVVADINNEMLSVG 111 (265)
Q Consensus 96 ~~v~giD~s~~Ml~~a 111 (265)
.+++.+++|+-+|+.+
T Consensus 164 ~~~~V~ElSSfql~~~ 179 (487)
T PRK03369 164 AELLAVELSSFQLHWA 179 (487)
T ss_pred CCEEEEEECCCCCCCC
T ss_conf 8589998136543446
No 333
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=58.50 E-value=14 Score=17.38 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=45.7
Q ss_pred CCCEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-----CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99779860233--55777776641388632787213322221111000001122-----222222222333457554467
Q gi|254780624|r 70 KDYRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-----DCITFIEANAETLPFEANSFD 142 (265)
Q Consensus 70 ~~~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-----~~i~~~~~da~~lp~~d~sfD 142 (265)
++.||+=+|+| .+.++..|++.. .+|+.+.-++ .+ .+.+.|+. ...++..-.+...+-+-..||
T Consensus 4 ~~~kI~IiGaGAiG~~~a~~L~~aG---~~V~li~r~~--~~----ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D 74 (313)
T PRK06249 4 ETPRIAIIGTGAIGGFYGAMLARAG---FDVHFLLRSD--YE----AVRENGLQVDSVHGDFHLPQVQAYRSAEDMPPCD 74 (313)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CCEEEEECCH--HH----HHHHCCEEEEECCCCEEECCCEEECCHHHCCCCC
T ss_conf 9888999991499999999999669---9569996755--99----9986885999669828976840236977839965
Q ss_pred CCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 4036642013213443201210004852117763
Q gi|254780624|r 143 ACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 143 ~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
+|+++ ... .+.+.+++.+.+++.|++.++.+
T Consensus 75 ~viv~--vKs-~~~~~~~~~l~~~~~~~t~il~l 105 (313)
T PRK06249 75 WVLVG--LKT-TANALLAPLIPQVAAPGAKVLLL 105 (313)
T ss_pred EEEEE--CCC-CCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 89995--366-77899999878644899589994
No 334
>KOG0022 consensus
Probab=58.15 E-value=11 Score=18.26 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=56.8
Q ss_pred HHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC------
Q ss_conf 85206446799779860233-55777776641388632787213322221111000001122222222222333------
Q gi|254780624|r 61 VTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET------ 133 (265)
Q Consensus 61 i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~------ 133 (265)
++....+++ ..+.=.|+| -|.....-++..+ -++|+|+|++++-.+.|++ .|...-|+-. |..+
T Consensus 185 ~~~Akv~~G--stvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~--d~~~~i~evi 255 (375)
T KOG0022 185 WNTAKVEPG--STVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE----FGATEFINPK--DLKKPIQEVI 255 (375)
T ss_pred HHHCCCCCC--CEEEEEECCHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHH----CCCCEECCHH--HCCCCHHHHH
T ss_conf 321346779--87999905457889987677618-6517998558789899876----1950223703--3053399999
Q ss_pred CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCC-CEEEEEECCC
Q ss_conf 4575544674036642013213443201210004852-1177630554
Q gi|254780624|r 134 LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCG-GRLLVLEFSE 180 (265)
Q Consensus 134 lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpG-G~~~i~df~~ 180 (265)
...-|.-+| |++. ..-...++++++...+.| |.-+++-...
T Consensus 256 ~EmTdgGvD-----ysfE-c~G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022 256 IEMTDGGVD-----YSFE-CIGNVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred HHHHCCCCE-----EEEE-ECCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 998668720-----8999-55898999999997305877599997547
No 335
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=57.48 E-value=15 Score=17.27 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CC---CCCCCCCEEE
Q ss_conf 79860233-5577777664138863278721332222111100000112222222222233345-75---5446740366
Q gi|254780624|r 73 RVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FE---ANSFDACTLA 147 (265)
Q Consensus 73 ~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~---d~sfD~V~~s 147 (265)
+|+=+|.| .|...-.+.+.. +..++.+|.+++.++.+|+. | .+...||+.+.. ++ -+.-..++++
T Consensus 402 ~VII~G~GR~Gq~var~L~~~--gi~~vviD~d~~~V~~~r~~----G----~~v~yGDat~~~vL~~AGi~~A~~vVia 471 (602)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAAGAEKAEAIVIT 471 (602)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC----C----CEEEEECCCCHHHHHHCCCCCCCEEEEE
T ss_conf 989978875689999999978--99989997867999999978----9----9089758999999986790405889998
Q ss_pred EEECCCHHHHHHHC--CCCHHCCCCCEEEE
Q ss_conf 42013213443201--21000485211776
Q gi|254780624|r 148 FGIRNMPHITLVLQ--EIYRILKCGGRLLV 175 (265)
Q Consensus 148 f~l~~~~d~~~~l~--e~~RvLKpGG~~~i 175 (265)
++|++.+.+ +..|-+.|+=.++.
T Consensus 472 -----i~d~~~~~~iv~~~r~~~P~l~I~a 496 (602)
T PRK03659 472 -----CNEPEDTMKLVELCQQHFPHLHILA 496 (602)
T ss_pred -----ECCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf -----2989999999999998786996999
No 336
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=57.00 E-value=13 Score=17.78 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 9852064467997798602335577777664138863278721332222111100000112222222222233345-755
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FEA 138 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~d 138 (265)
+.+.+.....+..+|+=+|.| .+...+++......+|+-+|..++-.+...++ + +++..++||+.+.. +.+
T Consensus 221 ~~~~~g~~~~~~~~v~I~Ggg--~ig~~la~~L~~~~~v~iIe~d~~~~~~la~~-----l-~~~~Vi~GD~td~~~L~e 292 (455)
T PRK09496 221 VMSELGRLEKPVKRIMIAGGG--NIGLYLAKLLEKGYSVKLIERDPERAEELAEE-----L-PNTLVLHGDGTDQELLEE 292 (455)
T ss_pred HHHHHCCCCCCCCEEEEECCC--HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-----C-CCCEEEECCCCCHHHHHH
T ss_conf 999858654666518998786--99999999874088389970898999999974-----7-853999788768899976
Q ss_pred ---CCCCCCEEE
Q ss_conf ---446740366
Q gi|254780624|r 139 ---NSFDACTLA 147 (265)
Q Consensus 139 ---~sfD~V~~s 147 (265)
+..|++.+.
T Consensus 293 ~gi~~aD~~ia~ 304 (455)
T PRK09496 293 EGIDEADAFIAL 304 (455)
T ss_pred HCCCCCCEEEEE
T ss_conf 364556489990
No 337
>PRK09242 tropinone reductase; Provisional
Probab=56.24 E-value=10 Score=18.29 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+.++|=.|++.| .++..+++ .+++|+.+|.+++-++.+.+.+.+.....++.++.+|..+
T Consensus 10 gK~alITGgs~GIG~a~a~~la~---~Ga~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~ 72 (258)
T PRK09242 10 GQTALITGASKGIGLAIARELLG---LGADVLIVARDADALAQARDELAEEFPERELHGLAADVSD 72 (258)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 99999948486899999999998---7998999969889999999999864479729999930799
No 338
>PRK07831 short chain dehydrogenase; Provisional
Probab=55.65 E-value=11 Score=18.04 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCEEEECCHH-HH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 9779860233-55---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGG-TG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcG-TG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+.++|=.|++ +| .++..+++ .+++|+.+|.+++-+..+.+++.......++..+.+|..+
T Consensus 16 gKvalVTGgsg~GIG~a~a~~la~---~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~ 79 (261)
T PRK07831 16 GKVVVVTAAAGTGIGSATARRALE---EGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTS 79 (261)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 984999499964789999999998---7998999808777789999999984387728999756899
No 339
>PRK06940 short chain dehydrogenase; Provisional
Probab=55.39 E-value=8.7 Score=18.82 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=55.7
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC----C-----CCCCCC
Q ss_conf 7986023355777776641388632787213322221111000001122222222222333457----5-----544674
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF----E-----ANSFDA 143 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~----~-----d~sfD~ 143 (265)
||+=+| |+|-+-..+++.....++|+.+|.+++-++.+.+.+.+.+ .++..+.+|..+..- - -...|.
T Consensus 6 kV~v~t-Ga~GIG~aiA~~la~Ga~vvi~~~~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~l~~~~~~~G~idi 82 (277)
T PRK06940 6 EVVVVI-GAGGMGQAIARRVGSGKTVLLADYNEENLQAVARTLREAG--FDVITQQVDVSSRESVKALAQTAATLGAVTG 82 (277)
T ss_pred CEEEEC-CCCHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 299997-8169999999999819989999898899999999987228--8299998257998999999999998699879
Q ss_pred CEEEEEECCC------------HHHHHHHCCCCHHCCCCCEEEEE
Q ss_conf 0366420132------------13443201210004852117763
Q gi|254780624|r 144 CTLAFGIRNM------------PHITLVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 144 V~~sf~l~~~------------~d~~~~l~e~~RvLKpGG~~~i~ 176 (265)
++..=++... ......+++..+++.++|..+++
T Consensus 83 LVnnAG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~i 127 (277)
T PRK06940 83 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 127 (277)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 998886786657899999886688999999999999849828998
No 340
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=55.03 E-value=13 Score=17.73 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=34.9
Q ss_pred EEEECCHH-HHHHHHHHHHHCCCCCEEEE-ECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 79860233-55777776641388632787-21332222111100000112222222222233345755446740366
Q gi|254780624|r 73 RVLDVAGG-TGDVAFRIAEASDNRSQIVV-ADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 73 ~iLDiGcG-TG~~~~~l~~~~~~~~~v~g-iD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
+|.=+||| -|..-........+..++++ +|.+++..+...++. ++.. ..+.+++ +++..+|+|.++
T Consensus 2 ki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~-------~~~~-~~~~~~~-l~~~~iD~v~I~ 69 (120)
T pfam01408 2 RVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESF-------GVPA-YSDLEEL-LADPDVDAVSVA 69 (120)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH-------CCCE-ECCHHHH-HHCCCCCEEEEC
T ss_conf 899990779999999999855999789999829999999999983-------9967-8869999-737788989990
No 341
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=54.70 E-value=13 Score=17.70 Aligned_cols=101 Identities=23% Similarity=0.260 Sum_probs=46.7
Q ss_pred CCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99779860233-55777776641388632787213322221111000001122222222222333457554467403664
Q gi|254780624|r 70 KDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265)
Q Consensus 70 ~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265)
.+.++|=+|.| +|..+.......+. .+|+ +..--++.|++-+.+.+ . .....++++-.=+.+|+|+++-
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~-~~i~---IaNRT~erA~~La~~~~----~--~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV-KKIT---IANRTLERAEELAKKLG----A--EAVALEELLEALAEADVVISST 246 (414)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEE---EECCCHHHHHHHHHHHC----C--EEECHHHHHHHHHHCCEEEEEC
T ss_conf 46769998651899999999985898-7799---97587899999999838----7--0221877887652079999906
Q ss_pred EECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 20132134432012100048521177630554455
Q gi|254780624|r 149 GIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 149 ~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
+- |++.---..+.+.+++--+++++|++.|.+
T Consensus 247 sa---~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 247 SA---PHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred CC---CCCCCCHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99---855407888998874116759998269999
No 342
>PRK05580 primosome assembly protein PriA; Validated
Probab=54.59 E-value=17 Score=16.97 Aligned_cols=115 Identities=12% Similarity=0.103 Sum_probs=57.6
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC---CCCCCCCCCCCCCCEE--
Q ss_conf 77986023355777776641388632787213322221111000001122222222222---3334575544674036--
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEAN---AETLPFEANSFDACTL-- 146 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d---a~~lp~~d~sfD~V~~-- 146 (265)
..+--+|-||..+..++.+.+ |++.|.-+|-....-....+++...-....++.+.|. +.-+.|++ +++|.+
T Consensus 453 ~~l~~~g~Gteri~eel~~~F-P~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTqmiakG~df~~--v~lv~vld 529 (699)
T PRK05580 453 TDLRAVGVGTERTEEELARLF-PGARVLRIDRDTTRRKGALEQLLEDFARGEADILVGTQMLAKGHDFPN--VTLVGVLD 529 (699)
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCC--EEEEEEEC
T ss_conf 752411168599999999778-999889984755678631688999974689878977733455677776--26998732
Q ss_pred EEEECCCHH---HHHHHCCCCHHC------CCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 642013213---443201210004------85211776305544551011234
Q gi|254780624|r 147 AFGIRNMPH---ITLVLQEIYRIL------KCGGRLLVLEFSEVQGPVFKKIY 190 (265)
Q Consensus 147 sf~l~~~~d---~~~~l~e~~RvL------KpGG~~~i~df~~p~~~~~~~~~ 190 (265)
+-.+-+.|| .+++++-+.++. +.+|.++|. ...|+++.++.+.
T Consensus 530 aD~~l~~pd~ra~E~~~qll~qvagragr~~~~g~viiQ-t~~p~~~~~~~l~ 581 (699)
T PRK05580 530 ADTGLFSPDFRAAERTFQLLTQVAGRAGRAEKPGEVLIQ-TYEPEHPLLQALL 581 (699)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE-ECCCCCHHHHHHH
T ss_conf 265354888347999999999998765567889879999-3799989999999
No 343
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=54.23 E-value=17 Score=16.94 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=31.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCCCCCCC
Q ss_conf 999852064467997798602335577777664138863278721---33222211110
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVAD---INNEMLSVGRD 113 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD---~s~~Ml~~a~~ 113 (265)
+.+.+.+.... ...++=-|+||+.+-..+.....++.+|..+. +++.+.+.|+.
T Consensus 39 ~~L~~~~~~~~--~~~v~~~gsgt~a~ea~~~n~~~~~~kvlv~~~G~fg~r~~~~a~~ 95 (356)
T cd06451 39 EGLRYVFQTEN--GLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAER 95 (356)
T ss_pred HHHHHHHCCCC--CCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHH
T ss_conf 99999958999--8489995770899999998526888814788530405416764411
No 344
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=54.00 E-value=17 Score=16.91 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=17.4
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 4467403664201321344320121000485211776
Q gi|254780624|r 139 NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
..+|+|+++ .. -.+.+.+++.+.-.+.|++.++.
T Consensus 72 ~~~D~viv~--vK-a~~~~~a~~~l~~~l~~~t~il~ 105 (341)
T PRK08229 72 ATADLVLVT--VK-SAATADAAAALAGHARPGAVVVS 105 (341)
T ss_pred CCCCEEEEE--EC-CCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 899989997--07-57889999999864389968999
No 345
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=53.83 E-value=6.1 Score=19.80 Aligned_cols=106 Identities=22% Similarity=0.259 Sum_probs=48.1
Q ss_pred CEEEECCHHH-H-HHHHHHHHHCCCCCEEEEECCCCCCCCCC---CCCHHCCCCCCCCCC-CCCC---CCCCCCCCCCCC
Q ss_conf 7798602335-5-77777664138863278721332222111---100000112222222-2222---333457554467
Q gi|254780624|r 72 YRVLDVAGGT-G-DVAFRIAEASDNRSQIVVADINNEMLSVG---RDRAFKENLQDCITF-IEAN---AETLPFEANSFD 142 (265)
Q Consensus 72 ~~iLDiGcGT-G-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a---~~r~~~~~~~~~i~~-~~~d---a~~lp~~d~sfD 142 (265)
.+|-=+|-|- | -++..++++ +.+|+|+||.+.-++.- +..+.+......++- +... |..-|-.-...|
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~---G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA---GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECD 86 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHC---CCCEEEEECCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEECCHHHCCCCC
T ss_conf 2899982464457889999876---9955757578899888757864254686889999998639715756855625488
Q ss_pred CCEEEE--EE--CCCHH---HHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf 403664--20--13213---44320121000485211776305544
Q gi|254780624|r 143 ACTLAF--GI--RNMPH---ITLVLQEIYRILKCGGRLLVLEFSEV 181 (265)
Q Consensus 143 ~V~~sf--~l--~~~~d---~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265)
+..++- -+ .+-|| .+.+.+.+.++||+| .++|+|-+.|
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG-~LVIlEST~~ 131 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKG-DLVILESTTP 131 (436)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CEEEEECCCC
T ss_conf 89999357767899988489999999999756778-8899964789
No 346
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=53.72 E-value=17 Score=16.88 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred HHCCCCCCCCEEEECC--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-C-CC-C
Q ss_conf 2064467997798602--3355777776641388632787213322221111000001122222222222333-4-57-5
Q gi|254780624|r 63 NLNPRKSKDYRVLDVA--GGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-L-PF-E 137 (265)
Q Consensus 63 ~l~~~~~~~~~iLDiG--cGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-l-p~-~ 137 (265)
....+++ .+||=.| .|-|.++..|++..+- .++++--|++-.+.+ .+.+...-|++...|..+ + .+ .
T Consensus 137 ~~~l~~g--~~VLv~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~d~~~~v~~~t~ 208 (326)
T COG0604 137 RAGLKPG--ETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HCCCCCC--CEEEEECCCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHH----HHCCCCEEEECCCCCHHHHHHHHHC
T ss_conf 6176999--9799977854699999999998499--589998175788999----8739988970564248999999837
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 54467403664201321344320121000485211776305
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
..-+|+|..+-+ ...+.+..+.|+|+|+++..-.
T Consensus 209 g~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCCCEEEECCC-------HHHHHHHHHHHCCCCEEEEEEC
T ss_conf 998788997986-------7999999997425958999806
No 347
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=53.36 E-value=7.9 Score=19.06 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCEEEECCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-----CCCCCCCC
Q ss_conf 9779860233557777766413---886327872133222211110000011222222222223334-----57554467
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEAS---DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-----PFEANSFD 142 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~---~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-----p~~d~sfD 142 (265)
+.+||=-| |||.+..++.++. ++ .+++-+|.+|.-+..-...+.......++.+..||..+. .+.+-..|
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCEEEEEC-CCCCHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 98899968-987367999999985498-7899961763779999999986278751689963534689999998638886
Q ss_pred CCEEEEEECCCH----HHHHHHC
Q ss_conf 403664201321----3443201
Q gi|254780624|r 143 ACTLAFGIRNMP----HITLVLQ 161 (265)
Q Consensus 143 ~V~~sf~l~~~~----d~~~~l~ 161 (265)
.|.-+=++.|+| ||..+++
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~ 350 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIK 350 (588)
T ss_pred EEEEHHHHCCCCCHHCCHHHHHH
T ss_conf 68875555368631018899998
No 348
>PRK06914 short chain dehydrogenase; Provisional
Probab=52.81 E-value=13 Score=17.63 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=33.8
Q ss_pred EEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 7986023355---77777664138863278721332222111100000112222222222233
Q gi|254780624|r 73 RVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265)
Q Consensus 73 ~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265)
.+|=-||++| .++..+++. +++|++.+.+++-++...+.+...+...++.....|+.
T Consensus 5 ~alITGassGIG~a~A~~la~~---G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Dvt 64 (280)
T PRK06914 5 IAIITGASSGFGLLTTLELAKK---DYLVIATMRNLEKQENLISQAAQLNLSQNIKVQQLDVT 64 (280)
T ss_pred EEEEECCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 8999073449999999999987---99899998988999999999996499976699968899
No 349
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.79 E-value=9.9 Score=18.44 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=50.1
Q ss_pred EEEECCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC----------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 798602335--577777664138863278721332222111100000112----------22222222223334575544
Q gi|254780624|r 73 RVLDVAGGT--GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL----------QDCITFIEANAETLPFEANS 140 (265)
Q Consensus 73 ~iLDiGcGT--G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~----------~~~i~~~~~da~~lp~~d~s 140 (265)
+|-=||+|| ..++..++.. +.+|+..|++++.++.+++++.+.-. ..++++ ..|.+.+ ..
T Consensus 7 ~VaViGAG~MG~gIA~~~a~~---G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~-~~~l~a~----~~ 78 (310)
T PRK06130 7 NLAIIGAGAMGSGIAALFASK---GLDVVLIDPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRM-DAGLEAA----CG 78 (310)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEE-CCCHHHH----CC
T ss_conf 898978779999999999858---998899979999999999999998653276669998741021-3788896----68
Q ss_pred CCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 6740366420132134432012100048521177
Q gi|254780624|r 141 FDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 141 fD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
.|+|.=+ ...++.-+.+.++++-.+++|+-.+.
T Consensus 79 aDlViEa-v~E~l~iK~~lf~~le~~~~~~~IlA 111 (310)
T PRK06130 79 ADLVIEA-VPEKLDLKRDIFARLDTLCDPQTIFA 111 (310)
T ss_pred CCEEEEC-CCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 9999988-81778999999999860689883899
No 350
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=52.76 E-value=17 Score=17.00 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=43.0
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 98602335577777664138863278721332222111100000112222222222233345755446740366420132
Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNM 153 (265)
Q Consensus 74 iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~ 153 (265)
++ +|+|++.....+.+...+ .++.-+.++-.+-+.+-+ ..+. +...-+.+.+.......|+|+++ |=
T Consensus 67 vl-~gnGs~e~I~ll~~l~~~-~~v~i~~PtfseY~~a~~---~~g~----~v~~~~~~~~~~~~~~~d~v~l~----nP 133 (330)
T PRK05664 67 LL-PVAGSQAAIQALPRLRAP-GRVGVLSPCYAEHAHAWR---RAGH----QVRELDEAEVEAALDSLDVLVVV----NP 133 (330)
T ss_pred EE-EECCHHHHHHHHHHHHCC-CEEEECCCCHHHHHHHHH---HCCC----EEEECCHHHHHHCCCCCCEEEEC----CC
T ss_conf 99-941699999999997489-946884888799999999---8699----88976877776226788989982----79
Q ss_pred HHH------HHHHCCCCHHCCCCCEEEEEE
Q ss_conf 134------432012100048521177630
Q gi|254780624|r 154 PHI------TLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 154 ~d~------~~~l~e~~RvLKpGG~~~i~d 177 (265)
.|| ...+.++...++..|.++|+|
T Consensus 134 NNPTG~~~~~~~l~~~~~~~~~~~~~lvvD 163 (330)
T PRK05664 134 NNPTGRRFDPARLLAWHARLAARGGWLVVD 163 (330)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 288668989999999999865319889997
No 351
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=52.38 E-value=8.2 Score=18.97 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCE
Q ss_conf 33557777766413886--3278721332222111100000112222222222233345-----7554467403
Q gi|254780624|r 79 GGTGDVAFRIAEASDNR--SQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-----FEANSFDACT 145 (265)
Q Consensus 79 cGTG~~~~~l~~~~~~~--~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-----~~d~sfD~V~ 145 (265)
.|+|.+-..+.++.-.. ..|+.+|.++.-+...+..........++++..+|..+.. +.+..+|.|.
T Consensus 5 GGaGFIGS~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~~~~~~~~DI~D~~~l~~~~~~~~~D~V~ 78 (280)
T pfam02719 5 GGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDPKLRFFIGDVRDRERLERAMEEYGVDTVF 78 (280)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 48867999999999968998899990887427789999886267898389981168989999998754999999
No 352
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.29 E-value=18 Score=16.74 Aligned_cols=21 Identities=0% Similarity=0.150 Sum_probs=9.5
Q ss_pred HHHHHHCCCCHHCCCCCEEEE
Q ss_conf 344320121000485211776
Q gi|254780624|r 155 HITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 155 d~~~~l~e~~RvLKpGG~~~i 175 (265)
+.+.+++.+...+.|+..++.
T Consensus 80 ~~~~a~~~l~~~~~~~t~il~ 100 (306)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIP 100 (306)
T ss_pred CHHHHHHHHHHHCCCCCEEEE
T ss_conf 779999999863399948999
No 353
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=52.13 E-value=11 Score=18.04 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 4467403664201321344320121000485211776
Q gi|254780624|r 139 NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
..+|+|...=.+-.-+-|...-+||..-.|||..++=
T Consensus 243 ~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVD 279 (356)
T COG3288 243 KEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVD 279 (356)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 4788899814458998743527999974489968998
No 354
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=51.66 E-value=17 Score=16.88 Aligned_cols=48 Identities=29% Similarity=0.415 Sum_probs=29.9
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE-EECCC
Q ss_conf 0001122222222222333457554467403664201321344320121000485211776-30554
Q gi|254780624|r 115 AFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV-LEFSE 180 (265)
Q Consensus 115 ~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i-~df~~ 180 (265)
+.+.|... .|+.+| ||| +||. ..++.+|+++.||+|.+|-=.| +|=+.
T Consensus 71 AV~rGa~~--~liv~D---lPF---------~sY~----~S~~~Al~nA~~v~~e~gA~avKLEGG~ 119 (267)
T TIGR00222 71 AVKRGAPN--ALIVTD---LPF---------MSYK----ESPEQALKNAARVLQETGADAVKLEGGE 119 (267)
T ss_pred HHHCCCCC--CEEEEC---CCH---------HHHH----CCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98547987--346633---740---------0011----2678899999999732377657620788
No 355
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.44 E-value=19 Score=16.65 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=13.7
Q ss_pred HHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 1344320121000485211776
Q gi|254780624|r 154 PHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 154 ~d~~~~l~e~~RvLKpGG~~~i 175 (265)
.+..++-.++++-++++|.+++
T Consensus 201 e~Y~~aK~~i~~~~~~~~~~v~ 222 (450)
T PRK02472 201 ENYVAAKWNIQKNQTEDDYLVL 222 (450)
T ss_pred HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999999999955996877999
No 356
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=51.13 E-value=19 Score=16.62 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=51.4
Q ss_pred CEEEECCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCC-----CCCCCCCC--CCCC----CCC
Q ss_conf 7798602335--577777664138863278721332222111100000112222-----22222223--3345----755
Q gi|254780624|r 72 YRVLDVAGGT--GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDC-----ITFIEANA--ETLP----FEA 138 (265)
Q Consensus 72 ~~iLDiGcGT--G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~-----i~~~~~da--~~lp----~~d 138 (265)
.+|-=+|+|+ +.++...+.. .+.+|+.+|++++.++.+.+++.+. +... +.-...+. ..+. +.+
T Consensus 310 ~kv~ViGaG~MG~gIA~~~a~~--aG~~V~l~D~~~e~l~~~~~~i~~~-l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~ 386 (706)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINPQGINHALKYSWDL-LDKKVKRRHMTPAERDKQMALISGTTDYRG 386 (706)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHCEEEECCHHH
T ss_conf 6799986473238999999998--6987999979999999999988999-999986189998999998622410044123
Q ss_pred -CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf -446740366420132134432012100048521177
Q gi|254780624|r 139 -NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 -~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
...|+|+=+ ...++.=+.+.++++-.+++|+..+.
T Consensus 387 ~~~~DlVIEA-v~E~~~~K~~v~~~le~~~~~~aIlA 422 (706)
T PRK11154 387 FKHADLVIEA-VFEDLALKQQMVADVEQNCAEHTIFA 422 (706)
T ss_pred HCCCCEEEEE-CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 1568879997-14528889999999996479885895
No 357
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.77 E-value=19 Score=16.61 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=58.7
Q ss_pred CCCEEEECCH-HHHHHH--HHHHHHCCCCC---EEEEECC-CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-------
Q ss_conf 9977986023-355777--77664138863---2787213-32222111100000112222222222233345-------
Q gi|254780624|r 70 KDYRVLDVAG-GTGDVA--FRIAEASDNRS---QIVVADI-NNEMLSVGRDRAFKENLQDCITFIEANAETLP------- 135 (265)
Q Consensus 70 ~~~~iLDiGc-GTG~~~--~~l~~~~~~~~---~v~giD~-s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp------- 135 (265)
.+..||=+|- |+|-.+ -.+|.++...+ -+.+.|- -...+++-+.-..+ .++.++.+.--.-|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er----~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER----LGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH----HCCEEECCCCCCCCHHHHHHH
T ss_conf 8679999934888637179999999997898699982334789999999999999----599278259999808999999
Q ss_pred ---CCCCCCCCCEEEE--EECCCHHHHHHHCCCCHHCCCCC------EEEEEECCCCCCCH
Q ss_conf ---7554467403664--20132134432012100048521------17763055445510
Q gi|254780624|r 136 ---FEANSFDACTLAF--GIRNMPHITLVLQEIYRILKCGG------RLLVLEFSEVQGPV 185 (265)
Q Consensus 136 ---~~d~sfD~V~~sf--~l~~~~d~~~~l~e~~RvLKpGG------~~~i~df~~p~~~~ 185 (265)
-..+.+|+|.+-- =|||=.|+-.-|+.+.||.+|.= .++++|-++-++.+
T Consensus 214 i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 214 IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHH
T ss_conf 9999976999999967554457366899999999984645689984289997756475689
No 358
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=50.45 E-value=19 Score=16.55 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=54.1
Q ss_pred CEEEECCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC-----CCCCC--CCC----CCCC
Q ss_conf 7798602335--577777664138863278721332222111100000112222222-----22223--334----5755
Q gi|254780624|r 72 YRVLDVAGGT--GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF-----IEANA--ETL----PFEA 138 (265)
Q Consensus 72 ~~iLDiGcGT--G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~-----~~~da--~~l----p~~d 138 (265)
.+|-=+|.|| +.++..++... ..|+.+|++++.++.++.++.+. +...++- ...+. ..+ .+.+
T Consensus 314 ~~v~ViGaG~MG~GIA~~~a~aG---~~V~l~D~~~e~l~~g~~~~~~~-~~~~v~~g~~~~~~~~~~l~ri~~~~~~~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMNEAAKL-LNKQVERGRIDGLKMAGVLSTITPTLDYAG 389 (715)
T ss_pred CEEEEECCCCCHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHCCCCCCCCHH
T ss_conf 27999787710799999999579---95799978999999999999999-999986489987999999956874154024
Q ss_pred -CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf -446740366420132134432012100048521177
Q gi|254780624|r 139 -NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 -~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
...|+|+=+ ...++.-+.++++++-.+++|+..+.
T Consensus 390 l~~~DlVIEA-V~E~l~~K~~vf~~l~~~~~~~aIlA 425 (715)
T PRK11730 390 FKDVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILA 425 (715)
T ss_pred HCCCCEEEEE-CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 3358889985-43658899999999986558753885
No 359
>PRK07062 short chain dehydrogenase; Provisional
Probab=50.28 E-value=15 Score=17.23 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=37.6
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++|=.|.+.| .++..+++ .+++|+.+|.+++-++.+.+.+.+.....++..+.+|..+
T Consensus 9 K~alITG~s~GIG~a~a~~la~---~Ga~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~ 70 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLE---AGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9899957577999999999998---7999999979889999999999873699659999757999
No 360
>PRK09273 hypothetical protein; Provisional
Probab=49.87 E-value=9.9 Score=18.45 Aligned_cols=52 Identities=23% Similarity=0.179 Sum_probs=31.5
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 986023355777776641388632787213322221111000001122222222222333457554
Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN 139 (265)
Q Consensus 74 iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~ 139 (265)
-.=-|||||.=+......+|.-.-=+.+|++...| ...| -.|+|-+|||..+
T Consensus 66 FVVTGCgTGqGamlAcNs~PgV~CG~~~~P~DAyL------------F~qI--NnGNaiSlP~akg 117 (211)
T PRK09273 66 FVVTGCGTGQGAMMALNSFPGVVCGYCIDPTDAYL------------FAQI--NNGNALSLPFAKG 117 (211)
T ss_pred EEEECCCCCHHHHHHHHCCCCCEEECCCCCCHHHH------------EEEE--CCCCEEEEECCCC
T ss_conf 79856876688999975389825403389433365------------0354--5996786321257
No 361
>PRK09186 flagellin modification protein A; Provisional
Probab=49.84 E-value=15 Score=17.25 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=37.5
Q ss_pred CEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 779860233557777766413-88632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEAS-DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~-~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
..+|=.|++.| +-..+++.+ ..+++|+.+|.+.+.++...+++.+.+ ..++.++.+|..+
T Consensus 5 K~~lVTGgs~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~-~~~v~~~~~Dvt~ 65 (255)
T PRK09186 5 KTILITGAGGL-IGSALVKAILEAGGIVIAADINKEALNKLLESLGTIE-KTKLTLVELDITD 65 (255)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEEECCCCC
T ss_conf 98999795868-9999999999879999999698899999999998705-9807999846899
No 362
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=49.62 E-value=17 Score=16.98 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=29.3
Q ss_pred EEEECCHHHHHHHHHHHHHC-C-CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC-CC---CCCCCCCCCCE
Q ss_conf 79860233557777766413-8-863278721332222111100000112222222222233-34---57554467403
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEAS-D-NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE-TL---PFEANSFDACT 145 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~-~-~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~-~l---p~~d~sfD~V~ 145 (265)
||| |-.|+|.+...|+++. . .+.+|+++|.+..-+.. ....++++++.+|.. +. ...-..+|.|.
T Consensus 3 kIL-VTGgaGFIGs~Lv~~Ll~~~~~~V~~~d~~~~~~~~-------~~~~~~~~~~~gDi~~~~~~~~~~~~~~D~V~ 73 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLTKRILETTDWEVYGMDMQTDRLGD-------LVNHPRMHFFEGDITINKEWIEYHVKKCDVVL 73 (347)
T ss_pred EEE-EECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-------HCCCCCEEEEECCCCCCHHHHHHHHCCCCEEE
T ss_conf 899-975743899999999998289789999799763677-------55799859997754469999997660598897
No 363
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=49.54 E-value=5.2 Score=20.27 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99779860233-55777776641388632787213322221111000001122222222222333457554467403664
Q gi|254780624|r 70 KDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265)
Q Consensus 70 ~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265)
.+.++|=+|.| +|..+.......+ ..+|+.+--+. +.|++-+.+.+. ...+.++++-.=..+|+|+++-
T Consensus 177 ~~~~vLviGaGem~~l~~~~L~~~g-~~~i~v~nRt~---~ra~~la~~~g~------~~~~~~~l~~~l~~~DvvisaT 246 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTY---ERAEELAKELGG------NAVPLDELLELLNEADVVISAT 246 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCH---HHHHHHHHHCCC------EEECHHHHHHHHHHCCEEEEEC
T ss_conf 1167999868799999999999659-98259976867---899999997498------9972999999997689999927
Q ss_pred EECCC-HHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 20132-134432012100048521177630554455
Q gi|254780624|r 149 GIRNM-PHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 149 ~l~~~-~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
+-.+. ...+.+. ..+++..++|+|++.|.+
T Consensus 247 ~s~~~~~~~~~~~-----~~~~~~~~~iiDLavPRd 277 (311)
T cd05213 247 GAPHYAKIVERAM-----KKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred CCCCCHHHHHHHH-----HHCCCCCEEEEEECCCCC
T ss_conf 9996203599997-----534799769999179998
No 364
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=49.51 E-value=15 Score=17.27 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=38.0
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+..+|=.|.+.| .++..+++ .+++|+.+|.++.-++.+.+.+.+.+ .++.++.+|..+
T Consensus 6 gK~alITGgs~GIG~aia~~la~---~G~~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dl~~ 66 (253)
T PRK12826 6 GRVALVTGAARGIGRAIAVRFAA---DGADVIVVDICGQAAAATAELVAAAG--GKARAYQVDVRD 66 (253)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHC--CCEEEEEEECCC
T ss_conf 98899948977899999999998---79989999898899999999998509--958999951799
No 365
>KOG3851 consensus
Probab=49.32 E-value=19 Score=16.64 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCCCEEEECCHHHHHHH--HHHHHHCCCCCEEEEECCCCC---------------CCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 79977986023355777--776641388632787213322---------------2211110000011222222222223
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVA--FRIAEASDNRSQIVVADINNE---------------MLSVGRDRAFKENLQDCITFIEANA 131 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~--~~l~~~~~~~~~v~giD~s~~---------------Ml~~a~~r~~~~~~~~~i~~~~~da 131 (265)
.+..++|-+|.|+|-++ ..+.++.+. ++|.-+|+++. .|+..+.+.+. -+..+..|++.-+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~-g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~-liP~~a~wi~ekv 114 (446)
T KOG3851 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGS-GSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQAS-LIPKGATWIKEKV 114 (446)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCC-CCEEEECCHHHCCCCCCEEEECCCHHHHHHCCCCCCC-CCCCCCHHHHHHH
T ss_conf 0034899986786305789999865689-8557755215324576517864304446553674111-1567758999888
Q ss_pred CCCCCC----------CCCCCCCEEEEEECCCHHHHHHHCCC
Q ss_conf 334575----------54467403664201321344320121
Q gi|254780624|r 132 ETLPFE----------ANSFDACTLAFGIRNMPHITLVLQEI 163 (265)
Q Consensus 132 ~~lp~~----------d~sfD~V~~sf~l~~~~d~~~~l~e~ 163 (265)
+++.-. .-|+|..+++.|++---+.-+.+.|+
T Consensus 115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Ea 156 (446)
T KOG3851 115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEA 156 (446)
T ss_pred HHCCCCCCEEECCCCCEEEEEEEEEEEECEECCCHHCCHHHH
T ss_conf 750877674770599677665676654024440200375766
No 366
>COG4889 Predicted helicase [General function prediction only]
Probab=49.20 E-value=16 Score=17.15 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=11.1
Q ss_pred CCCEEEECCHHHHHHHHHHH
Q ss_conf 99779860233557777766
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIA 89 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~ 89 (265)
++-+|||-=.|||.+..+++
T Consensus 845 ~~vhilDpFtGTGtFi~RlL 864 (1518)
T COG4889 845 QSVHILDPFTGTGTFIVRLL 864 (1518)
T ss_pred CCEEEECCCCCCCHHHHHHH
T ss_conf 77066347787407899999
No 367
>PRK05866 short chain dehydrogenase; Provisional
Probab=48.97 E-value=20 Score=16.50 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=40.8
Q ss_pred CCCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 9977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 70 KDYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 70 ~~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.+.++|=-|++.| .++..+++ .+++|+.+|.+++.++...+.+.+.+ ..+..+.+|..+
T Consensus 39 ~GKvaLITGassGIG~aiA~~la~---~Ga~Vvl~~R~~~~l~~~~~~i~~~g--~~~~~~~~Dvtd 100 (290)
T PRK05866 39 TGKRILLTGASSGIGEAAAEKFAR---RGATVVAVARRKDLLDAVADRITAAG--GDAMAIPCDLSD 100 (290)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 999899908130999999999998---69989999899999999999999649--908999778898
No 368
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=48.58 E-value=8.7 Score=18.79 Aligned_cols=97 Identities=23% Similarity=0.220 Sum_probs=49.1
Q ss_pred EEECCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCC---CCCCC----CCCCCCCC-----C
Q ss_conf 98602335--57777766413886327872133222211110000011222222---22222----33345755-----4
Q gi|254780624|r 74 VLDVAGGT--GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCIT---FIEAN----AETLPFEA-----N 139 (265)
Q Consensus 74 iLDiGcGT--G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~---~~~~d----a~~lp~~d-----~ 139 (265)
|-=+|+|+ ..++..++.. +.+|+..|++++.++.+++++.+.- ...+. ....+ ...+.+.+ .
T Consensus 2 V~ViGaG~mG~~iA~~~a~~---G~~V~l~D~~~~~l~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 77 (180)
T pfam02737 2 VAVIGAGTMGAGIAQVFARA---GLEVVLVDISEEALEKARARIEKSL-ARLVEKGRLTEEDVDAVLARISFTTDLADAV 77 (180)
T ss_pred EEEECCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHCCCCCCHHHHC
T ss_conf 89999788999999999967---9939999799899999999999989-9999725675676999985241058899975
Q ss_pred CCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 467403664201321344320121000485211776
Q gi|254780624|r 140 SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 140 sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
..|.|.=+ ...++.=+...++++-.+++|+-.+.-
T Consensus 78 ~adlViEa-v~E~l~iK~~l~~~l~~~~~~~~IlaS 112 (180)
T pfam02737 78 DADLVIEA-VPENLDLKRELFAELDAIAPPDAILAS 112 (180)
T ss_pred CCCEEEEC-CCCCHHHHHHHHHHHHHHCHHHEEEEE
T ss_conf 89999992-517688999999999974303308875
No 369
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=48.30 E-value=21 Score=16.34 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHH-HH-HHHHHHHHHCCCCCEEEEECCCC---C----------------CCCCC
Q ss_conf 1799999985206446799779860233-55-77777664138863278721332---2----------------22111
Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGG-TG-DVAFRIAEASDNRSQIVVADINN---E----------------MLSVG 111 (265)
Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcG-TG-~~~~~l~~~~~~~~~v~giD~s~---~----------------Ml~~a 111 (265)
-|.|-..+.+.|. ..+||=+||| .| .++..++.. +- .+++-+|-.. . -.+.+
T Consensus 6 i~~~G~~~q~kl~-----~s~Vli~G~~glg~Ei~Knlvl~-Gv-~~i~i~D~~~v~~~dl~~qf~~~~~dvg~~ra~~~ 78 (286)
T cd01491 6 LYVLGHEAMKKLQ-----KSNVLISGLGGLGVEIAKNLILA-GV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEAS 78 (286)
T ss_pred HHHHHHHHHHHHH-----HCCEEEECCCHHHHHHHHHHHHC-CC-CEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHH
T ss_conf 7762099999997-----59299999876399999999973-99-65999959968867763472257778578889999
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHH
Q ss_conf 1000001122222222222333457554467403664201321344320121000
Q gi|254780624|r 112 RDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRI 166 (265)
Q Consensus 112 ~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~Rv 166 (265)
.+++++.+..-+|+...++.+.--+ ..||+|+++-. ... ...-+.++-|-
T Consensus 79 ~~~l~~lNp~v~v~~~~~~~~~~~~--~~fdvVv~t~~--~~~-~~~~iN~~cR~ 128 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPLTTDEL--LKFQVVVLTDA--SLE-DQLKINEFCHS 128 (286)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHH--CCCCEEEEECC--CHH-HHHHHHHHHHH
T ss_conf 9999964898258963577788885--38888999189--989-99999888877
No 370
>KOG1252 consensus
Probab=46.20 E-value=23 Score=16.14 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=20.8
Q ss_pred EEECCHHHH----HHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 986023355----77777664138863278721332222111
Q gi|254780624|r 74 VLDVAGGTG----DVAFRIAEASDNRSQIVVADINNEMLSVG 111 (265)
Q Consensus 74 iLDiGcGTG----~~~~~l~~~~~~~~~v~giD~s~~Ml~~a 111 (265)
++=.|.||| -+...+.++ ++..+|+++|+.+..+-..
T Consensus 215 i~V~gaGTGGTitgvGRylke~-~~~~kVv~vdp~~S~~~~~ 255 (362)
T KOG1252 215 IFVAGAGTGGTITGVGRYLKEQ-NPNIKVVGVDPQESIVLSG 255 (362)
T ss_pred EEEECCCCCCEEEHHHHHHHHH-CCCCEEEEECCCCCEEECC
T ss_conf 8996268885020066889975-8997799856873302047
No 371
>PRK04940 hypothetical protein; Provisional
Probab=46.06 E-value=23 Score=16.12 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=37.1
Q ss_pred CCEECCHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHH-HHHHH
Q ss_conf 521279899999999999-8---------763421157667614801799999985206446799779860233-55777
Q gi|254780624|r 17 GFREVPEEEKQNMVNHVF-S---------RVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGG-TGDVA 85 (265)
Q Consensus 17 Gf~~v~~~~k~~~v~~~F-~---------~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcG-TG~~~ 85 (265)
||.+-.+.+|.+..+.-| + .+.+++|.-. + -+.+-+.++. ..++..+| +|+| .|..|
T Consensus 7 GF~Sss~~~k~k~~q~~fi~~dvr~i~~~t~~P~~d~~~-l---------l~ev~k~i~~-~~d~~~li-iGssLGGyyA 74 (179)
T PRK04940 7 GFDSTSPGNHEKVLQLQFIDPDVRLISYSTLHPKHDMQH-L---------LKEVDKMLQL-SDDERPLI-CGVGLGGYWA 74 (179)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH-H---------HHHHHHHHHH-CCCCCCEE-EECCCHHHHH
T ss_conf 467889632999999972575655466788993120999-9---------9999999983-58788379-9547238999
Q ss_pred HHHHHHCCCCCEEEEECCC
Q ss_conf 7766413886327872133
Q gi|254780624|r 86 FRIAEASDNRSQIVVADIN 104 (265)
Q Consensus 86 ~~l~~~~~~~~~v~giD~s 104 (265)
..++.+++ .+.+.+.++
T Consensus 75 ~~l~~~~~--~KaVliNPa 91 (179)
T PRK04940 75 ERIGFLCG--IRQVIFNPN 91 (179)
T ss_pred HHHHHHCC--CCEEEECCC
T ss_conf 99999829--867998899
No 372
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=46.05 E-value=20 Score=16.43 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=3.9
Q ss_pred EEEEECCCCC
Q ss_conf 2787213322
Q gi|254780624|r 97 QIVVADINNE 106 (265)
Q Consensus 97 ~v~giD~s~~ 106 (265)
+|+|+|+.++
T Consensus 25 ~V~g~D~d~~ 34 (411)
T TIGR03026 25 EVTGVDIDQE 34 (411)
T ss_pred CEEEEECCHH
T ss_conf 4899989999
No 373
>PRK05650 short chain dehydrogenase; Provisional
Probab=45.81 E-value=17 Score=16.98 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=10.0
Q ss_pred CEEEEECCCCCCCCCCCCCHHC
Q ss_conf 3278721332222111100000
Q gi|254780624|r 96 SQIVVADINNEMLSVGRDRAFK 117 (265)
Q Consensus 96 ~~v~giD~s~~Ml~~a~~r~~~ 117 (265)
++|+.+|.+++-++...+.+..
T Consensus 25 ~~V~l~~r~~~~l~~~~~~l~~ 46 (270)
T PRK05650 25 WRLALADVNEEGGEETLKELRE 46 (270)
T ss_pred CEEEEEECCHHHHHHHHHHHHH
T ss_conf 9899997988999999999984
No 374
>PRK07109 short chain dehydrogenase; Provisional
Probab=45.42 E-value=23 Score=16.14 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=38.7
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 799779860233557777766413-88632787213322221111000001122222222222333
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEAS-DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~-~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
-++..||=-||..| +-..+++.+ ..+++|+.++.+++-|+...+.+...+. ++..+.+|..+
T Consensus 6 l~~KvVvITGASsG-IGra~A~~fA~~Ga~Vvl~aR~~~~L~~~a~e~~~~G~--~~~~~~~DVsd 68 (338)
T PRK07109 6 LGRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEGLAAEIRAAGG--EALAVVADVAD 68 (338)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEEEECCC
T ss_conf 69898999484349-99999999998799899998999999999999996398--18999801799
No 375
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=44.27 E-value=24 Score=15.95 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=5.7
Q ss_pred CEEEEECCCCCC
Q ss_conf 327872133222
Q gi|254780624|r 96 SQIVVADINNEM 107 (265)
Q Consensus 96 ~~v~giD~s~~M 107 (265)
.+|-|.|+++..
T Consensus 24 ~~VsGSD~~~~~ 35 (491)
T TIGR01082 24 YKVSGSDIAENA 35 (491)
T ss_pred CCEEEEECCCCC
T ss_conf 908772033563
No 376
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=43.96 E-value=24 Score=15.92 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=39.1
Q ss_pred EEEECCHHHHH----HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC-CCCC--CCCCCCCCCE
Q ss_conf 79860233557----777766413886327872133222211110000011222222222223-3345--7554467403
Q gi|254780624|r 73 RVLDVAGGTGD----VAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA-ETLP--FEANSFDACT 145 (265)
Q Consensus 73 ~iLDiGcGTG~----~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da-~~lp--~~d~sfD~V~ 145 (265)
..+=.|+|||- ++..|.++. +..+++++|+....+-..-+ + ... ++|=. .-+| +...-+|-|.
T Consensus 171 d~fVagvGTGGTitGvar~Lk~~~-p~i~iv~vdP~~S~~~~~G~-----g-~~~---i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 171 DAFVAGVGTGGTITGVARYLKERN-PNVRIVAVDPEGSVLLSGGE-----G-PHK---IEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCC-----C-CCC---CCCCCCCCCCCCCCCCCCCEEE
T ss_conf 989993785265899999998628-98379997778885557998-----8-862---7777988677324643360599
Q ss_pred EEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 66420132134432012100048521177
Q gi|254780624|r 146 LAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 146 ~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
.++| +.++..++|+.+.-|.++
T Consensus 241 ------~V~d-~~A~~~~r~La~~eGi~v 262 (300)
T COG0031 241 ------RVSD-EEAIATARRLAREEGLLV 262 (300)
T ss_pred ------EECH-HHHHHHHHHHHHHHCEEE
T ss_conf ------9787-999999999999839121
No 377
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=43.67 E-value=25 Score=15.89 Aligned_cols=100 Identities=22% Similarity=0.167 Sum_probs=42.0
Q ss_pred CCCEEEECCHHHH--HHHHHHHHHCCCC---CEEEEECCCCCCC--------CCCCCCHHCCCCCCCCCCCCC------C
Q ss_conf 9977986023355--7777766413886---3278721332222--------111100000112222222222------2
Q gi|254780624|r 70 KDYRVLDVAGGTG--DVAFRIAEASDNR---SQIVVADINNEML--------SVGRDRAFKENLQDCITFIEA------N 130 (265)
Q Consensus 70 ~~~~iLDiGcGTG--~~~~~l~~~~~~~---~~v~giD~s~~Ml--------~~a~~r~~~~~~~~~i~~~~~------d 130 (265)
...++.=+|||.. +++..++++++.. ..++ +..++.++ +.+++.+.+.+ |+++.+ +
T Consensus 144 ~~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~-i~~~~~~l~~~~~~~~~~~~~~l~~~g----I~v~~~~~v~~v~ 218 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVT-LIAGASLLPGFPAKVRRLVLRLLARRG----IEVHEGAPVTRGP 218 (364)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCCCCCHHCCHHHHHHHHHHHHHCC----CEEEECCEEEEEC
T ss_conf 99645897858179999999999987468742799-835775101259999999999999779----5698375368977
Q ss_pred CCCCCCCCC---CCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 333457554---467403664201321344320121000485211776305
Q gi|254780624|r 131 AETLPFEAN---SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 131 a~~lp~~d~---sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
.+.+-+.+. .+|.+..+-+++ + ...+++.-=-+-+.|++.+-++
T Consensus 219 ~~~v~l~~g~~i~~d~vi~~~G~~--p--~~~~~~~~l~~d~~G~I~Vd~~ 265 (364)
T TIGR03169 219 DGALILADGRTLPADAILWATGAR--A--PPWLAESGLPLDEDGFLRVDPT 265 (364)
T ss_pred CCCEEECCCCEEEEEEEEECCCCC--C--CHHHHHCCCCCCCCCCEEECCC
T ss_conf 995183799789630899888877--8--8657744663078997887887
No 378
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=43.05 E-value=24 Score=15.92 Aligned_cols=35 Identities=9% Similarity=-0.092 Sum_probs=14.3
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEE
Q ss_conf 100000112222222222233345--755446740366
Q gi|254780624|r 112 RDRAFKENLQDCITFIEANAETLP--FEANSFDACTLA 147 (265)
Q Consensus 112 ~~r~~~~~~~~~i~~~~~da~~lp--~~d~sfD~V~~s 147 (265)
++++.+.+..-+|+...++.++.+ |- .+||+|+.+
T Consensus 59 ~~~i~~~np~v~v~~~~~~i~~~~~~f~-~~fdvVi~~ 95 (291)
T cd01488 59 AKFVNDRVPGVNVTPHFGKIQDKDEEFY-RQFNIIICG 95 (291)
T ss_pred HHHHHHHCCCCEEEEEECCHHHCCHHHH-HHCCEEEEC
T ss_conf 9999987899789985053100789899-519999988
No 379
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.86 E-value=23 Score=16.04 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=57.1
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC----------CC
Q ss_conf 977986023355---77777664138863278721332222111100000112222222222233345----------75
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP----------FE 137 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp----------~~ 137 (265)
+.++|=.|++.| .++..+++ .+++|+.+|.+++-++..++.+.+. .++.++.+|..+.. -.
T Consensus 5 gK~~lVTGas~GIG~aiA~~la~---~Ga~V~i~~r~~~~l~~~~~~l~~~---g~~~~~~~Dvs~~~~v~~~~~~~~~~ 78 (238)
T PRK05786 5 GKNVLIVGVSPGLGYAVAYFALR---EGASVYAFARSEEKLKEIKKTLAKY---GNVIYVVGDVSKLEGAREAAEKAAKV 78 (238)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 98899928987899999999998---7999999969889999999987435---97799975789999999999999998
Q ss_pred CCCCCCCEEEEE------ECCCHHHH-----------HHHCCCCHHCCCCCEEEEE
Q ss_conf 544674036642------01321344-----------3201210004852117763
Q gi|254780624|r 138 ANSFDACTLAFG------IRNMPHIT-----------LVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 138 d~sfD~V~~sf~------l~~~~d~~-----------~~l~e~~RvLKpGG~~~i~ 176 (265)
-...|.++..-+ +..+.+++ .+.+.+.+.+++||.+++.
T Consensus 79 ~g~iD~lv~naG~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~g~~ii~i 134 (238)
T PRK05786 79 FGALHGLVVTAGGYIEDTVEELAGLEDMLNNHLKAPLYAVNASLPLLREGSSIVLV 134 (238)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 39988799805756788523189999999998589999999999974216779999
No 380
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.41 E-value=17 Score=16.88 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+.++|=-|++.| .++..+++ .+++|+.+|.+++-++.+.+.+.+.+ .++.++.+|..+
T Consensus 12 gKvalVTG~s~GIG~aia~~la~---~Ga~V~i~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~ 72 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGE---AGARVVLSARKAEELEEAAAHLEALG--IDALWLAADVAD 72 (259)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 99899948776899999999998---69999999798899999999999549--958999826899
No 381
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=42.28 E-value=12 Score=17.79 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCCE
Q ss_conf 98999999997599537999855664
Q gi|254780624|r 224 NQQDFAAVISAAGFSNVSFTNYTNGV 249 (265)
Q Consensus 224 ~~~el~~~l~~aGF~~v~~~~~~~Gi 249 (265)
+.+++...|++.||.- .+..||+
T Consensus 339 ~i~~Il~~l~~~G~sa---~Ni~FG~ 361 (407)
T cd01569 339 RIEEILERLKAKGFAS---ENIVFGM 361 (407)
T ss_pred HHHHHHHHHHHCCCCH---HHEEEEC
T ss_conf 9999999999779831---4226741
No 382
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.15 E-value=26 Score=15.74 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=3.6
Q ss_pred EECCCCCCCC
Q ss_conf 7213322221
Q gi|254780624|r 100 VADINNEMLS 109 (265)
Q Consensus 100 giD~s~~Ml~ 109 (265)
-+++|.-+|+
T Consensus 179 VlElSSfQLe 188 (501)
T PRK02006 179 VLELSSFQLE 188 (501)
T ss_pred EEEECHHHHC
T ss_conf 9996646757
No 383
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=41.45 E-value=27 Score=15.67 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=20.8
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCC
Q ss_conf 9999999975995379998556649999998116454
Q gi|254780624|r 226 QDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCENIG 262 (265)
Q Consensus 226 ~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~~ 262 (265)
--...-|+++||+ |+.+.=.++==-+..|+|+++..
T Consensus 211 ~~vRr~L~~aGF~-v~~r~g~grKRem~~a~~~~~~~ 246 (252)
T COG4121 211 IAVRRRLEQAGFT-VEKRTGRGKKRELLRGVKIQPSP 246 (252)
T ss_pred HHHHHHHHHCCCE-EEECCCCCCCCCCHHHHCCCCCC
T ss_conf 9999789971764-56447766211001532168998
No 384
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.39 E-value=26 Score=15.70 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=37.1
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+..+|=-|++.| .++..+++. +++|+.+|.+++-++...+.+.+.+ .++.++.+|..+
T Consensus 6 gKvalITGas~GIG~aiA~~la~~---Ga~V~l~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dvtd 66 (238)
T PRK07666 6 GKNALITGAGRGIGRAVAIALAKE---GVNVGLLARSEENLKAVAKEVEAEG--VKAVIATADVSD 66 (238)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEEEECCC
T ss_conf 998999163778999999999987---9989999899999999999999559--927999930799
No 385
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=41.24 E-value=24 Score=15.99 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=28.3
Q ss_pred EEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 7986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 73 RVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 73 ~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.+|=.|++.| .++..+++ .+++|+.+|.+++-++...+.+.......++..+++|..+
T Consensus 4 valITG~s~GIG~aia~~la~---~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~ 64 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAE---EGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred EEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 899946886899999999998---7999999979889999999999862488608999832799
No 386
>pfam04587 ADP_PFK_GK ADP-specific Phosphofructokinase/Glucokinase conserved region. In archaea a novel type of glycolytic pathway exists that is deviant from the classical Embden-Meyerhof pathway. This pathway utilizes two novel proteins: an ADP-dependent Glucokinase and an ADP-dependent Phosphofructokinase. This conserved region is present at the C-terminal of both these proteins. Interestingly this family contains sequences from higher eukaryotes..
Probab=40.63 E-value=27 Score=15.59 Aligned_cols=106 Identities=19% Similarity=0.291 Sum_probs=51.9
Q ss_pred CCCCCEEEEEECCCH-------H---HHHHHCCCCHHCC-CCCEEEEEECCCCCC-CHHHHHHHHHHHCHHHHHHHHHCC
Q ss_conf 467403664201321-------3---4432012100048-521177630554455-101123456531113321025428
Q gi|254780624|r 140 SFDACTLAFGIRNMP-------H---ITLVLQEIYRILK-CGGRLLVLEFSEVQG-PVFKKIYDMWSFKVIPQLGRFIAG 207 (265)
Q Consensus 140 sfD~V~~sf~l~~~~-------d---~~~~l~e~~RvLK-pGG~~~i~df~~p~~-~~~~~~~~~y~~~iiP~~g~~~~~ 207 (265)
.-|+++.| |++.+. + +-+-++|..+.|| |-+.-+-+||....+ .+.+.+. .+++|.+-.+..+
T Consensus 209 ~~Dl~vlS-Glq~l~~~~~d~~~~~~~l~~~~e~l~~lk~~~~i~iH~E~AS~~d~~l~~~i~----~~ilp~vDSlGmN 283 (444)
T pfam04587 209 QVDLAILS-GLQMLTLFYSDGKDAEYYLKRVKEDIKLLKKPKGIKVHLEFASIQDRELRKEIV----HNVLPMVDSVGMN 283 (444)
T ss_pred CCCEEEEE-CHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH----HHHCCCCCCCCCC
T ss_conf 88889996-234320347786348999999999999823688986699963426099999999----9714205637779
Q ss_pred CHHH--------HHHHHHHHHHCCC------HHHHHHHHHHCCCCEEEEEECCCCEE
Q ss_conf 8768--------6578999996899------89999999975995379998556649
Q gi|254780624|r 208 DEEP--------YQYLIESIRRFPN------QQDFAAVISAAGFSNVSFTNYTNGVV 250 (265)
Q Consensus 208 ~~~~--------Y~yL~~Si~~f~~------~~el~~~l~~aGF~~v~~~~~~~Gi~ 250 (265)
..+. |..+.+.+...+. .+.+..++++.|++.|+++++.+=++
T Consensus 284 EqELa~l~~~lg~~~ls~~~~~~~~~~~~~v~~~~~~L~~~~~l~RIhvHTl~y~~~ 340 (444)
T pfam04587 284 EQELANLLSVLGYDELADRILSYNRADDVAVLGGLIKLDEETGLERIHVHTIYYYLA 340 (444)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHEEEE
T ss_conf 899999998627985332224679867799999999999873998899971011789
No 387
>KOG1201 consensus
Probab=40.52 E-value=28 Score=15.58 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 9977986023355---777776641388632787213322221111000001122222222222
Q gi|254780624|r 70 KDYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEAN 130 (265)
Q Consensus 70 ~~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d 130 (265)
.+..+|=-|.|.| .++.+++++. ++++..|+.+.-.+...+.+.+.| .++...+|
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cd 94 (300)
T KOG1201 37 SGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNEETVKEIRKIG---EAKAYTCD 94 (300)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHC---CEEEEEECCCCCHHHHHHHHHHCC---CEEEEEEC
T ss_conf 69889996898607899999999707---848999556512399999998448---52589955
No 388
>PRK06194 hypothetical protein; Provisional
Probab=40.49 E-value=26 Score=15.69 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=36.7
Q ss_pred CEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 779860233557777766413-88632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEAS-DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~-~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
..+|=-|++.| +-..+++.+ ..+++|+.+|.+++.|+.+.+.+...+ .++..+.+|..+
T Consensus 7 KvavITGassG-IG~a~A~~la~~Ga~Vvl~d~~~~~l~~~~~~l~~~g--~~v~~~~~DVsd 66 (301)
T PRK06194 7 KVAVITGAASG-FGREFARIGARLGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSD 66 (301)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 98999273779-9999999999879989999798899999999998459--849999656899
No 389
>PRK08862 short chain dehydrogenase; Provisional
Probab=40.32 E-value=28 Score=15.57 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=34.1
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 977986023355---7777766413886327872133222211110000011222222222223
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA 131 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da 131 (265)
+..+|=-|+|.| .++..+++ .+++|+.+|.+++-++...+.+.+.+ .++.....|.
T Consensus 5 ~Kv~lITGas~GIG~aiA~~~A~---~Ga~Vii~~r~~~~l~~~~~~i~~~g--~~~~~~~~d~ 63 (227)
T PRK08862 5 NSIILITSAGSVLGRTISCHFAR---LGATLILCDQDQSALNDTYEQCSALT--DNVYSYQLKD 63 (227)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEEECC
T ss_conf 99999979887999999999998---79999999699999999999999758--9748999516
No 390
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=39.74 E-value=19 Score=16.56 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=44.0
Q ss_pred EEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHH-----------HHHHCCCCHHC
Q ss_conf 8721332222111100000112222222222233345755446740366420132134-----------43201210004
Q gi|254780624|r 99 VVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHI-----------TLVLQEIYRIL 167 (265)
Q Consensus 99 ~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~-----------~~~l~e~~RvL 167 (265)
+.-+++++|+=+|-.|. ..|-..-||. -.-+++ |-|+-+|+.|+ .+.++||...|
T Consensus 46 ~~p~laen~iyVAGdRV------------~tDPL~kPFS-mGrNLl-CvySKKhm~d~Pelk~~K~~~N~~slk~m~~lL 111 (235)
T cd07985 46 THPYLAENMIYVAGDRV------------VSDPLCKPFS-MGRNLL-CVHSKKHIDDPPELKEEKMKANLATLKEMQQLL 111 (235)
T ss_pred CCHHHHHHEEEECCCEE------------ECCCCCCCCC-CCCCEE-EEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26534652189617766------------2485657643-677669-985421058987788999998699999999998
Q ss_pred CCCCEEEEEECC
Q ss_conf 852117763055
Q gi|254780624|r 168 KCGGRLLVLEFS 179 (265)
Q Consensus 168 KpGG~~~i~df~ 179 (265)
+.||.++-+-.|
T Consensus 112 ~~Gg~~iwvAPS 123 (235)
T cd07985 112 NEGGQLIWVAPS 123 (235)
T ss_pred HCCCEEEEECCC
T ss_conf 468759998788
No 391
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=39.71 E-value=23 Score=16.03 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=32.0
Q ss_pred EEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 7986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 73 RVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 73 ~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+||=.|++.| .++..+++ .+++|+.+|.+++-++.+.+.+.+.+ .+.++.+|..+
T Consensus 2 nVlITGas~GIG~aiA~~la~---~Ga~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~Dv~~ 59 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLK---KGARVVISSRNEENLEKALKELKELG---EVYAIKADLSD 59 (259)
T ss_pred EEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC---CEEEEEEECCC
T ss_conf 899975877899999999998---79999999799899999999987418---87999963699
No 392
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.41 E-value=25 Score=15.80 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=61.5
Q ss_pred CCCCEEEECCH-HHH------HHHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 79977986023-355------777776641388632787213-32222111100000112222222222233345-----
Q gi|254780624|r 69 SKDYRVLDVAG-GTG------DVAFRIAEASDNRSQIVVADI-NNEMLSVGRDRAFKENLQDCITFIEANAETLP----- 135 (265)
Q Consensus 69 ~~~~~iLDiGc-GTG------~~~~~l~~~~~~~~~v~giD~-s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp----- 135 (265)
.++..||=+|- |.| -++.++.+ .+...-++++|. -+..+++.+.-..+ -+|.|...+.+.-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q----~~v~~f~~~~~~~Pv~Iak 172 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQ----VGVPFFGSGTEKDPVEIAK 172 (451)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH----CCCCEECCCCCCCHHHHHH
T ss_conf 99858999815679748689999999997-499458985056786899999999986----0985316778899799999
Q ss_pred -----CCCCCCCCCEEEEEEC-CCH-HHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf -----7554467403664201-321-34432012100048521177630554
Q gi|254780624|r 136 -----FEANSFDACTLAFGIR-NMP-HITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 136 -----~~d~sfD~V~~sf~l~-~~~-d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
+.++.||+|.+--+=| ++. +.-.-++++.++++|.-.++++|-..
T Consensus 173 ~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~ 224 (451)
T COG0541 173 AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI 224 (451)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 9999999749988999688733030999999999985539874899876444
No 393
>TIGR02885 spore_sigF RNA polymerase sigma-F factor; InterPro: IPR014236 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . Members of this entry represent RNA polymerase sigma factor F. Within the Firmicutes, Sigma-F is specifically, and universally, a component of the endospore formation program, and is expressed in the forespore to turn on the expression of dozens of genes. It is closely related to sigma-G, which is also expressed in the forespore.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=39.28 E-value=29 Score=15.46 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 54467403664201321344320121000485211776
Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
|.+||+=+|+|+. +-.+.||.|-|+.+|.+=+
T Consensus 57 D~~y~VKFSTYAV------PmI~GEIkRFLRDDG~ikV 88 (231)
T TIGR02885 57 DLSYDVKFSTYAV------PMIMGEIKRFLRDDGIIKV 88 (231)
T ss_pred CCCCCEEEEECCC------CHHHHHHHHHHCCCCCEEE
T ss_conf 7677701552122------2022122231026885575
No 394
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=39.12 E-value=29 Score=15.44 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 5789999968998999999997599537999855664999999811645
Q gi|254780624|r 213 QYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCENI 261 (265)
Q Consensus 213 ~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~ 261 (265)
.||...-+. ...++..||+++||..|+ .+=.++++..+.|.-|+.+
T Consensus 206 ~ylt~~h~~--~~~~~~~wMr~aG~deV~-iDavGNl~GR~eG~~P~ap 251 (590)
T PRK13590 206 TYLTDAHRA--CAQQLSHWMRDCGFDEVH-IDAVGNVVGRYHGSDPSAR 251 (590)
T ss_pred EECCHHHHH--HHHHHHHHHHHCCCCEEE-ECCCCCEEEEECCCCCCCC
T ss_conf 964889999--999999999980997698-8777657887048999998
No 395
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.06 E-value=26 Score=15.76 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=45.3
Q ss_pred EEEECCHHH-H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCC---CCCCC----CCCCCCCC-----
Q ss_conf 798602335-5-7777766413886327872133222211110000011222222---22222----33345755-----
Q gi|254780624|r 73 RVLDVAGGT-G-DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCIT---FIEAN----AETLPFEA----- 138 (265)
Q Consensus 73 ~iLDiGcGT-G-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~---~~~~d----a~~lp~~d----- 138 (265)
+|-=||+|+ | .++..++.. +.+|+..|++++.++.+++++.+.- ...+. +...+ ...+...+
T Consensus 6 ~VaViGAG~MG~giA~~~a~~---G~~V~l~D~~~e~~~~~~~~i~~~l-~~~~~~~~l~~~~~~~~l~~i~~~~~~~~~ 81 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA---GYDVLLNDVSADRLESGMATINGNL-ARQVAKGKISEEARAAALARITTATTLDDL 81 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 899989669999999999967---9968999798899999999999999-999970688889999998407776898896
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 446740366420132134432012100048521177
Q gi|254780624|r 139 NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
...|.|.=+ ...++.-+.+.++++-.+++|+-.+.
T Consensus 82 ~~aDlViEa-v~E~l~iK~~lf~~l~~~~~~~~Ila 116 (292)
T PRK07530 82 ADCDLVIEA-ATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred CCCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 649999988-84745878989999986269884898
No 396
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.98 E-value=29 Score=15.43 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=10.3
Q ss_pred CEEEEECCCCCCCCCCC
Q ss_conf 32787213322221111
Q gi|254780624|r 96 SQIVVADINNEMLSVGR 112 (265)
Q Consensus 96 ~~v~giD~s~~Ml~~a~ 112 (265)
..+..+++|+-+|+...
T Consensus 171 ~d~~V~ElSSfqL~~~~ 187 (481)
T PRK01438 171 YDVLAVELSSFQLHWAP 187 (481)
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 60899980476513344
No 397
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=38.54 E-value=28 Score=15.50 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=35.4
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
..+|=.|++.| .++..+++ .+++|+.+|.+++-++...+.+...+ .++.+.++|..+
T Consensus 6 Kv~lITGgs~GIG~a~a~~la~---~G~~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dl~~ 65 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAA---DGARVVIYDSNEEAAEALAEELRAAG--GEAALLVFDVTD 65 (246)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEEEECCC
T ss_conf 8899938975899999999998---79999999799999999999999659--948999972899
No 398
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=38.01 E-value=30 Score=15.33 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=15.6
Q ss_pred CCCCCEEEEE-ECCCHHHHHHHCCCCHHCCCC
Q ss_conf 4674036642-013213443201210004852
Q gi|254780624|r 140 SFDACTLAFG-IRNMPHITLVLQEIYRILKCG 170 (265)
Q Consensus 140 sfD~V~~sf~-l~~~~d~~~~l~e~~RvLKpG 170 (265)
.|-+|.+.-| +.++|+....++|+..+|..+
T Consensus 304 nyGviLIPEGLiefIPe~k~LI~ELn~ll~~~ 335 (557)
T PRK07085 304 NFGVILIPEGLIEFIPEMKSLIKELNSLLAEN 335 (557)
T ss_pred CCEEEEECCHHHHHCHHHHHHHHHHHHHHHHC
T ss_conf 86599946238762778999999999999734
No 399
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase; InterPro: IPR011780 This family consists of D-serine ammonia-lyases, pyridoxal-phosphate enzymes that convert D-serine to pyruvate and NH3. These enzyme are also called D-serine dehydratase and D-serine deaminase and was previously designated 4.2.1.14 from EC. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.; GO: 0008721 D-serine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0046416 D-amino acid metabolic process.
Probab=37.59 E-value=22 Score=16.17 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=48.1
Q ss_pred CCCCCCCCCEEECCCEECCHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCCCCCEE---EEC
Q ss_conf 644456785121152127989999999999987--6342115766761480179999998-5206446799779---860
Q gi|254780624|r 4 DRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSR--VSHRYDVMNDLMSLGLHRFWKEAMV-TNLNPRKSKDYRV---LDV 77 (265)
Q Consensus 4 ~~~~~~~~~~~~fGf~~v~~~~k~~~v~~~F~~--iA~~YD~~N~~~S~G~~r~Wr~~~i-~~l~~~~~~~~~i---LDi 77 (265)
-|+.++.|+.++| |+-| +. +++|=. ||. .+.|.++- ..+.+....+.-| .=|
T Consensus 215 GR~~a~~DP~~yF----vDDE-~S---r~LFLGY~VAa--------------~Rlk~Qld~~gi~~~~e~PLfVYlPCGV 272 (431)
T TIGR02035 215 GRKEAEADPFCYF----VDDE-NS---RNLFLGYAVAA--------------SRLKKQLDKKGIKVDKEHPLFVYLPCGV 272 (431)
T ss_pred HHHHHCCCCCEEE----ECCH-HH---HHHHHHHHHHH--------------HHHHHHHHHCCCEECCCCCEEEECCCCC
T ss_conf 6564407896375----0352-11---11445688999--------------9999999865871068987278727777
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECC--CCCCCC
Q ss_conf 23355777776641388632787213--322221
Q gi|254780624|r 78 AGGTGDVAFRIAEASDNRSQIVVADI--NNEMLS 109 (265)
Q Consensus 78 GcGTG~~~~~l~~~~~~~~~v~giD~--s~~Ml~ 109 (265)
|.|+|-+++-|...+++..+|.=+++ ||-||=
T Consensus 273 GGgPGGVAfGLKl~fgd~Vh~fFaEPthsPCMLL 306 (431)
T TIGR02035 273 GGGPGGVAFGLKLAFGDDVHVFFAEPTHSPCMLL 306 (431)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 8986178888888743854899736753404675
No 400
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=37.12 E-value=9.8 Score=18.46 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=68.3
Q ss_pred CEEEECCHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCC----CCCCCCC
Q ss_conf 7798602335577777664138--8632787213322221111000001122222222222333-4575----5446740
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASD--NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFE----ANSFDAC 144 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~--~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~----d~sfD~V 144 (265)
..|+|.=+|||.-+++.+.-.+ ...+++.=|++|..++.-++++.... -.|++....||-. |-.. .+.||+|
T Consensus 96 i~~~dALSasGiRaiRya~E~~fngv~~v~~ND~~P~Ave~I~~N~~~N~-v~N~~v~n~Da~~~L~~~nkat~~~F~vi 174 (462)
T TIGR00308 96 IEIADALSASGIRAIRYALEVEFNGVKKVFANDINPKAVESIKNNVKLNS-VENIEVINEDAAAVLRKRNKATFRKFEVI 174 (462)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHCHHHCCCCCEE
T ss_conf 89998751040889999874465761067753477378899884123244-22765455037999875121123676437
Q ss_pred EE-EEEECCCHHHHHHHCCCCHHCCCC-CEEEE
Q ss_conf 36-642013213443201210004852-11776
Q gi|254780624|r 145 TL-AFGIRNMPHITLVLQEIYRILKCG-GRLLV 175 (265)
Q Consensus 145 ~~-sf~l~~~~d~~~~l~e~~RvLKpG-G~~~i 175 (265)
=+ -|| .+--.+..+.|.+..+ |.+.+
T Consensus 175 DiDPFG-----spAPFvd~A~~~~~~~NglL~v 202 (462)
T TIGR00308 175 DIDPFG-----SPAPFVDSAIRASAKRNGLLLV 202 (462)
T ss_pred EECCCC-----CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 647877-----9741589999999746860440
No 401
>PRK06181 short chain dehydrogenase; Provisional
Probab=36.47 E-value=32 Score=15.18 Aligned_cols=16 Identities=0% Similarity=-0.110 Sum_probs=6.6
Q ss_pred HHHHHHCCCCHHCCCC
Q ss_conf 3443201210004852
Q gi|254780624|r 155 HITLVLQEIYRILKCG 170 (265)
Q Consensus 155 d~~~~l~e~~RvLKpG 170 (265)
+++.+.+.+.+.+..+
T Consensus 211 ~pe~vA~~i~~ai~~~ 226 (263)
T PRK06181 211 SAEECAEMMLPAIARR 226 (263)
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 9999999999999669
No 402
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=36.45 E-value=32 Score=15.17 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=26.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECC
Q ss_conf 99999999759953799985566499999981164
Q gi|254780624|r 226 QDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCEN 260 (265)
Q Consensus 226 ~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~ 260 (265)
+-+..-|.+||+..|+...-..++--+..+.||+-
T Consensus 17 eyl~k~l~~Ag~s~ieIeRtp~~~~I~I~t~rPG~ 51 (85)
T cd02411 17 EYLEKELERAGYGGMEILRTPLGTQITIYAERPGM 51 (85)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCE
T ss_conf 99999888678655999988996699999789984
No 403
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=36.43 E-value=32 Score=15.17 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHCCCCEEE
Q ss_conf 9989999999975995379
Q gi|254780624|r 223 PNQQDFAAVISAAGFSNVS 241 (265)
Q Consensus 223 ~~~~el~~~l~~aGF~~v~ 241 (265)
+.--+..+.|++-||...+
T Consensus 242 ~g~~~~i~~L~~lGll~~~ 260 (389)
T COG1748 242 PGHLEVIKALRDLGLLSRE 260 (389)
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 4099999999875788655
No 404
>PRK07328 histidinol-phosphatase; Provisional
Probab=36.36 E-value=26 Score=15.78 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=40.8
Q ss_pred EEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC-------CHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 420132134432012100048521177630554455-------1011234565311133210254288768657899999
Q gi|254780624|r 148 FGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG-------PVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIR 220 (265)
Q Consensus 148 f~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~-------~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~ 220 (265)
|+...-.+....+.++.+.++..|..+ |+++... .+-..+...+...=+|. .++.|.+. ++.|.
T Consensus 166 ~~~~~~~~~~~~~~~il~~~~~~g~~l--EiNt~glr~~~~e~yP~~~il~~~~~~G~~i---t~gSDAH~----~~~vg 236 (268)
T PRK07328 166 FGHRPTGDLTELYEPALDVIARAGLCL--DVNTAGLRKPAAEVYPAPALLRAARERGIPV---VLGSDAHR----PEEVG 236 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEE--EEECCCCCCCCCCCCCHHHHHHHHHHCCCEE---EEECCCCC----HHHHH
T ss_conf 489985246699999999999729779--9877867788888886299999999879979---99059898----88988
Q ss_pred HCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 6899899999999759953799
Q gi|254780624|r 221 RFPNQQDFAAVISAAGFSNVSF 242 (265)
Q Consensus 221 ~f~~~~el~~~l~~aGF~~v~~ 242 (265)
. .=++..++|+++||+.+.+
T Consensus 237 ~--~f~~a~~~lk~~Gf~~~~~ 256 (268)
T PRK07328 237 F--GFAEAVALLKEAGYREVAY 256 (268)
T ss_pred H--HHHHHHHHHHHCCCCEEEE
T ss_conf 6--8999999999869988999
No 405
>pfam10598 RRM_4 RNA recognition motif of the spliceosomal PrP8. The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molecular rearrangements that occur there, and has recently come under the spotlight for its role in the inherited human disease, Retinitis Pigmentosa. The RNA-recognition motif of PrP8 is highly conserved and provides a possible RNA binding centre for the 5-prime SS, BP, or 3-prime SS of pre-mRNA which are known to contact with Prp8. The most conserved regions of an RRM are defined as the RNP1 and RNP2 sequences. Recognition of RNA targets can also be modulated by a number of other factors, most notably the two loops beta1-alpha1, beta2-beta3 and the amino acid residues C-terminal to the RNP2 domain.
Probab=36.29 E-value=32 Score=15.16 Aligned_cols=51 Identities=27% Similarity=0.539 Sum_probs=36.1
Q ss_pred CCCCCCCCCCEEECCCEECCHHHHHHHHHHH-HHH-HHHHHHHHHHHHHCCCHHH
Q ss_conf 7644456785121152127989999999999-987-6342115766761480179
Q gi|254780624|r 3 KDRFDSDNNMKTSYGFREVPEEEKQNMVNHV-FSR-VSHRYDVMNDLMSLGLHRF 55 (265)
Q Consensus 3 ~~~~~~~~~~~~~fGf~~v~~~~k~~~v~~~-F~~-iA~~YD~~N~~~S~G~~r~ 55 (265)
+|-++++||-..+| +.+.-......+++. |++ |..-|.++-|++.+|+.|.
T Consensus 21 adYitsKNNv~i~y--KDM~h~N~yGlIrGlqFssFi~QyygLv~DlliLGl~Ra 73 (94)
T pfam10598 21 ADYITSKNNVVINY--KDMSHTNSYGLIRGLQFSSFIYQYYGLVVDLLILGLQRA 73 (94)
T ss_pred HHHHHHCCCEEEEE--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99977335458985--144102234246677889999999999999999723778
No 406
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=36.27 E-value=32 Score=15.15 Aligned_cols=97 Identities=10% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCCEEECCCEECCHHHH---------HHHHHHHHHHHHHHHHHHHHH-HH-CCCHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 678512115212798999---------999999998763421157667-61-4801799999985206446799779860
Q gi|254780624|r 9 DNNMKTSYGFREVPEEEK---------QNMVNHVFSRVSHRYDVMNDL-MS-LGLHRFWKEAMVTNLNPRKSKDYRVLDV 77 (265)
Q Consensus 9 ~~~~~~~fGf~~v~~~~k---------~~~v~~~F~~iA~~YD~~N~~-~S-~G~~r~Wr~~~i~~l~~~~~~~~~iLDi 77 (265)
-...+-.||+..+..-.+ .+.+-+||+.|...|+.+-.+ .. .-++... +..+++++.... .+.=+
T Consensus 20 ~~~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~~s~~Eile~llk~i~Idp~f-Kef~e~ike~di---~fiVv 95 (220)
T COG4359 20 NDYITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSSLEEILEFLLKDIKIDPGF-KEFVEWIKEHDI---PFIVV 95 (220)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCC---CEEEE
T ss_conf 67887503852789999988607502899999998763888899999998613568207-999999997599---88999
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 23355777776641388632787213322221
Q gi|254780624|r 78 AGGTGDVAFRIAEASDNRSQIVVADINNEMLS 109 (265)
Q Consensus 78 GcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~ 109 (265)
-+|+--....+.+....+-++.++|++.+-..
T Consensus 96 SsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ 127 (220)
T COG4359 96 SSGMDPFIYPLFEGIVGKERIYCIDIVSNNDY 127 (220)
T ss_pred ECCCCHHHHHHHHHHCCCCCEEEEEEEECCCE
T ss_conf 38975479999986435330455577405726
No 407
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=36.18 E-value=32 Score=15.15 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=36.1
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+.++|=-|.+.| .++..+++ .+++|+..|.+++-++...+.+...+. .+.++++|..+
T Consensus 9 gK~alVTG~~~GIG~aiA~~la~---~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dvtd 69 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAE---YGAEIIINDITAERAEKAVAKLRQEGI--KAHAAAFNVTH 69 (254)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEEECCCCC
T ss_conf 99899968567899999999998---699999996988999999999984498--18999826899
No 408
>pfam07101 DUF1363 Protein of unknown function (DUF1363). This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=36.02 E-value=20 Score=16.47 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=17.9
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 98602335577777664138863278721332
Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINN 105 (265)
Q Consensus 74 iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~ 105 (265)
-+|+|||.|.......+..-+....+-+.+..
T Consensus 6 nidigcg~gnt~~a~frsct~h~s~yy~s~nh 37 (124)
T pfam07101 6 NIDIGCGAGNTMDATFRSCTPHESFYYLSINH 37 (124)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCEEEEEECC
T ss_conf 63334588850455653467663168986345
No 409
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=35.53 E-value=19 Score=16.65 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-----CCC----CCCCCCCE
Q ss_conf 77776641388632787213-3222211110000011222222222223334-----575----54467403
Q gi|254780624|r 84 VAFRIAEASDNRSQIVVADI-NNEMLSVGRDRAFKENLQDCITFIEANAETL-----PFE----ANSFDACT 145 (265)
Q Consensus 84 ~~~~l~~~~~~~~~v~giD~-s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-----p~~----d~sfD~V~ 145 (265)
+...|.+. +.+|+-+|- |..-.+ +-++.++. ..+.+.|++||..+- -|+ ++.+|+|+
T Consensus 15 t~~~Ll~~---G~ev~vlDNLs~G~~~-~l~~~~~~-~G~~~~fv~gDL~D~~~l~~~f~kqql~~~idAVi 81 (341)
T TIGR01179 15 TVRQLLES---GYEVVVLDNLSNGSAE-ALKRGEEI-TGKEVTFVEGDLRDRELLRRVFEKQQLEHKIDAVI 81 (341)
T ss_pred HHHHHHHC---CCEEEEEECCCCCCHH-HHCCCCEE-CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 87887635---9728998157888488-75002341-48532058717515799999987743116754675
No 410
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=35.28 E-value=33 Score=15.05 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=55.3
Q ss_pred CCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 6799779860233-557777766413886327872133222211110000011222222222223334575544674036
Q gi|254780624|r 68 KSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL 146 (265)
Q Consensus 68 ~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~ 146 (265)
.-.++++|=+|.| +|...-..++..+ ++|+..+-+++.++.|. ..|.. .+. ..+|+-.-..+|+|+.
T Consensus 149 ti~gs~~lVlG~Gr~G~~lA~~l~~lG--A~V~V~aR~~~~~a~a~----~~G~~-~v~-----~~~L~~~~~~~D~i~N 216 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALG--AKVKVGARKSAHLARIT----EMGYS-PVH-----LSELAEEVGEADIIFN 216 (296)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HCCCE-EEE-----HHHHHHHHCCCCEEEE
T ss_conf 324765899898689999999999779--96999979999999999----76985-871-----9999977356999998
Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC-CCCCC
Q ss_conf 64201321344320121000485211776305-54455
Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLLVLEF-SEVQG 183 (265)
Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df-~~p~~ 183 (265)
+ +|.+.- -+++..-++|+-.++ |+ |.|-.
T Consensus 217 T-----IPa~Vl-t~~~l~~~~~~avII--DLAS~PGG 246 (296)
T PRK08306 217 T-----IPALVL-TKNVLSKMPPHALII--DLASKPGG 246 (296)
T ss_pred C-----CCHHHC-CHHHHHCCCCCCEEE--EECCCCCC
T ss_conf 9-----852543-999994189996999--94779997
No 411
>PRK05599 hypothetical protein; Provisional
Probab=35.03 E-value=30 Score=15.32 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=23.6
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 79860233557777766413886327872133222211110000011222222222223
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA 131 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da 131 (265)
+||=.|+..| +...+++.+..+.+++.+.-.++-++...+.+...+. ..+.....|+
T Consensus 2 tvlITGASsG-IG~a~A~~lA~G~~vvl~~R~~e~l~~l~~~l~~~g~-~~v~~~~~Dv 58 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLAHGEDVVLAARRPEAAGGLAEDLRQLGA-TSVHVLSFDA 58 (246)
T ss_pred EEEEECCCHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC-CEEEEEECCC
T ss_conf 8999888689-9999999998599499999999999999999986259-7189972899
No 412
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=34.77 E-value=30 Score=15.32 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=49.8
Q ss_pred EEEECCHHH-H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC--CCCCC---CCCCCCC----CCCCCCC---
Q ss_conf 798602335-5-7777766413886327872133222211110000011--22222---2222223----3345755---
Q gi|254780624|r 73 RVLDVAGGT-G-DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN--LQDCI---TFIEANA----ETLPFEA--- 138 (265)
Q Consensus 73 ~iLDiGcGT-G-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~--~~~~i---~~~~~da----~~lp~~d--- 138 (265)
+|-=||+|| | .++..++.. +.+|+.+|++++.++.|++++.+.. +...+ .....++ ..+...+
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~---G~~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 899988768899999999958---99889998998999999999997189999998668999999999983664358888
Q ss_pred --CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf --446740366420132134432012100048521177
Q gi|254780624|r 139 --NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 --~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
...|.|.=+ ...+++=+.+.++++-++++|+-.+.
T Consensus 82 ~~~~aDlViEa-v~E~l~iK~~lf~~l~~~~~~~~Ila 118 (291)
T PRK06035 82 SLSDADFIVEA-VPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HHCCCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 97659999988-83889999999999996589983798
No 413
>KOG3554 consensus
Probab=34.77 E-value=25 Score=15.86 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=57.9
Q ss_pred HHCCC-CCEEEEEE----CCCCCCCHHHHHHHHHHHC-------HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 00485-21177630----5544551011234565311-------133210254288768657899999689989999999
Q gi|254780624|r 165 RILKC-GGRLLVLE----FSEVQGPVFKKIYDMWSFK-------VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVI 232 (265)
Q Consensus 165 RvLKp-GG~~~i~d----f~~p~~~~~~~~~~~y~~~-------iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l 232 (265)
..|-| ||-+++-| .|.++-.++....+-|.+- ++|+ +.+ .+--.|-|+|+...++.....++..-
T Consensus 270 s~LVPlGGPvLCRDemEEWSasEanLFEeALeKyGKDFndIrqdfLPW--KSl-~sIveyYYmwKttdRYvqqKrlKaae 346 (693)
T KOG3554 270 SYLVPLGGPVLCRDEMEEWSASEANLFEEALEKYGKDFNDIRQDFLPW--KSL-TSIVEYYYMWKTTDRYVQQKRLKAAE 346 (693)
T ss_pred HHHHCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 874058985422545654252256789999998555577788762545--778-99999999875103888887653222
Q ss_pred HHCCCCEEEEEECCCCEE--EEEEEEEECCCCC
Q ss_conf 975995379998556649--9999981164543
Q gi|254780624|r 233 SAAGFSNVSFTNYTNGVV--ALHSGWKCENIGS 263 (265)
Q Consensus 233 ~~aGF~~v~~~~~~~Gi~--~i~~g~Kp~~~~~ 263 (265)
.+.-|++|-+-+++-.+. -+..++||+-.|.
T Consensus 347 adsKlkqvYIP~ynKPnpnqI~~~n~k~g~~gt 379 (693)
T KOG3554 347 ADSKLKQVYIPTYNKPNPNQISPYNTKPGMNGT 379 (693)
T ss_pred HHHHHHEEECCCCCCCCCCEECCCCCCCCCCCC
T ss_conf 443200464468899982400335787675665
No 414
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=34.75 E-value=6.9 Score=19.46 Aligned_cols=103 Identities=16% Similarity=0.364 Sum_probs=57.0
Q ss_pred HHHHHHHHHHH-----HHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC----------EE
Q ss_conf 98763421157-----6676148017999999852064467997798602335577777664138863----------27
Q gi|254780624|r 34 FSRVSHRYDVM-----NDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRS----------QI 98 (265)
Q Consensus 34 F~~iA~~YD~~-----N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~----------~v 98 (265)
||.+-+.|-.| -|.+|-. +.| ++|+.|. ..+ =++|++.+-+..|+. ++
T Consensus 222 FDTacK~YSElIGNi~rDA~S~~--KYw--HFIrLMG----RsA---------SHiaLECALqThPN~ciigEEv~~Kk~ 284 (566)
T TIGR02477 222 FDTACKVYSELIGNICRDALSAK--KYW--HFIRLMG----RSA---------SHIALECALQTHPNVCIIGEEVAAKKM 284 (566)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCC--CCE--EEEEECC----CCH---------HHHHHHHHCCCCCCEEEHHHHHHHHCC
T ss_conf 10478899887557888766428--713--6777437----631---------589998732147976751233553258
Q ss_pred EEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCHHHHHHHCCCCHHCCCCCEE
Q ss_conf 872133222211110000011222222222223334575544674036642-013213443201210004852117
Q gi|254780624|r 99 VVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG-IRNMPHITLVLQEIYRILKCGGRL 173 (265)
Q Consensus 99 ~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~-l~~~~d~~~~l~e~~RvLKpGG~~ 173 (265)
+--|+++.|.+.-.+|+ . ....|-+|.+--| +.++|+..+.++|+...|.++-.-
T Consensus 285 tL~~~~~~I~d~i~~Ra----------------~----~G~NfGvvLiPEGLIEFIPEv~~L~~ELn~~L~~~~~~ 340 (566)
T TIGR02477 285 TLSQVTDYIADVIVKRA----------------A----KGKNFGVVLIPEGLIEFIPEVQALIKELNNLLAQNVEE 340 (566)
T ss_pred CHHHHHHHHHHHHHHHH----------------H----CCCCEEEEEECCCCEECCHHHHHHHHHHHHHHHCCCCH
T ss_conf 48899999999999998----------------5----68942799976985420266889999998654047620
No 415
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=34.57 E-value=34 Score=14.98 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 8999999997599537999855664999999811645
Q gi|254780624|r 225 QQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCENI 261 (265)
Q Consensus 225 ~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~ 261 (265)
..++..||+++||..|+ .+=.++++..+-|.-|+-+
T Consensus 217 ~~~~~~wMr~aG~deV~-IDAvGNl~GR~eG~~p~ap 252 (591)
T PRK13799 217 ANQISDWMRDAGFDEVE-IDAVGNVVGRYKAADDDAK 252 (591)
T ss_pred HHHHHHHHHHCCCCEEE-ECCCCCEEEEECCCCCCCC
T ss_conf 99999999980997799-8677546888037999998
No 416
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=34.55 E-value=34 Score=14.98 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=50.1
Q ss_pred EEEECCHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCC---CCCCCC----CCCCCCC-----
Q ss_conf 7986023355--7777766413886327872133222211110000011222222---222223----3345755-----
Q gi|254780624|r 73 RVLDVAGGTG--DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCIT---FIEANA----ETLPFEA----- 138 (265)
Q Consensus 73 ~iLDiGcGTG--~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~---~~~~da----~~lp~~d----- 138 (265)
+|.=+|+||= .++..++.. +.+|+.+|++++.++.+++++...- ...+. ....+. ..+.+..
T Consensus 4 kV~ViGaG~MG~~IA~~~a~~---G~~V~l~D~~~e~l~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a 79 (289)
T PRK09260 4 KIVVVGAGVMGRGIAYVFASS---GFQTTLVDISQEQLASAQQEIESIL-EDGVALGKVTEAAAQAALARLSYSLDLKEA 79 (289)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 699979688789999999968---9988999799899999999999999-999871799989999999558766888998
Q ss_pred -CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf -446740366420132134432012100048521177
Q gi|254780624|r 139 -NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 -~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
...|.|.=+ ...+.+-+.+.++++-++++|+-.+.
T Consensus 80 ~~~aDlViEa-v~E~l~iK~~v~~~l~~~~~~~~Ila 115 (289)
T PRK09260 80 VAGADLLIEA-VPEKLEIKQAVFETADAHAPAEALIA 115 (289)
T ss_pred HCCCCEEEEC-CCCCHHHCHHHHHHHHHCCCCCCEEE
T ss_conf 4769999988-86863236899999860689980898
No 417
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=34.31 E-value=8.4 Score=18.91 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=36.2
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++|=-|.+.| .++..+++ .+++|+.+|.+++-++...+.+.+.+ .++.++.+|..+
T Consensus 11 KvalVTGas~GIG~aia~~la~---~Ga~V~i~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dvtd 70 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELAR---AGAKVAILDRNQEKAEAVVEEIKANG--GEAIALKADVLD 70 (278)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 9899958674899999999998---79989999798899999999998459--909999824899
No 418
>PRK07677 short chain dehydrogenase; Provisional
Probab=34.20 E-value=35 Score=14.94 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=35.5
Q ss_pred EEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 7986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 73 RVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 73 ~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.+|=-|.+.| .++..+++ .+++|+.+|.+++-++.+.+.+.+.+ .++.++++|..+
T Consensus 5 ~alVTGgs~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~ 63 (254)
T PRK07677 5 VVIITGGSSGMGKAMAKRFAE---EGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRN 63 (254)
T ss_pred EEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 899958767899999999998---79999999699999999999998569--909999803899
No 419
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=34.13 E-value=26 Score=15.78 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=35.8
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 798602335577777664138863278721332222111100000112222222222233345
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP 135 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp 135 (265)
-|+|+--|||+..+.+.+..+..+.|+-.-+++--+..+++ ....-...++. +.|=.||+.
T Consensus 4 LiiD~PPGTgD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r-~i~~~~~~~i~-ilGiVENMs 64 (81)
T pfam10609 4 LIIDMPPGTGDEHLTLAQSLPVDGAVIVTTPQDVALLDVRK-AIDMFKKLNVP-ILGIVENMS 64 (81)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH-HHHHHHHCCCC-EEEEEECCC
T ss_conf 99948999678999999748857769980985999999999-99999984996-189997797
No 420
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=34.11 E-value=35 Score=14.93 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCEEEECCHHHHH----HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-C--CCCCCCCC
Q ss_conf 9779860233557----777766413886327872133222211110000011222222222223334-5--75544674
Q gi|254780624|r 71 DYRVLDVAGGTGD----VAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-P--FEANSFDA 143 (265)
Q Consensus 71 ~~~iLDiGcGTG~----~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-p--~~d~sfD~ 143 (265)
..+.+=.|.|||- ++.+|.+.-.+.+.|+|+|+--..|+...+ +.+.+.. --.+.|=.+++ | +.-.-.|.
T Consensus 179 k~~~~VAg~GTGGTItGi~ryLK~~~~~~~~ivGaDP~GSila~pE~-LN~t~~t--~Y~VEGiGyDF~P~vlDR~v~D~ 255 (527)
T TIGR01137 179 KLDMFVAGVGTGGTITGIARYLKDESNPKVRIVGADPEGSILAQPEE-LNKTGRT--PYKVEGIGYDFIPTVLDRKVVDE 255 (527)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCC-CCCCCCC--CEEEEEECCCCCCCCCCCCCCCE
T ss_conf 21178850578831554556543213893389987698533217646-5557898--31487621477685237652544
Q ss_pred CEE-----EEEE-CCC-------------HHHHHHHCCCCH--HCCCCCEEEEE
Q ss_conf 036-----6420-132-------------134432012100--04852117763
Q gi|254780624|r 144 CTL-----AFGI-RNM-------------PHITLVLQEIYR--ILKCGGRLLVL 176 (265)
Q Consensus 144 V~~-----sf~l-~~~-------------~d~~~~l~e~~R--vLKpGG~~~i~ 176 (265)
+.- ||-+ |-+ .-...|++-+.+ -|+.|-+++++
T Consensus 256 w~k~~D~~SF~maRrLi~eEGlLvGGS~GsAvvaal~~A~~hP~l~~~~~~Vvl 309 (527)
T TIGR01137 256 WIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKVAEDHPELKEDQVIVVL 309 (527)
T ss_pred EEEECCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 688088168999999987447264043035899999998726788888789998
No 421
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=33.95 E-value=16 Score=17.17 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99779860233557777766413886--3278721332222111100000112222222222233345755446740366
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNR--SQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA 147 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~--~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265)
.+.+||=+|.| .++...++..... .+|+.+.-+. +.|++-+.+.+ + ...+.++++-.=+.+|+|+++
T Consensus 181 ~~~~vlviGaG--em~~l~~k~L~~~g~~~i~v~nRt~---~ra~~la~~~~----~--~~~~~~~l~~~l~~~Dvvisa 249 (429)
T PRK00045 181 SGKKVLVIGAG--EMGELVAKHLAEKGVRKITVANRTL---ERAEELAEEFG----A--EAIPLEELPEALAEADIVISS 249 (429)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHCC----C--EEECHHHHHHHHHHCCEEEEE
T ss_conf 20659997674--8999999999855998499975867---78999999759----8--897499999999658999994
Q ss_pred EEE-CCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 420-132134432012100048521177630554455
Q gi|254780624|r 148 FGI-RNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 148 f~l-~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
-+- +.+-+.+. ++++.+ -+.+..++++|++.|.+
T Consensus 250 T~s~~~ii~~~~-~~~~~~-~r~~~~~~iiDLavPRd 284 (429)
T PRK00045 250 TAAPHPIITKGM-VERALK-QRRHRPLLLIDLAVPRD 284 (429)
T ss_pred CCCCCCCCCHHH-HHHHHH-HCCCCCEEEEECCCCCC
T ss_conf 489975027999-999987-34699569996168877
No 422
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=33.82 E-value=35 Score=14.90 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=46.3
Q ss_pred EEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 79860233--5577777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 73 RVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 73 ~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
+|-=||+| ...++..|.+. +.+|++.|.+++-.+... +.+ +. ...+..++ -+..|+|.++ |
T Consensus 3 ~Ig~IGlG~MG~~ma~~L~~~---g~~v~v~d~~~~~~~~~~----~~g----~~-~~~s~~e~---~~~~dvIi~~--l 65 (163)
T pfam03446 3 KIGFIGLGVMGSPMALNLLKA---GYTVTVYNRTPEKVEELV----AEG----AV-AAASPAEA---AASADVVITM--V 65 (163)
T ss_pred EEEEEEEHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHH----HCC----CE-ECCCHHHH---HHCCCEEEEE--C
T ss_conf 899983679899999999977---996999979788779999----839----95-53999999---8619999992--5
Q ss_pred CCCHHHHHHHCC---CCHHCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 132134432012---1000485211776305544551011234
Q gi|254780624|r 151 RNMPHITLVLQE---IYRILKCGGRLLVLEFSEVQGPVFKKIY 190 (265)
Q Consensus 151 ~~~~d~~~~l~e---~~RvLKpGG~~~i~df~~p~~~~~~~~~ 190 (265)
.+-+..+.++.+ +...++||-. ++|.++......+.+.
T Consensus 66 ~~~~~v~~V~~~~~gl~~~~~~g~i--iid~sT~~p~~~~~~~ 106 (163)
T pfam03446 66 PAGAAVDAVIFGEDGLLPGLKPGDI--IIDGSTISPDDTRRLA 106 (163)
T ss_pred CCHHHHHEEECCCCCHHHHCCCCCE--EEECCCCCHHHHHHHH
T ss_conf 8714540220263133231358988--9867989999999999
No 423
>PRK08251 short chain dehydrogenase; Provisional
Probab=33.60 E-value=35 Score=14.93 Aligned_cols=59 Identities=7% Similarity=0.097 Sum_probs=29.4
Q ss_pred EEEECCHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 798602335577777664138-863278721332222111100000112222222222233
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASD-NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~-~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265)
+||=.|++.| +...+++.+- .+++|+.++-.++-|+..++.+.+.....++.+...|..
T Consensus 4 ~vlITGAssG-IG~alA~~la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvs 63 (248)
T PRK08251 4 KILITGASSG-LGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVN 63 (248)
T ss_pred EEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 8999478639-99999999998799899998988899999999987379973999978678
No 424
>TIGR00059 L17 ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. Bacterial L17 is a protein of 120 to 130 amino-acid residues while yeast YmL8 is twice as large (238 residues). The N-terminal half of YmL8 is colinear with the sequence of L17 from Escherichia coli.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=33.49 E-value=27 Score=15.66 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987634211
Q gi|254780624|r 25 EKQNMVNHVFSRVSHRYD 42 (265)
Q Consensus 25 ~k~~~v~~~F~~iA~~YD 42 (265)
+-++.+...|+.|||+|-
T Consensus 79 dN~~l~~kLF~~iaPry~ 96 (125)
T TIGR00059 79 DNRQLLNKLFSEIAPRYA 96 (125)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 579999987653055323
No 425
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=33.47 E-value=35 Score=14.87 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=43.3
Q ss_pred CCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 9779860233-557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 71 DYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 71 ~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
+.++|=+|.| .|..........+. .+|+-+.-+. +.|++-+.+.+. ..+. ..+.++++-.-..+|+|.++-+
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~g~-~~i~v~nRt~---~ka~~la~~~~~-~~~~--~~~~~~l~~~l~~~DivI~aT~ 84 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSKGA-KKITIANRTL---EKAKELAEEFGG-EEVE--ALPLDELEELLAEADIVISATS 84 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCH---HHHHHHHHHCCC-CCEE--EEECHHHHHHHHHCCEEEEECC
T ss_conf 8989999960999999999997599-8899954757---899999998499-7258--9851354413631999999259
Q ss_pred ECC-CHHHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 013-2134432012100048521177630554455
Q gi|254780624|r 150 IRN-MPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 150 l~~-~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
-.+ +-..+ .++ +..|| .+|+|++.|.+
T Consensus 85 s~~~ii~~~-~~~---~~~~~---~~iiDLavPrn 112 (134)
T pfam01488 85 APTPIITKE-MVE---EALKG---LLFVDIAVPRD 112 (134)
T ss_pred CCCCEECHH-HHH---HCCCC---EEEEEECCCCC
T ss_conf 997364899-997---44398---59998347888
No 426
>PRK08339 short chain dehydrogenase; Provisional
Probab=33.36 E-value=36 Score=14.86 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=37.4
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
..+|=.|.+.| .++..+++ .+++|+.+|.+++-++.+.+++.+.+ ..++.++.+|..+
T Consensus 9 K~alITG~s~GIG~aiA~~la~---~Ga~V~i~~r~~~~l~~~~~~l~~~~-~~~~~~~~~D~~~ 69 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLAR---AGADVIILSRNEENLKRAKEKIKSES-DVEVHYIVADLTK 69 (263)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCCC
T ss_conf 9899916260999999999998---69999999798899999999998504-9857999848999
No 427
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.94 E-value=36 Score=14.81 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=33.1
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++|=.|.+.| .++..+++ .+++|+.+|.+++-++.+.+.+.+.+ .++.+..+|..+
T Consensus 6 K~~lITGas~GIG~aiA~~la~---~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dv~~ 65 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQ---KGAKLALIDLNQEKLEEAVAQCAALG--GEAEVYAANVTD 65 (253)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 8899948877899999999998---79989999799999999999999659--948999824799
No 428
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; InterPro: IPR014329 Members of this entry are the m6-adenine DNA methyltransferase protein, or a fusion protein that also carries m5 cytosine methyltransferase activity of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A type II restriction endonuclease always accompanies a methyltransferase of this type from Alw26I/Eco31I/Esp3I(IPR014328 from INTERPRO) and by an adenine-specific modification methyltransferase. Members of this are unusual in that the regions of similarity to homologues outside this family are circularly permuted..
Probab=32.72 E-value=18 Score=16.76 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=37.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCC-----------CCEEEEECCCCCCCCCCCCCHHCCC
Q ss_conf 9977986023355777776641388-----------6327872133222211110000011
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDN-----------RSQIVVADINNEMLSVGRDRAFKEN 119 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~-----------~~~v~giD~s~~Ml~~a~~r~~~~~ 119 (265)
+..+|+|=+||+|.+...+.+.... ...|.-.|+++..|..+...+....
T Consensus 33 ~~~~~~DP~~G~G~Li~~~L~~~~~i~~~~~~i~~~~~~~~~~Di~~~~L~~~~~~~~~~~ 93 (603)
T TIGR02987 33 EKLKIIDPCCGDGRLIALLLKKFEEINLFKEQIEKVELNIYLADIDKTLLERASKLLSELA 93 (603)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 1545335752764999999998664303402323311100023144479999999887876
No 429
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=32.54 E-value=9.4 Score=18.59 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=35.0
Q ss_pred EEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 7986023355---7777766413886327872133222211110000011222222222223334
Q gi|254780624|r 73 RVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 73 ~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
.+|=.|.+.| .++..+++ .+++|+.+|.+++.++...+.+...+ .++.++.+|..+.
T Consensus 5 valITG~s~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dv~d~ 64 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAE---EGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDR 64 (250)
T ss_pred EEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEEECCCCH
T ss_conf 999968576899999999998---79999999798899999999999539--9289999448999
No 430
>KOG0780 consensus
Probab=32.09 E-value=37 Score=14.72 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=60.6
Q ss_pred HCCCCCCCCEEEECCH-HHH------HHHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-
Q ss_conf 0644679977986023-355------777776641388632787213-3222211110000011222222222223334-
Q gi|254780624|r 64 LNPRKSKDYRVLDVAG-GTG------DVAFRIAEASDNRSQIVVADI-NNEMLSVGRDRAFKENLQDCITFIEANAETL- 134 (265)
Q Consensus 64 l~~~~~~~~~iLDiGc-GTG------~~~~~l~~~~~~~~~v~giD~-s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l- 134 (265)
+.|..+++..|+=+|- |.| -++.++.++.. ..-++|-|. -....++-+..+.+.+.+--..+...|.-.+
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~-K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia 172 (483)
T KOG0780 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGY-KVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIA 172 (483)
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHH
T ss_conf 6615689708999830578863008999999984687-245776022453068999987674077068403665558999
Q ss_pred -----CCCCCCCCCCEEEEEECCCHHH--HHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf -----5755446740366420132134--432012100048521177630554
Q gi|254780624|r 135 -----PFEANSFDACTLAFGIRNMPHI--TLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 135 -----p~~d~sfD~V~~sf~l~~~~d~--~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
.|..+.||+|.+--+=||-.+. -.-+.++.+.++|.-.+.++|-+.
T Consensus 173 ~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780 173 SEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 99999888639728998278730124899999999985159873899985620
No 431
>PRK07479 consensus
Probab=31.49 E-value=38 Score=14.66 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=31.5
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++|=.|++.| .++..+++ .+++|+.+|.+++-++...+.+...+ .++.++.+|..+
T Consensus 6 K~alITGgs~GIG~a~a~~la~---~G~~V~i~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~ 65 (252)
T PRK07479 6 KVAIVTGAGSGFGEGIAKRFAR---EGAKVVVADLNAAAAERVASEIADAG--GNAIAVAADVSR 65 (252)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 8899938876899999999998---79999999798999999999998539--978999925899
No 432
>TIGR00652 DapF diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity . Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction . Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=31.46 E-value=22 Score=16.21 Aligned_cols=14 Identities=50% Similarity=0.634 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 79899999999999
Q gi|254780624|r 21 VPEEEKQNMVNHVF 34 (265)
Q Consensus 21 v~~~~k~~~v~~~F 34 (265)
+.+++|.+.|+++=
T Consensus 26 ~~~~~kp~~~~~vc 39 (294)
T TIGR00652 26 VKEEEKPEFVRQVC 39 (294)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 16543389999998
No 433
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.77 E-value=32 Score=15.15 Aligned_cols=98 Identities=17% Similarity=0.094 Sum_probs=50.4
Q ss_pred EEEECCHHH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCC-CCCCCCCCCCCCCCCC-EE
Q ss_conf 798602335---5777776641388632787213322221111000001122-2222222-2233345755446740-36
Q gi|254780624|r 73 RVLDVAGGT---GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIE-ANAETLPFEANSFDAC-TL 146 (265)
Q Consensus 73 ~iLDiGcGT---G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~-~da~~lp~~d~sfD~V-~~ 146 (265)
+|-=||+|| |+.+ .++. .+.+|+..|++++-++.+++++.+.-.. ....... .+..++.+-+.--|++ -+
T Consensus 9 ~VaVIGaG~MG~giAa-~~a~---~G~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~a 84 (321)
T PRK07066 9 TFAAIGSGVIGSGWVA-RALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA 84 (321)
T ss_pred EEEEECCCHHHHHHHH-HHHH---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCC
T ss_conf 7999888788899999-9994---79859999698889999999999999999866899631696501468889986359
Q ss_pred EEEECCCHH----HHHHHCCCCHHCCCCCEEE
Q ss_conf 642013213----4432012100048521177
Q gi|254780624|r 147 AFGIRNMPH----ITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 147 sf~l~~~~d----~~~~l~e~~RvLKpGG~~~ 174 (265)
-|.+.++++ +.+.++++-++++|+-.+.
T Consensus 85 D~ViEavpE~l~lK~~lf~~ld~~~~~~aIiA 116 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CEEEECCEECHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 98998776659999999999997679886785
No 434
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=30.65 E-value=39 Score=14.57 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC-CCCC
Q ss_conf 999985206446799779860233557777766413886327872133222211110000011222222222223-3345
Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA-ETLP 135 (265)
Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da-~~lp 135 (265)
|+.+.+.....+. .|+ +|.|.-++...+.....+ .+++.+.++-.|-+.+-+. .|. .+..+..+. ...+
T Consensus 46 r~~iA~~~~v~~~---~I~-vgnGs~ElI~~l~~~~~~-~~~~i~~PtF~~Y~~~a~~---~g~--~~~~vp~~~~~~~~ 115 (332)
T PRK06425 46 EDQIKIYTQGLKI---KVL-IGPGLTHFIYRLLSYINV-GNIIIVEPNFNEYKGYAFT---HGI--RISALPFNLINNNP 115 (332)
T ss_pred HHHHHHHHCCCHH---HEE-ECCCHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHH---CCC--EEEEECCCCCCCCH
T ss_conf 9999988696867---399-822099999999998689-9989968888999999998---699--89995743332588
Q ss_pred --CCCCCCCCCEEEEEECCCHHH------HHHHCCCCHHCCCCCEEEEEE
Q ss_conf --755446740366420132134------432012100048521177630
Q gi|254780624|r 136 --FEANSFDACTLAFGIRNMPHI------TLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 136 --~~d~sfD~V~~sf~l~~~~d~------~~~l~e~~RvLKpGG~~~i~d 177 (265)
..+...|+|+++ |=.|| ...+.++...+++.+.++|+|
T Consensus 116 ~~~~~~~~~lv~i~----nPNNPTG~~~~~~~l~~l~~~~~~~~~~vvvD 161 (332)
T PRK06425 116 EILNNYNFDLIFIV----SPDNPLGNLISRDSLLTISEICRKKGALLFID 161 (332)
T ss_pred HHHHCCCCCEEEEE----CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88845898989994----18172013489999999999605269799996
No 435
>pfam04361 DUF494 Protein of unknown function (DUF494). Members of this family of uncharacterized proteins are often named Smg.
Probab=30.19 E-value=39 Score=14.58 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHH
Q ss_conf 288768657899
Q gi|254780624|r 206 AGDEEPYQYLIE 217 (265)
Q Consensus 206 ~~~~~~Y~yL~~ 217 (265)
++...+|.++.+
T Consensus 133 pg~E~~~~~~E~ 144 (155)
T pfam04361 133 PGQEEAYLQMEE 144 (155)
T ss_pred CCCCCHHHHHHH
T ss_conf 998517999999
No 436
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=30.12 E-value=11 Score=18.13 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCC
Q ss_conf 98999999997599537999855664999999811645434
Q gi|254780624|r 224 NQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCENIGSV 264 (265)
Q Consensus 224 ~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~~~~ 264 (265)
..|....+|.+.||++| ..+-+|| |-.+.++.+.|++
T Consensus 184 RCEKas~~m~~~GF~eV--yhL~GGI--l~Y~e~~~~~g~l 220 (308)
T COG1054 184 RCEKASAWMKENGFKEV--YHLEGGI--LKYLEDVGTEGSL 220 (308)
T ss_pred EEHHHHHHHHHHCCHHH--HCCCCHH--HHHHHHCCCCCCE
T ss_conf 00462899987051353--1202058--7876635765764
No 437
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=30.11 E-value=40 Score=14.51 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=15.9
Q ss_pred EEECCCHH----HHHHHCCCCHHCCCCCEEE
Q ss_conf 42013213----4432012100048521177
Q gi|254780624|r 148 FGIRNMPH----ITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 148 f~l~~~~d----~~~~l~e~~RvLKpGG~~~ 174 (265)
|...++++ +.+.++|+-.+++|+-.+.
T Consensus 81 lVqEaVPE~LdIKq~vf~eLd~~~~~~aIiA 111 (489)
T PRK07531 81 WIQESVPERLDLKHKVLAEIEAAARPDALIG 111 (489)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9998785669999999999997679983898
No 438
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=30.10 E-value=40 Score=14.51 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=15.8
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 997798602335577777664138863
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRS 96 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~ 96 (265)
+..+|+=|| |+|.+..++++.+...+
T Consensus 97 ~~~~i~IIG-G~G~mG~~F~~~f~~sG 122 (374)
T PRK11199 97 DLRPVVIVG-GKGQLGRLFAKMLTLSG 122 (374)
T ss_pred CCCEEEEEE-CCCCHHHHHHHHHHHCC
T ss_conf 987179980-79827799999999679
No 439
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=29.89 E-value=24 Score=15.99 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=46.3
Q ss_pred EEEECCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCC---CCCCCCCC----CC-CCC----
Q ss_conf 798602335--57777766413886327872133222211110000011222222---22222333----45-755----
Q gi|254780624|r 73 RVLDVAGGT--GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCIT---FIEANAET----LP-FEA---- 138 (265)
Q Consensus 73 ~iLDiGcGT--G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~---~~~~da~~----lp-~~d---- 138 (265)
+|-=+|.|+ +.++..++. . +..|+..|+++++++.++..+.+. +...++ .-..+++. +. ..+
T Consensus 5 kv~ViGaG~MG~gIA~~~A~-~--G~~V~l~D~~~~~~~~~~~~i~~~-l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l 80 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFAL-A--GYDVVLKDISPEALERALAYIEKN-LEKLVEKGKLTEEEADAALARITPTTDLAAL 80 (307)
T ss_pred EEEEECCCCHHHHHHHHHHH-C--CCCEEEEECCHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 79997246020999999973-4--995699958989999999999999-9988862787745599997515255766566
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 446740366420132134432012100048521177
Q gi|254780624|r 139 NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
.-.|.|.=+ ...+..=+.+.++++-.+++|+-.+.
T Consensus 81 ~~~DlVIEA-v~E~levK~~vf~~l~~~~~~~aIlA 115 (307)
T COG1250 81 KDADLVIEA-VVEDLELKKQVFAELEALAKPDAILA 115 (307)
T ss_pred CCCCEEEEE-CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 308878885-30159999999999886559885786
No 440
>TIGR00518 alaDH alanine dehydrogenase; InterPro: IPR008141 Alanine dehydrogenases () and pyridine nucleotide transhydrogenase () have been shown to share regions of similarity . Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP^+ to NADPH with the concomitant oxidation of NADH to NAD^+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0000286 alanine dehydrogenase activity, 0006118 electron transport.
Probab=29.36 E-value=41 Score=14.43 Aligned_cols=97 Identities=24% Similarity=0.158 Sum_probs=62.3
Q ss_pred CEEEECCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 7798602335-577777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 72 YRVLDVAGGT-GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 72 ~~iLDiGcGT-G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
..+.-+|.|+ |..+..++.- -.+.++.+|++-.-++..-+. ...+++....++.++.-.-..-|.+.++..+
T Consensus 169 g~~~~~ggg~~g~~~~~~~~g--~g~~~~~~d~n~d~l~~l~~~-----f~~~~~~~~~~~~~~~~~~~~~dl~~~~~l~ 241 (372)
T TIGR00518 169 GDVTILGGGVVGTNAAKMAVG--LGADVTILDLNVDRLRQLDDL-----FGGRIDTRYSNAYELEDAVPEADLLIGAVLI 241 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHC--CCCEEEEEECCHHHHHHHHHH-----HCCCHHHHCCCHHHHHHHHHHHHHEEEEEEE
T ss_conf 526786076112102344313--675156762354665554565-----3120111014534554433221010121120
Q ss_pred CCCHHHHHHHCCCCHHCCCCCEEEE
Q ss_conf 1321344320121000485211776
Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265)
-.-.-+..+-+++...++||..++-
T Consensus 242 ~g~~~p~l~~~~~~~~~~pg~~~~d 266 (372)
T TIGR00518 242 PGAKAPKLVSEELVEQMKPGAVLVD 266 (372)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 5754530221678875178725786
No 441
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.17 E-value=40 Score=14.53 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=19.8
Q ss_pred EEEECCHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH
Q ss_conf 7986023355--777776641388632787213322221111000
Q gi|254780624|r 73 RVLDVAGGTG--DVAFRIAEASDNRSQIVVADINNEMLSVGRDRA 115 (265)
Q Consensus 73 ~iLDiGcGTG--~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~ 115 (265)
+|.=||+||= .++..++.. +..|+.+|++++.++.+++++
T Consensus 5 ~VaViGaGtMG~gIA~~~a~a---G~~V~l~D~~~~~l~~a~~~i 46 (503)
T PRK08268 5 TVAVIGAGAMGAGIAQVAAQA---GHTVLLYDARAGAAAAARDGI 46 (503)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHH
T ss_conf 899979688999999999938---990899979989999999999
No 442
>PRK08238 hypothetical protein; Validated
Probab=29.15 E-value=42 Score=14.41 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC
Q ss_conf 99985206446799779860233-5577777664138863278721332222111100000
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK 117 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~ 117 (265)
+.+++.+.....++.++. +++| .-.++..++++.+---+++|-|-..+|-..+|.+...
T Consensus 77 ~~vl~~l~~~k~~GR~vv-L~Tas~~~~a~~IA~hLglFd~v~aSd~~~NL~g~~Ka~~L~ 136 (481)
T PRK08238 77 EEVLDYLRAERAAGRPIV-LATASDERLAQAVAAHLGLFDGVLASDGTTNLKGAAKAAALV 136 (481)
T ss_pred HHHHHHHHHHHHCCCEEE-EEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 899999999998699799-995886999999998579855355168853467648999999
No 443
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=28.81 E-value=42 Score=14.37 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=31.9
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++|=.|++.| .++..+++ .+++|+.+|.+++-++...+.+...+ .++.++++|..+
T Consensus 5 K~alITGas~GIG~aia~~la~---~Ga~V~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~ 64 (258)
T PRK12429 5 KTALVTGAASGIGLEIALALAK---EGAKVVIADLNDEAAAKAAEAIKKAG--GKAIGVAMDVTD 64 (258)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 9899948875899999999998---79999999798899999999998449--918999835899
No 444
>TIGR00867 deg-1 degenerin; InterPro: IPR004726 The Caenorhabditis elegans mec-4 gene encodes a subunit of a candidate mechano-sensitive ion channel that plays a critical role in touch reception . The product is a mechano-sensory protein (degenerin). At least some of the proteins in this group form part of a mechano-transducing complex for touch sensitivity. Others include the acid-sensing ion channels, ASIC1-3 that are homo- or hetero-oligomeric neuronal H+-gated channels that mediate pain sensation in response to tissue acidosis. Mammalian ENaC (IPR004724 from INTERPRO) is important for the maintenance of Na+ balance and the regulation of blood pressure. Three homologous ENaC subunits, a, b and g, have been shown to assemble to form the highly Na+-selective channel. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=28.54 E-value=43 Score=14.34 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCCCC-CCCC---CEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 2222222333457554-4674---0366420132134432012100048521177
Q gi|254780624|r 124 ITFIEANAETLPFEAN-SFDA---CTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 124 i~~~~~da~~lp~~d~-sfD~---V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
|.+.+-+=++.||||- =|++ ..+||||+ +++|.|+=+|=|-.+
T Consensus 513 vRltvH~~~~~PFPDTFGYSAPTGf~SSFG~~--------lk~~~RLpaPYG~Cv 559 (757)
T TIGR00867 513 VRLTVHDKDEFPFPDTFGYSAPTGFISSFGIK--------LKQMVRLPAPYGDCV 559 (757)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEEE--------ECCCCCCCCCCCCCC
T ss_conf 27676188887888667765783516852352--------200413876888767
No 445
>PRK12939 short chain dehydrogenase; Provisional
Probab=28.52 E-value=13 Score=17.72 Aligned_cols=58 Identities=16% Similarity=0.009 Sum_probs=36.3
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---7777766413886327872133222211110000011222222222223334
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
..+|=-|.+.| .++..+++ .+++|+.+|.+++-++...+.+...+ ..+.+..+|..+.
T Consensus 8 KvalVTGgs~GIG~aia~~la~---~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~ 68 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAE---AGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADP 68 (250)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEEECCCCH
T ss_conf 8799958366899999999998---79999999698899999999999559--9099999248999
No 446
>PRK07576 short chain dehydrogenase; Provisional
Probab=28.19 E-value=43 Score=14.30 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=36.3
Q ss_pred CEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 779860233557777766413-886327872133222211110000011222222222223334
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEAS-DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~-~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
.++|=.|.+.| +-..+++.+ ..+++|+.+|.+++-++.+.+.+.+.+ .++.++.+|+.+.
T Consensus 9 K~alVTGgs~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~ 69 (260)
T PRK07576 9 KNVFVVGGTSG-INLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEALGVSADVRDY 69 (260)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEEECCCCH
T ss_conf 98999589619-9999999999879999999798899999999999539--9489999318999
No 447
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=28.13 E-value=44 Score=14.29 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=24.9
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 999996899899999999759953799985
Q gi|254780624|r 216 IESIRRFPNQQDFAAVISAAGFSNVSFTNY 245 (265)
Q Consensus 216 ~~Si~~f~~~~el~~~l~~aGF~~v~~~~~ 245 (265)
.+|.+...+.++++.++.++||+.|+-+.+
T Consensus 234 ~qS~R~lvnE~evE~~~q~~G~~IVrPEtl 263 (368)
T COG4421 234 AQSMRVLVNEEEVERLLQRSGLTIVRPETL 263 (368)
T ss_pred HHHHHHHHCHHHHHHHHHHCCCEEEECHHC
T ss_conf 457777607899999998669579830115
No 448
>PRK06139 short chain dehydrogenase; Provisional
Probab=28.00 E-value=44 Score=14.28 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=35.5
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+..+|=-|++.| .++..+++. +++|+.+|.+++-|+...+.+.+.+ .++..+.+|..+
T Consensus 6 gKvvlITGASsGIG~aiA~~~A~~---Ga~Vvl~~R~~~~L~~~a~e~~~~G--~~~~~v~~DVsd 66 (324)
T PRK06139 6 GAVVVITGASSGIGRATAEAFARR---GARLVLAARDEEALFEVAEECRALG--AEVLVVPTDVTH 66 (324)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 977999382549999999999987---9989999899999999999999549--948999766788
No 449
>PRK07814 short chain dehydrogenase; Provisional
Probab=27.91 E-value=14 Score=17.56 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=38.6
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---7777766413886327872133222211110000011222222222223334
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
+.++|=-|.+.| .++..+++ .+++|+..|.+++.++...+.+.+.+ .++.++.+|..+.
T Consensus 10 gKvalITGgs~GIG~aia~~la~---~Ga~V~i~~~~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~ 71 (263)
T PRK07814 10 GQVAVVTGAGRGLGAAIALAFAE---AGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHP 71 (263)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCCH
T ss_conf 99899958966899999999998---79989999698999999999998529--9289998158999
No 450
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=27.90 E-value=44 Score=14.27 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHH--------HHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCHHCCCC
Q ss_conf 80179999998520644679977986023355--------7777766413--8863278721332222111100000112
Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTG--------DVAFRIAEAS--DNRSQIVVADINNEMLSVGRDRAFKENL 120 (265)
Q Consensus 51 G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG--------~~~~~l~~~~--~~~~~v~giD~s~~Ml~~a~~r~~~~~~ 120 (265)
|..+.| ..++.|....+. -.+|-+|.| .++..+.+.+ ..-++++|++-|.+.|...-......|.
T Consensus 37 ~~~~l~--~~i~~L~~l~P~---FvSVTyGAggstr~~T~~i~~~i~~~~~i~~~~HLTCvg~t~~~i~~~L~~~~~~GI 111 (296)
T PRK09432 37 MEQTLW--NSIDRLSSLKPK---FVSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTCIDATPEELRTIAKDYWNNGI 111 (296)
T ss_pred HHHHHH--HHHHHHHCCCCC---EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 899999--999998516999---899607989977356999999999874998112666269999999999999997597
Q ss_pred CCCCCCCCCCC
Q ss_conf 22222222223
Q gi|254780624|r 121 QDCITFIEANA 131 (265)
Q Consensus 121 ~~~i~~~~~da 131 (265)
.||--+.||.
T Consensus 112 -~nILALRGD~ 121 (296)
T PRK09432 112 -RHIVALRGDL 121 (296)
T ss_pred -CEEEECCCCC
T ss_conf -5486548989
No 451
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189 Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=27.72 E-value=44 Score=14.25 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=70.8
Q ss_pred HHHHHHHHHHCCCCCCCCEEEE-CC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC-
Q ss_conf 9999998520644679977986-02-33557777766413886327872133222211110000011222222222223-
Q gi|254780624|r 55 FWKEAMVTNLNPRKSKDYRVLD-VA-GGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA- 131 (265)
Q Consensus 55 ~Wr~~~i~~l~~~~~~~~~iLD-iG-cGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da- 131 (265)
.| ..+.+.-.+++|+ ++|= =| +|=|-.++.|++.++ ++|+..==|++-++.|. .+.|-.--|+|...|.
T Consensus 132 VW-~NLF~~g~L~~GE--tvLiHGGaSGIGttAIqLAKA~G--a~V~~TaGS~eK~~~a~---~~LGAd~aINY~e~DFv 203 (334)
T TIGR02824 132 VW-SNLFQRGGLKAGE--TVLIHGGASGIGTTAIQLAKAFG--ARVFTTAGSDEKCATAC---EALGADIAINYREEDFV 203 (334)
T ss_pred HH-HHHHHHCCCCCCC--EEEEEECCCCHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH---HHCCCEEEEECCCCCHH
T ss_conf 88-8687221137897--28997136736799999998569--75999828989999999---86098078607773479
Q ss_pred CCC-CCCCCC--CCCCE----EEEEECCCHHHHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 334-575544--67403----664201321344320121000485211776305
Q gi|254780624|r 132 ETL-PFEANS--FDACT----LAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 132 ~~l-p~~d~s--fD~V~----~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df 178 (265)
|.+ ..-.++ +|+|+ -+| |+.=..+|.++|+++++=|
T Consensus 204 e~~k~~t~g~kGvDVILD~vGg~Y-----------l~~N~~alA~dGRlV~Ig~ 246 (334)
T TIGR02824 204 EVVKEETGGGKGVDVILDIVGGSY-----------LARNIKALALDGRLVQIGF 246 (334)
T ss_pred HHHHHHCCCCCCCCEEEECCCHHH-----------HHHHHHHHHCCCCEEEEEC
T ss_conf 999982689985317985776688-----------9989999840793999850
No 452
>PRK05867 short chain dehydrogenase; Provisional
Probab=27.13 E-value=45 Score=14.18 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 9977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 70 KDYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 70 ~~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
++.++|=-|.+.| .++..+++ .+++|+.+|.+++-++...+.+.+.+ .++.++.+|..+
T Consensus 8 ~gKvalVTGas~GIG~aiA~~la~---~Ga~V~i~~r~~~~~~~~~~ei~~~g--~~~~~~~~Dvt~ 69 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVE---AGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQ 69 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CEEEEEECCCCC
T ss_conf 999899979565999999999998---69999999798899999999998459--919999836999
No 453
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.08 E-value=37 Score=14.74 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=12.8
Q ss_pred HHCCCCHHCCCCCEEEEEEC
Q ss_conf 20121000485211776305
Q gi|254780624|r 159 VLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 159 ~l~e~~RvLKpGG~~~i~df 178 (265)
..+.+...+++||.++.+-+
T Consensus 127 ~~~~~~~~~~~gg~Iv~~s~ 146 (256)
T PRK07889 127 LAKALLPLMNPGGSIVGLDF 146 (256)
T ss_pred HHHHHHHHHCCCCCEEEECC
T ss_conf 99997654216887467457
No 454
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=27.07 E-value=45 Score=14.18 Aligned_cols=31 Identities=13% Similarity=-0.081 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 99999997599537999855664999999811645
Q gi|254780624|r 227 DFAAVISAAGFSNVSFTNYTNGVVALHSGWKCENI 261 (265)
Q Consensus 227 el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~ 261 (265)
....++.+.|++.|+++++.+= ...+|.+|+
T Consensus 316 ~~~~l~~~~gL~RIh~HTl~y~----~~it~~~~~ 346 (451)
T PRK03979 316 AAKILLEELGLERVQVHTRYYI----LYITKKGNP 346 (451)
T ss_pred HHHHHHHHCCCCEEEEEECCEE----EEEEECCCC
T ss_conf 9999999739978999630107----999817986
No 455
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.04 E-value=42 Score=14.42 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHCCCCEEEE
Q ss_conf 9899999999759953799
Q gi|254780624|r 224 NQQDFAAVISAAGFSNVSF 242 (265)
Q Consensus 224 ~~~el~~~l~~aGF~~v~~ 242 (265)
.++.+.+.|+++||+ |+.
T Consensus 80 e~dSWks~L~~~G~~-v~~ 97 (103)
T cd03413 80 EPDSWKSILEAAGIK-VET 97 (103)
T ss_pred CCHHHHHHHHHCCCE-EEE
T ss_conf 822699999977987-579
No 456
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.04 E-value=34 Score=15.02 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=10.4
Q ss_pred EEEECCHHHHHHHHHHH
Q ss_conf 79860233557777766
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIA 89 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~ 89 (265)
-++.-.||-..+...+.
T Consensus 45 lvf~s~~~~~el~~klE 61 (178)
T COG3797 45 LVFESEAGAAELEAKLE 61 (178)
T ss_pred EEEECCCCHHHHHHHHH
T ss_conf 89983787589999999
No 457
>PRK06720 hypothetical protein; Provisional
Probab=27.02 E-value=46 Score=14.17 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=35.1
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+..+|=-|++.| .++..+++ .+++|+..|.+++-++...+.+...+. .+.++.+|..+
T Consensus 16 gKvalITGa~~GIG~a~A~~la~---~Ga~Vvi~d~~~~~~~~~~~~i~~~g~--~a~~~~~Dvs~ 76 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAK---QGAKVIVTDIDQESGQATVEEITNLGG--EALFVSYDMEK 76 (169)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCCCC
T ss_conf 99999989754899999999998---699899952763659999999997499--53789758899
No 458
>pfam07109 Mg-por_mtran_C Magnesium-protoporphyrin IX methyltransferase C-terminus. This family represents the C-terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (EC:2.1.1.11). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor.
Probab=26.26 E-value=47 Score=14.08 Aligned_cols=74 Identities=15% Similarity=0.373 Sum_probs=42.4
Q ss_pred HHHHHHHCCCCHHCCCCCEEEEEECC-CCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHC-CCHHHHHHH
Q ss_conf 13443201210004852117763055-4455101123456531113321025428876865789999968-998999999
Q gi|254780624|r 154 PHITLVLQEIYRILKCGGRLLVLEFS-EVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRF-PNQQDFAAV 231 (265)
Q Consensus 154 ~d~~~~l~e~~RvLKpGG~~~i~df~-~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f-~~~~el~~~ 231 (265)
+|..++|..+.. +-.|.++ |+ -|..+++..++ .+|+++.+...+- ... .+.+++.+.
T Consensus 11 ~d~~~~l~~La~--rt~~~ii---fTfAP~T~~L~~m~---------~vGklFPr~dRsp-------~i~p~~~~~l~~~ 69 (97)
T pfam07109 11 EDAAAMLSHLAS--LTKTRIV---FTFAPKTPLLAALK---------RIGKLFPGSSRST-------RAYPHAEADIQRI 69 (97)
T ss_pred HHHHHHHHHHHH--HCCCCEE---EEECCCCHHHHHHH---------HHHCCCCCCCCCC-------CEEECCHHHHHHH
T ss_conf 999999999997--3179489---99779749999999---------9755189988996-------0787288999999
Q ss_pred HHHCCCCEEEEEECCCC
Q ss_conf 99759953799985566
Q gi|254780624|r 232 ISAAGFSNVSFTNYTNG 248 (265)
Q Consensus 232 l~~aGF~~v~~~~~~~G 248 (265)
+..+||+..+.+..+.|
T Consensus 70 l~~~g~~~~r~~rv~~g 86 (97)
T pfam07109 70 LSELGWQIAREGRVSTG 86 (97)
T ss_pred HHHCCCEEEEEEEECCC
T ss_conf 99779806630110361
No 459
>PRK07890 short chain dehydrogenase; Provisional
Probab=26.22 E-value=47 Score=14.08 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=34.2
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++|=.|.+.| .++..+++ .+++|+.+|.+++-++.+.+.+...+. .+.++.+|..+
T Consensus 6 K~alVTG~s~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~ 65 (258)
T PRK07890 6 KVVVVSGVGPGLGTTLAVRAAR---EGADVVLAARTAERLDEVAKQIDDLGR--RALAVVTDITD 65 (258)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCC
T ss_conf 8899968565899999999998---799899997989999999999996499--58999816999
No 460
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=26.04 E-value=33 Score=15.11 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCE
Q ss_conf 8999999997599537999855664
Q gi|254780624|r 225 QQDFAAVISAAGFSNVSFTNYTNGV 249 (265)
Q Consensus 225 ~~el~~~l~~aGF~~v~~~~~~~Gi 249 (265)
.+++...|++.||. . .+..||+
T Consensus 342 i~~Il~~l~~~G~s-a--~Ni~FG~ 363 (462)
T PRK09198 342 IEAILEALKAKGFA-A--DNIVFGM 363 (462)
T ss_pred HHHHHHHHHHCCCC-C--CCEEEEC
T ss_conf 99999999975986-4--2435511
No 461
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=25.79 E-value=48 Score=14.03 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=37.3
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++|=-|.+.| .++..+++ .+++|+..|.+++.++.+.+.+...+ .++..+.+|..+
T Consensus 11 K~alVTG~s~GIG~aiA~~la~---~Ga~Vii~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~ 70 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAE---AGATIVFNDIKQELVDKGLAAYRELG--IEAHGYVCDVTD 70 (265)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEEECCCC
T ss_conf 9899958576899999999998---69999999599899999999999549--917999932899
No 462
>pfam06725 3D 3D domain. This short presumed domain contains three conserved aspartate residues, hence the name 3D. It has been shown to be part of the catalytic double psi beta barrel domain of MltA.
Probab=25.72 E-value=48 Score=14.02 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=19.3
Q ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 986023355777776641388632787
Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASDNRSQIVV 100 (265)
Q Consensus 74 iLDiGcGTG~~~~~l~~~~~~~~~v~g 100 (265)
=+|+=||+|.-+..++...+..++++-
T Consensus 46 R~Dlf~G~G~~A~~~Ag~~~~~g~~~~ 72 (74)
T pfam06725 46 RIDLFFGTGDEAGALAGWGRKTGRVYI 72 (74)
T ss_pred EEEEEECCHHHHHHHHHHCCEEEEEEE
T ss_conf 789962776999998721741589999
No 463
>KOG2741 consensus
Probab=25.56 E-value=48 Score=14.00 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 342115766761
Q gi|254780624|r 38 SHRYDVMNDLMS 49 (265)
Q Consensus 38 A~~YD~~N~~~S 49 (265)
.+.|+++-.++|
T Consensus 135 ~P~~~~lke~l~ 146 (351)
T KOG2741 135 FPRYAKLKELLS 146 (351)
T ss_pred CCHHHHHHHHHH
T ss_conf 738999999971
No 464
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.55 E-value=17 Score=16.97 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=8.4
Q ss_pred CCEEEECCHHHH
Q ss_conf 977986023355
Q gi|254780624|r 71 DYRVLDVAGGTG 82 (265)
Q Consensus 71 ~~~iLDiGcGTG 82 (265)
+..+|||.+|+.
T Consensus 38 GA~~LDVN~g~~ 49 (268)
T PRK07535 38 GANYLDVNAGTA 49 (268)
T ss_pred CCCEEEEECCCC
T ss_conf 999899608987
No 465
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=25.34 E-value=49 Score=13.97 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=49.6
Q ss_pred EEEECCHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC--CCC-CC----CCCCCCC-----
Q ss_conf 7986023355--77777664138863278721332222111100000112222222--222-23----3345755-----
Q gi|254780624|r 73 RVLDVAGGTG--DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF--IEA-NA----ETLPFEA----- 138 (265)
Q Consensus 73 ~iLDiGcGTG--~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~--~~~-da----~~lp~~d----- 138 (265)
+|-=||+||= .++..++. .+.+|+..|++++.++.+++++.+. +...... ... +. .++.+-+
T Consensus 4 ~VaViGaG~mG~giA~~~a~---~G~~V~l~D~~~~~l~~a~~~i~~~-l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~a 79 (308)
T PRK06129 4 SIAIVGAGLIGRAWAIVFAR---AGHRVRLWDADPAALAAAPAYIAGR-LEDLAAFDLLDGESPDAVLARIRATDSLADA 79 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHCEEECCCHHHH
T ss_conf 79997778999999999985---8993899989889999999999999-9999976999876599998350722888998
Q ss_pred -CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf -446740366420132134432012100048521177
Q gi|254780624|r 139 -NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 -~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
...|.|.=+ +..++.=+.+.++++-++++|+-.+.
T Consensus 80 l~~adlViEa-v~E~l~iK~~lf~~le~~~~~~~Ila 115 (308)
T PRK06129 80 VADADYVQES-APENLELKRALFAELDALAPPHAILA 115 (308)
T ss_pred HCCCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 4749999999-80779999999999996569855898
No 466
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=25.26 E-value=49 Score=13.97 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=18.7
Q ss_pred EEECCHHHH----HHHHHHHHHCCC--CCEEEEECCCCCCCCC
Q ss_conf 986023355----777776641388--6327872133222211
Q gi|254780624|r 74 VLDVAGGTG----DVAFRIAEASDN--RSQIVVADINNEMLSV 110 (265)
Q Consensus 74 iLDiGcGTG----~~~~~l~~~~~~--~~~v~giD~s~~Ml~~ 110 (265)
++=.|.||| -+...|-+..++ +.++++|+++..-+=.
T Consensus 170 ~FVaG~GTGGTITGvG~~LK~~~pkG~~~~~~AVEP~~SPVLS 212 (312)
T TIGR01139 170 AFVAGVGTGGTITGVGEVLKEKKPKGKDIKIVAVEPAESPVLS 212 (312)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
T ss_conf 7997323685154789987400789955899987277431344
No 467
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361 This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=25.18 E-value=47 Score=14.07 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=40.1
Q ss_pred HHHHHHHCCCC---C-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 99985206446---7-99779860233557777766413886327872133222211110000011222222222223
Q gi|254780624|r 58 EAMVTNLNPRK---S-KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA 131 (265)
Q Consensus 58 ~~~i~~l~~~~---~-~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da 131 (265)
+++++.+.... + +..-|.=-+-|+|..-..+++..+ +.++|+|-+-.|- .|++++.+. +-.-++|+.
T Consensus 222 ~~I~~~vk~~~~e~~~~~~P~I~F~~G~g~~l~~~~~~g~--~DvvglDW~v~~~-~a~~~~~~~----kP~~~QGNL 292 (351)
T TIGR01464 222 AKIIEEVKKRLPEFVLENVPVILFAKGAGHLLEELAETGP--ADVVGLDWSVDLK-EARKRVGDG----KPVAIQGNL 292 (351)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCC--CCEEEECCCCCHH-HHHHHHCCC----CCEEEECCC
T ss_conf 9999999876212578988668852877899999970699--2088605888989-999971799----987885643
No 468
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=24.97 E-value=50 Score=13.93 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=27.6
Q ss_pred EEEECCHHHH---HHHHHHHHHCCCCCEEEEEC--CCCCCCCCCCCCH
Q ss_conf 7986023355---77777664138863278721--3322221111000
Q gi|254780624|r 73 RVLDVAGGTG---DVAFRIAEASDNRSQIVVAD--INNEMLSVGRDRA 115 (265)
Q Consensus 73 ~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD--~s~~Ml~~a~~r~ 115 (265)
+|.=||.|+| .+|+.-.+.. .+|.|+--| +|++-|+.++..+
T Consensus 2 kV~LVGAGPGdpeLlTl~A~r~L-~~ADVvlYD~Lv~~~iL~~~~~~A 48 (242)
T TIGR01469 2 KVYLVGAGPGDPELLTLKALRLL-QEADVVLYDRLVSPEILAYAPEQA 48 (242)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHCCEEEEECCCCHHHHHHCCCCC
T ss_conf 48897369888205779999998-629978984278989997178877
No 469
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=24.71 E-value=50 Score=13.90 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCC-EEEEEECCC--CEEEEEEEEEE
Q ss_conf 9999999975995-379998556--64999999811
Q gi|254780624|r 226 QDFAAVISAAGFS-NVSFTNYTN--GVVALHSGWKC 258 (265)
Q Consensus 226 ~el~~~l~~aGF~-~v~~~~~~~--Gi~~i~~g~Kp 258 (265)
+.+...+.+.|+. .+..+.+-- --+|+|+..++
T Consensus 321 ~~l~~~l~~~g~~~~i~aKqLYHDREEvTvh~~~~~ 356 (358)
T COG2933 321 ARLEEQLDEHGINAQIQAKQLYHDREEVTVHVRRIW 356 (358)
T ss_pred HHHHHHHHHCCCCEEECHHHHCCCHHHEEEEEEECC
T ss_conf 999999985697622213241044121688887115
No 470
>KOG1202 consensus
Probab=24.60 E-value=16 Score=17.04 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=11.6
Q ss_pred HHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf 34432012100048521177630
Q gi|254780624|r 155 HITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 155 d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
|+.++|+++...||.+|.+++.|
T Consensus 1238 d~~~~le~~~~slre~GFLll~e 1260 (2376)
T KOG1202 1238 DPAKALENCVASLREGGFLLLEE 1260 (2376)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEH
T ss_conf 80899999999976277399871
No 471
>PRK07478 short chain dehydrogenase; Provisional
Probab=24.51 E-value=51 Score=13.87 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=35.7
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
..+|=-|++.| .++..+++ .+++|+..|.+++-++...+.+.+.+ .++.++.+|..+
T Consensus 7 KvalVTGas~GIG~aiA~~la~---~Ga~Vvi~~r~~~~l~~~~~ei~~~g--~~~~~~~~Dvt~ 66 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAR---EGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRD 66 (254)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 8799958876899999999998---79999999798899999999999649--908999768999
No 472
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=24.38 E-value=51 Score=13.86 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=40.7
Q ss_pred EEEECCHH-HH-HHHHHHHHHCCCCCEEEEECCC--------------CCCC-----CCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 79860233-55-7777766413886327872133--------------2222-----11110000011222222222223
Q gi|254780624|r 73 RVLDVAGG-TG-DVAFRIAEASDNRSQIVVADIN--------------NEML-----SVGRDRAFKENLQDCITFIEANA 131 (265)
Q Consensus 73 ~iLDiGcG-TG-~~~~~l~~~~~~~~~v~giD~s--------------~~Ml-----~~a~~r~~~~~~~~~i~~~~~da 131 (265)
|||=+||| -| .++..|+... -++++-+|.- ++-+ +.|++++.+.+..-+|.-.+.+.
T Consensus 1 KVlvvGaGglGce~~k~La~~G--vg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v 78 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG--FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9899948887999999999839--98699975990056770130244644268822999999999878997799980556
Q ss_pred CCCC-CCC---CCCCCCEEEEEECCCHHHHHHHCCCCHHCCC
Q ss_conf 3345-755---4467403664201321344320121000485
Q gi|254780624|r 132 ETLP-FEA---NSFDACTLAFGIRNMPHITLVLQEIYRILKC 169 (265)
Q Consensus 132 ~~lp-~~d---~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKp 169 (265)
.+.. |.+ .+||+|+. ++-|++-+.-.=+-+...-||
T Consensus 79 ~~e~~~~~~f~~~~DvVi~--alDN~~aR~~vN~~c~~~~~P 118 (234)
T cd01484 79 GPEQDFNDTFFEQFHIIVN--ALDNIIARRYVNGMLIFLIVP 118 (234)
T ss_pred CCCCCCCHHHHHHCCEEEE--CCCCHHHHHHHHHHHHHHCCC
T ss_conf 8621057988852999998--857888999999999980998
No 473
>PRK07660 consensus
Probab=24.27 E-value=51 Score=13.85 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=50.4
Q ss_pred EEEECCHHH--HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCC---CCCCC----CCCCCCCC-----
Q ss_conf 798602335--57777766413886327872133222211110000011222222---22222----33345755-----
Q gi|254780624|r 73 RVLDVAGGT--GDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCIT---FIEAN----AETLPFEA----- 138 (265)
Q Consensus 73 ~iLDiGcGT--G~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~---~~~~d----a~~lp~~d----- 138 (265)
+|.=+|+|| ..++..++.. +.+|+..|++++.++.+++++.+.- ...++ ....+ ...+.+.+
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~---G~~V~l~D~~~~~l~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (283)
T PRK07660 5 KIVVIGAGQMGSGIAQVCAMA---GYDVKVQDLKQEQLDRGLAIITKNL-ARQVEKGRMKEEEKEATLNRLTVTLDLDCV 80 (283)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 899989698999999999966---9818999798899999999999999-999870589989999998358776898997
Q ss_pred CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE
Q ss_conf 446740366420132134432012100048521177
Q gi|254780624|r 139 NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265)
Q Consensus 139 ~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265)
...|.|.=+ ...+++=+.+.++++-++++|+-.+.
T Consensus 81 ~~aDlViEa-v~E~l~iK~~lf~~l~~~~~~~~Ila 115 (283)
T PRK07660 81 KEADLIIEA-AVEKMDIKKKIFANLDEIAPEHAILA 115 (283)
T ss_pred CCCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 689999987-85754442999999996479971898
No 474
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.99 E-value=52 Score=13.81 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=35.8
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
..+|=-|++.| .++..+++ .+++|+.+|.+++-++.+.+.+.+.. ..++.++.+|..+
T Consensus 8 KvalVTGa~~GIG~aiA~~~a~---~Ga~V~i~~~~~~~~~~~~~~l~~~~-g~~~~~~~~Dvt~ 68 (259)
T PRK07063 8 KVALVTGAAQGIGAAIARAFVR---EGAAVALADLDAALAERAAAAIARQT-GARVLALPADVTR 68 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHC-CCEEEEEECCCCC
T ss_conf 8899958787899999999998---79989999798789999999998850-9918999836899
No 475
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=23.93 E-value=52 Score=13.80 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=37.1
Q ss_pred CEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77986023355---7777766413886327872133222211110000011222222222223334
Q gi|254780624|r 72 YRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265)
Q Consensus 72 ~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265)
..+|=.|++.| .++..+++ .+++|+.+|.+++-++.+.+.+...+ .++.+..+|..+.
T Consensus 15 K~alITGgs~GIG~~ia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~ 75 (259)
T PRK06124 15 QVALVTGSARGLGLEIARALAE---AGAHVLVNGRNAARVEAAVAALRAAG--GAAEALVFDISDE 75 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEEECCCCH
T ss_conf 9899928674899999999998---79999999698899999999999659--9589999517999
No 476
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=23.93 E-value=52 Score=13.80 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=52.3
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCEEEE
Q ss_conf 7798602335577777664138863278721332222111100000112222222222233345755---4467403664
Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA---NSFDACTLAF 148 (265)
Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d---~sfD~V~~sf 148 (265)
..|+=+|-- -..++.++ ..+-.-+|.-+||.+..++.-.+-+++.+. +||+...-|..+ |+|+ ..||+...-
T Consensus 154 K~I~vvGDD-DLtsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDvfiTD- 228 (354)
T COG1568 154 KEIFVVGDD-DLTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDVFITD- 228 (354)
T ss_pred CEEEEECCC-HHHHHHHH-HCCCCCEEEEEECHHHHHHHHHHHHHHHCC-CCHHHEEEHHCC-CCHHHHHHHCCEEECC-
T ss_conf 768997075-06578898-638873379983158999999999998483-315540305104-5839888507764359-
Q ss_pred EECCCHHHHHHHCCCCHHCCCC---CEEEE
Q ss_conf 2013213443201210004852---11776
Q gi|254780624|r 149 GIRNMPHITLVLQEIYRILKCG---GRLLV 175 (265)
Q Consensus 149 ~l~~~~d~~~~l~e~~RvLKpG---G~~~i 175 (265)
--..++-....+..=...||.- |.+.|
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred CHHHHHHHHHHHHCCHHHHCCCCCCCEEEE
T ss_conf 633579999998511887358874536866
No 477
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=23.85 E-value=28 Score=15.49 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=20.0
Q ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCC
Q ss_conf 6023355777776641388632787213-3222211110
Q gi|254780624|r 76 DVAGGTGDVAFRIAEASDNRSQIVVADI-NNEMLSVGRD 113 (265)
Q Consensus 76 DiGcGTG~~~~~l~~~~~~~~~v~giD~-s~~Ml~~a~~ 113 (265)
=|-|=|-.+.+.|..- -++.++|- -.-|++.|.+
T Consensus 135 VVSCNTTgL~RTln~i----nd~~~v~kVrAv~vRRaAD 169 (335)
T TIGR01546 135 VVSCNTTGLVRTLNAI----NDLSKVEKVRAVMVRRAAD 169 (335)
T ss_pred EEEECHHHHHHHHHHH----HHHCCCCEEEEEEEECCCC
T ss_conf 9841626788766433----2330610589999853789
No 478
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=23.57 E-value=53 Score=13.76 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=61.5
Q ss_pred CCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 9779860233-557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 71 DYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 71 ~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
+.++|=||.| +|.++...+... .|.-+=+..--.+.|++-+.+.+-+..|.|..--.++|.-.=...|+|+||=|
T Consensus 185 ~~~~LliGAGeMg~Lva~~L~~~----~v~~~~i~NRt~~rA~~LA~e~~~P~~~~f~~La~~~L~~~L~~~DivissTg 260 (436)
T TIGR01035 185 GKKVLLIGAGEMGELVAKHLREK----GVGKVLIANRTYERAEKLAKELGGPEAVKFEALALEKLEEALAEADIVISSTG 260 (436)
T ss_pred CCEEEEEECCHHHHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf 64189982745799999999648----95289885567789999998707866454445548999999742889998557
Q ss_pred E-C---CCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC--CHHHHHHHHHHHC
Q ss_conf 0-1---32134432012100048521177630554455--1011234565311
Q gi|254780624|r 150 I-R---NMPHITLVLQEIYRILKCGGRLLVLEFSEVQG--PVFKKIYDMWSFK 196 (265)
Q Consensus 150 l-~---~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~--~~~~~~~~~y~~~ 196 (265)
= + +-.|.+.++++-.| =...+.++++|++.|.+ +-...+=..|++.
T Consensus 261 A~~pi~~~~~~e~a~~~Rr~-de~~~pl~~~DIAvPRdvd~~v~~L~~vfLy~ 312 (436)
T TIGR01035 261 APEPIVSKEDVERALKERRR-DEAARPLFIVDIAVPRDVDPEVAKLEGVFLYD 312 (436)
T ss_pred CCCCCCCCHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCHHHHCCCCEEEEE
T ss_conf 65310020348999997222-00158869997588998637862229669973
No 479
>PRK07832 short chain dehydrogenase; Provisional
Probab=23.33 E-value=53 Score=13.73 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=20.3
Q ss_pred EEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC
Q ss_conf 7986023355---777776641388632787213322221111000001
Q gi|254780624|r 73 RVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE 118 (265)
Q Consensus 73 ~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~ 118 (265)
++|=-|++.| .++..+++. +++|+.+|.+++-|+...+.+...
T Consensus 2 ~alITGassGIG~a~A~~la~~---Ga~v~l~~r~~~~l~~~~~~l~~~ 47 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQ---GAELFLTDRDADGLAQTVADARAL 47 (272)
T ss_pred EEEEECCCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 7999472019999999999988---998999989889999999999845
No 480
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=23.30 E-value=53 Score=13.73 Aligned_cols=20 Identities=40% Similarity=0.484 Sum_probs=10.4
Q ss_pred HHHHHCCC---CHHCCCCCEEEE
Q ss_conf 44320121---000485211776
Q gi|254780624|r 156 ITLVLQEI---YRILKCGGRLLV 175 (265)
Q Consensus 156 ~~~~l~e~---~RvLKpGG~~~i 175 (265)
..++++|+ -|.|-..|..++
T Consensus 159 ~~rfl~eip~FE~mL~~~Gi~l~ 181 (270)
T COG2326 159 YKRFLREIPEFERMLVESGIILV 181 (270)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 99999870699999986883999
No 481
>KOG2014 consensus
Probab=23.21 E-value=54 Score=13.72 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=42.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEC-CHHHHHHHHHHHHHCC--CCCEEEEEC--------CCCCCC
Q ss_conf 21157667614801799999985206446799779860-2335577777664138--863278721--------332222
Q gi|254780624|r 40 RYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDV-AGGTGDVAFRIAEASD--NRSQIVVAD--------INNEML 108 (265)
Q Consensus 40 ~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDi-GcGTG~~~~~l~~~~~--~~~~v~giD--------~s~~Ml 108 (265)
-||+ |-|.|--.+.+.|. .++||=+ +||+|. ++++..- .-++++-+| +..+.|
T Consensus 13 lYDR--------QIRLWG~~AQ~~lr-----~s~VLlig~k~lga---EiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFl 76 (331)
T KOG2014 13 LYDR--------QIRLWGLEAQRRLR-----KSHVLLIGGKGLGA---EIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFL 76 (331)
T ss_pred HHHH--------HHHHCCHHHHHHHH-----HCEEEEECCCHHHH---HHHHHHHHCCCCEEEEEECCCCCHHCCCCEEE
T ss_conf 8888--------98871678887644-----46299964853888---88777533056616884034566411774167
Q ss_pred C-----------CCCCCHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEE
Q ss_conf 1-----------11100000112222222222233345--7554467403664
Q gi|254780624|r 109 S-----------VGRDRAFKENLQDCITFIEANAETLP--FEANSFDACTLAF 148 (265)
Q Consensus 109 ~-----------~a~~r~~~~~~~~~i~~~~~da~~lp--~~d~sfD~V~~sf 148 (265)
- ...+|+++.+.-=.|.+...|.+..+ |- .+||+|+...
T Consensus 77 i~~~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff-~qFdlVV~~~ 128 (331)
T KOG2014 77 ISASSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFF-TQFDLVVATD 128 (331)
T ss_pred ECHHHHCHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCHHHH-HCEEEEEEEC
T ss_conf 745451308999999999864975688732565542244455-1502999833
No 482
>pfam04189 Gcd10p Gcd10p family. eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.
Probab=23.18 E-value=54 Score=13.71 Aligned_cols=10 Identities=50% Similarity=1.099 Sum_probs=5.3
Q ss_pred CCCCEEEEEE
Q ss_conf 8521177630
Q gi|254780624|r 168 KCGGRLLVLE 177 (265)
Q Consensus 168 KpGG~~~i~d 177 (265)
+|||+++++|
T Consensus 201 ~~~g~~lv~d 210 (300)
T pfam04189 201 RAGGRYLVVD 210 (300)
T ss_pred CCCCEEEEEE
T ss_conf 9898699996
No 483
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.17 E-value=41 Score=14.48 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=9.3
Q ss_pred HHHCCCCEEEEEECCCCEEE
Q ss_conf 99759953799985566499
Q gi|254780624|r 232 ISAAGFSNVSFTNYTNGVVA 251 (265)
Q Consensus 232 l~~aGF~~v~~~~~~~Gi~~ 251 (265)
+...|+..|...-+++|.++
T Consensus 280 ~~~s~~~~id~i~LaGggA~ 299 (354)
T COG4972 280 LSQSEMVDIDQILLAGGGAS 299 (354)
T ss_pred HHCCCCCEEEEEEEECCCCC
T ss_conf 74356514547998469610
No 484
>PRK06949 short chain dehydrogenase; Provisional
Probab=23.06 E-value=54 Score=13.70 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=38.0
Q ss_pred CCEEEECCHHHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 977986023355---777776641388632787213322221111000001122222222222333
Q gi|254780624|r 71 DYRVLDVAGGTG---DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 71 ~~~iLDiGcGTG---~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+.++|=-|++.| .++..+++ .+++|+.+|.+.+-++...+.+...+. ...++.+|..+
T Consensus 9 gKvalVTGas~GIG~aiA~~la~---~Ga~V~i~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dv~~ 69 (258)
T PRK06949 9 GKVALVTGASSGLGQRFAQVLSQ---AGAKVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTD 69 (258)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEECCCCC
T ss_conf 99899958577999999999998---799999996988999999999996599--28999826899
No 485
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=22.98 E-value=54 Score=13.69 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=30.7
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99852064467997798602335577777664138863278721332
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINN 105 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~ 105 (265)
.+++.+...+.++..++|-|...-+.+..+.+.. + .+++-+|...
T Consensus 21 ~v~e~L~~~~~~~~~vidgGt~pe~~~~~i~~~~-p-~~iIiVDA~d 65 (156)
T PRK11544 21 LLAEKCAAAPKGGWVVIDGGSAPENDIVAIRELR-P-TRLLIVDATD 65 (156)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC-C-CEEEEEECHH
T ss_conf 9999997378998499979888699999987018-9-9799997144
No 486
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein; InterPro: IPR013455 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Several bacterial species use the enzymes xylose isomerase and xylulokinase for xylose utilisation. This entry represents the ATP-binding cassette (ABC) subunit of the known, or predicted, high-affinity xylose ABC transporter used for xylose import. The genes encoding these proteins, which closely resemble other sugar transport ABC transporter genes, are typically found near xylose utilisation enzymes and regulatory proteins. .
Probab=22.90 E-value=54 Score=13.68 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCCCCCE-EEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9998520644679977-98602335577777664138863278721332222
Q gi|254780624|r 58 EAMVTNLNPRKSKDYR-VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML 108 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~-iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml 108 (265)
+.+++.+.....+..+ |-|+|.|.=.+ .++|+..++++++.-+|=-...|
T Consensus 122 ~~Ll~~~~~~~~~~~rPV~~~G~G~QQL-vEIAKALNK~~rLLILDEP~~sL 172 (501)
T TIGR02633 122 KELLRELKLDASNVTRPVGDLGLGQQQL-VEIAKALNKQVRLLILDEPSASL 172 (501)
T ss_pred HHHHHHCCCCCCCCCCCHHHHCCCCHHH-HHHHHHHCCCEEEEEEECCCHHH
T ss_conf 9999854455577745425516860377-78888743211577741885566
No 487
>PRK09401 reverse gyrase; Reviewed
Probab=22.80 E-value=55 Score=13.66 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHH------HHHHHHHHHCCCCCE
Q ss_conf 99999999999876342115766761480179999998520644679977986023355------777776641388632
Q gi|254780624|r 24 EEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTG------DVAFRIAEASDNRSQ 97 (265)
Q Consensus 24 ~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG------~~~~~l~~~~~~~~~ 97 (265)
++.-+...++|-++- .+.. +|..|.|-++++. ++...++ .-+|.| .++..++++.+ +
T Consensus 61 ~~~~~~f~~fF~~~~-G~~~------w~~Qr~WakR~~~------g~SFaii-APTG~GKTtfgl~~sly~a~kgk---k 123 (1176)
T PRK09401 61 EEEYKEFEEFFKKKV-GSEP------WSLQRTWAKRLLL------GESFAII-APTGVGKTTFGLVMALYLAKKGK---K 123 (1176)
T ss_pred HHHHHHHHHHHHHHH-CCCC------CHHHHHHHHHHHC------CCCEEEE-CCCCCCHHHHHHHHHHHHHHCCC---E
T ss_conf 999999999999986-8998------4889999999866------8974898-88998888999999999986598---3
Q ss_pred EEEECCCCCCCCCCCCCHHC----CCCCCCCCCCCCCCCCCC-------CCCCCCC--CCEEEEEECCCHHHHH
Q ss_conf 78721332222111100000----112222222222233345-------7554467--4036642013213443
Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFK----ENLQDCITFIEANAETLP-------FEANSFD--ACTLAFGIRNMPHITL 158 (265)
Q Consensus 98 v~giD~s~~Ml~~a~~r~~~----~~~~~~i~~~~~da~~lp-------~~d~sfD--~V~~sf~l~~~~d~~~ 158 (265)
++-+=+....+.++-+|+.. .+...++-+.+++...-. ++.+.|| +.|+.|..+|+....+
T Consensus 124 s~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~~~~~y~~~~~~~~kee~~~~~~~gdfdIlitT~~fl~kn~~~l~~ 197 (1176)
T PRK09401 124 SYIIFPTRLLVEQVVEKLRKLAEKVGVKVRLLYYHSSLKKKEKEEFLERLEEGDFDILVTTSQFLSKNFDELPK 197 (1176)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCC
T ss_conf 99996888999999999999999709984089985677666789999886559986899856767654876035
No 488
>KOG0564 consensus
Probab=22.72 E-value=19 Score=16.57 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCC------EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 2335577777664138863------2787213322221111000001122222222222333457554467403664201
Q gi|254780624|r 78 AGGTGDVAFRIAEASDNRS------QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIR 151 (265)
Q Consensus 78 GcGTG~~~~~l~~~~~~~~------~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~ 151 (265)
|.+|+..+..++....... +++|.....+|++.|-+++...|. .||--++|| .|.....++-+...| +
T Consensus 58 gG~ta~~s~~ias~~q~~~~v~t~mHlTCtn~~~~~Id~aLe~a~~~Gi-rNILALRGD---pP~g~d~~~~~e~gF--~ 131 (590)
T KOG0564 58 GGSTAELSLGIASSAQNVCGLETCMHLTCTNMPKEMIDKALEQAKALGI-RNILALRGD---PPIGQDKWVEEEGGF--R 131 (590)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-HHHHHHCCC---CCCCCCCCCCCCCCC--H
T ss_conf 8983424689999998850811223310257618999999999998072-242442589---999865320035771--2
Q ss_pred CCHHHHHHHCCCC
Q ss_conf 3213443201210
Q gi|254780624|r 152 NMPHITLVLQEIY 164 (265)
Q Consensus 152 ~~~d~~~~l~e~~ 164 (265)
+-.|..+-+++-|
T Consensus 132 yA~DLVr~Irs~Y 144 (590)
T KOG0564 132 YAVDLVRYIRSKY 144 (590)
T ss_pred HHHHHHHHHHHHH
T ss_conf 5799999999982
No 489
>PRK07102 short chain dehydrogenase; Provisional
Probab=22.64 E-value=55 Score=13.64 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 7986023355777776641388632787213322221111000001122222222222333
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
+||=.|++.|-=.....+....+++|+.++-+++-|+...+.+...+. ..+.....|+.+
T Consensus 3 ~vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~~~~l~~~~~-~~~~~~~~D~~~ 62 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDTERLERIAADLEARGA-VAVATHELDILD 62 (243)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCCC
T ss_conf 799915745999999999998799899998988999999999985358-628998434036
No 490
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=22.22 E-value=56 Score=13.59 Aligned_cols=92 Identities=18% Similarity=0.054 Sum_probs=0.0
Q ss_pred HH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH
Q ss_conf 33-55777776641388632787213322221111000001122222222222333457554467403664201321344
Q gi|254780624|r 79 GG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHIT 157 (265)
Q Consensus 79 cG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~ 157 (265)
|| ||+++..+++...++..+..+ +-....+..|+++.......+-..+...-.++|.++-.|=+.++.=+. .-+++
T Consensus 173 vGa~G~Ia~~Iar~la~~~~~~~l-l~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~~g~--~I~pq 249 (351)
T COG5322 173 VGATGDIASAIARWLAPKVGVKEL-LLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMPKGV--EIFPQ 249 (351)
T ss_pred ECCCCHHHHHHHHHHCCCCCEEEE-ECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCC--EECHH
T ss_conf 247854899999876346677998-635187641466553201568871641541044613399996169985--21553
Q ss_pred HHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 32012100048521177630554455
Q gi|254780624|r 158 LVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 158 ~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
. ||||-.++ |=+.|.+
T Consensus 250 ~--------lkpg~~iv--D~g~P~d 265 (351)
T COG5322 250 H--------LKPGCLIV--DGGYPKD 265 (351)
T ss_pred H--------CCCCEEEE--CCCCCCC
T ss_conf 3--------36970897--4875766
No 491
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=22.20 E-value=56 Score=13.59 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 998520644679977986023355-77777664138863278721332222111100000112222222
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTG-DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265)
..++.-.+....+.+||=|||-|| -++.+++-.++.++.-+||=+-..--+ +|....|+.+++-|
T Consensus 29 ~yvk~~~~~~~gpK~VLViGaStGyGLAsRI~aaFg~gA~TiGV~fEr~~~~---~k~gtaGWYN~~aF 94 (400)
T PRK13656 29 AYVKAAGPIANGPKKVLVIGASSGYGLASRITAAFGSGADTLGVFFERPGSE---KKPGTAGWYNSAAF 94 (400)
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCC---CCCCCCCCHHHHHH
T ss_conf 9997168867899638999468763199999998548987267885158889---98778643168999
No 492
>PRK12829 short chain dehydrogenase; Provisional
Probab=22.05 E-value=56 Score=13.57 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222222333
Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
.++.+....++ ++|=-|.+.|.=..-.......+++|+.+|.+++-++...+++.. .++..+++|..+
T Consensus 2 ~m~~m~~L~GK--valVTGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~----~~~~~~~~Dvt~ 69 (264)
T PRK12829 2 AIDLLKPLDGL--RVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG----AKVTATVADVAD 69 (264)
T ss_pred HHHCCCCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC----CCEEEEEEECCC
T ss_conf 42257689999--799947376899999999998799899997998999999997479----975999962899
No 493
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=21.92 E-value=57 Score=13.55 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
Q ss_conf 3557777766-413886327872133222211110000011222222222223334575544674036642013213443
Q gi|254780624|r 80 GTGDVAFRIA-EASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITL 158 (265)
Q Consensus 80 GTG~~~~~l~-~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~ 158 (265)
|.|.+-..++ +.....-+|++.|.+++.++...+.-.. ...+.+++--.-+.-++|++. +..-+..+.
T Consensus 7 GLG~MG~~mA~nL~~~G~~V~v~d~~~~~~~~~~~~g~~---------~~~s~~e~~~~l~~~~vI~~~--vp~g~~v~~ 75 (298)
T PRK12490 7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGIT---------ARHSLEELVSKLEAPRAIWVM--VPAGEVTES 75 (298)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCE---------ECCCHHHHHHHCCCCCEEEEE--CCCCHHHHH
T ss_conf 346768999999997799489984998999999986995---------428999999737899889997--689455999
Q ss_pred HHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCC
Q ss_conf 2012100048521177630554455101123456531113321025428
Q gi|254780624|r 159 VLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAG 207 (265)
Q Consensus 159 ~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~ 207 (265)
++.++...|+||-.++ |.++.....-+........+-+.++.--+++
T Consensus 76 vi~~l~~~L~~g~iiI--D~sts~~~~t~~~~~~l~~~gi~flDapVSG 122 (298)
T PRK12490 76 VLKDLYPLLSPGDIVI--DGGNSRYKDDLRRAEELAERGIHYVDCGTSG 122 (298)
T ss_pred HHHHHHHHCCCCCEEE--CCCCCCHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 9996885269998885--2887899999999999997599030553578
No 494
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=21.90 E-value=57 Score=13.55 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCEEEEE
Q ss_conf 233557777766413886327872133222211110000011222222222223334575--------544674036642
Q gi|254780624|r 78 AGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE--------ANSFDACTLAFG 149 (265)
Q Consensus 78 GcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~--------d~sfD~V~~sf~ 149 (265)
|+|-=-.+-.+|.++...++=+++=-+...-.-|.+.+...+-.-+|.+.....+.-|.. ...+|+|.+--+
T Consensus 107 GsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~i~~~a~~~~k~~DvviiDTA 186 (433)
T PRK00771 107 GSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGDPKEKDAVKIVKEGLEKLKKVDVIIVDTA 186 (433)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 89789999999999997799467850678836899999999986388731788999999999999998456988999776
Q ss_pred --ECCCHHHHHHHCCCCHHCCCCCEEEEEE
Q ss_conf --0132134432012100048521177630
Q gi|254780624|r 150 --IRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265)
Q Consensus 150 --l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265)
++.=.+.-.-|+++.++.+|.=.++++|
T Consensus 187 GRl~~d~~Lm~El~~i~~~~~P~e~llV~D 216 (433)
T PRK00771 187 GRHKLEKDLIEEMKQIKEITKPDEVILVID 216 (433)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 521040999999999987757976899865
No 495
>PRK06227 consensus
Probab=21.87 E-value=20 Score=16.42 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265)
++.++|=-|.+.|.=..........+++|+..|.+++-.....+.+...+ .++.++++|..+..--++-+|.+.-.|+
T Consensus 4 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G 81 (256)
T PRK06227 4 SGKVAIVTGGGQGIGAAIAQTFAENGAKVVIADIDEEAGLEREEMLRSNG--LDALFVKTDVSDEEDVKNMVRKTVERYG 81 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99889995866889999999999879999999698889999999999559--9189998168999999999999999829
No 496
>PRK05875 short chain dehydrogenase; Provisional
Probab=21.79 E-value=57 Score=13.54 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC-CCCCCCCCCCC
Q ss_conf 99779860233557777766413886327872133222211110000011222-22222222333
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD-CITFIEANAET 133 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~-~i~~~~~da~~ 133 (265)
++.++|=.|++.|.=..-..+....+++|+.++.+++-++.+.+++....... .+.+..+|..+
T Consensus 6 ~gK~alVTGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~~~~~~v~~~~~Dvs~ 70 (277)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAALVAAGAAVMIVGRNPDKLAAAAEEIEALAGGAGAVRYEPADVTN 70 (277)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 99989994887499999999999879989999798899999999999612788628999578999
No 497
>PRK03430 hypothetical protein; Validated
Probab=21.64 E-value=57 Score=13.56 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHH---HH--CCCHHHHHHHHHHCCCCE
Q ss_conf 789999---96--899899999999759953
Q gi|254780624|r 214 YLIESI---RR--FPNQQDFAAVISAAGFSN 239 (265)
Q Consensus 214 yL~~Si---~~--f~~~~el~~~l~~aGF~~ 239 (265)
||-++. .. .|+.+++...|.+|||.+
T Consensus 7 YLFEnY~~~d~~~~~d~~~L~~eL~~aGF~~ 37 (157)
T PRK03430 7 YLFETYIHNEAELRVDQDKLEDDLTDAGFHR 37 (157)
T ss_pred EHHHHCCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 2213114577767999999999999859987
No 498
>PRK06172 short chain dehydrogenase; Provisional
Probab=21.63 E-value=58 Score=13.51 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 9977986023355777776641388632787213322221111000001122222222222333
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265)
++..+|=-|.+.|.=..........+++|+.+|.+++-++...+.+.+.+ .++.++.+|..+
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~ 67 (253)
T PRK06172 6 SGQVALVTGGAAGIGRATAIAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFIACDVTR 67 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCCC
T ss_conf 99989993757689999999999879989999798899999999999649--937999818999
No 499
>PRK06198 short chain dehydrogenase; Provisional
Probab=21.15 E-value=19 Score=16.59 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9977986023355777776641388632-787213322221111000001122222222222333457554467403664
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265)
++.++|=-|++.|.=..-.......+++ |+..+.+++.++...+.+...+ .++.++.+|..+..--.+-++.+...|
T Consensus 5 ~gK~alVTGas~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~f 82 (268)
T PRK06198 5 DGKIALVTGGTQGLGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALG--AKAVFVQADLAKVEDCRAVVAAADEAF 82 (268)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 998899958577899999999998799389996298889999999999549--967999826899999999999999983
Q ss_pred E
Q ss_conf 2
Q gi|254780624|r 149 G 149 (265)
Q Consensus 149 ~ 149 (265)
+
T Consensus 83 G 83 (268)
T PRK06198 83 G 83 (268)
T ss_pred C
T ss_conf 9
No 500
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=21.14 E-value=46 Score=14.17 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHHHH
Q ss_conf 798602335577777664
Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAE 90 (265)
Q Consensus 73 ~iLDiGcGTG~~~~~l~~ 90 (265)
+|| ++||+|-.+..++.
T Consensus 2 kIl-VaCGsGiaTSt~v~ 18 (89)
T cd05566 2 KIL-VACGTGVATSTVVA 18 (89)
T ss_pred EEE-EECCCCCHHHHHHH
T ss_conf 499-99899703999999
Done!