HHsearch alignment for GI: 254780624 and conserved domain: pfam01269
>pfam01269 Fibrillarin Fibrillarin.
Probab=97.96 E-value=7.2e-05 Score=51.53 Aligned_cols=96 Identities=13% Similarity=0.190 Sum_probs=69.7
Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC----CCCCCCHHCCCCCCCCCCCCCCCCCCC----CCCC
Q ss_conf 67997798602335577777664138863278721332222----111100000112222222222233345----7554
Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML----SVGRDRAFKENLQDCITFIEANAETLP----FEAN 139 (265)
Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml----~~a~~r~~~~~~~~~i~~~~~da~~lp----~~d~ 139 (265)
T Consensus 71 i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~-------R~NIvPIl~DAr~P~~Y~~lv-~ 142 (229)
T pfam01269 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKK-------RPNIVPILEDARHPQKYRMLV-E 142 (229)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC-------CCCCEEEECCCCCHHHHHHHC-C
T ss_conf 58998799944777985767887228895399997173557899999742-------799445766778756765425-5
Q ss_pred CCCCCEEEEEECCCHHHH---HHHCCCCHHCCCCCEEEEE
Q ss_conf 467403664201321344---3201210004852117763
Q gi|254780624|r 140 SFDACTLAFGIRNMPHIT---LVLQEIYRILKCGGRLLVL 176 (265)
Q Consensus 140 sfD~V~~sf~l~~~~d~~---~~l~e~~RvLKpGG~~~i~ 176 (265)
T Consensus 143 ~VD~ifq-----DvaQ~~Qa~i~~~Na~~FLk~gG~~~l~ 177 (229)
T pfam01269 143 MVDVIFA-----DVAQPDQARILALNAKYFLKNGGYFMIS 177 (229)
T ss_pred CCCEEEE-----CCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6668996-----2787778999999999861269889999