HHsearch alignment for GI: 254780624 and conserved domain: pfam03514
>pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction.
Probab=92.76 E-value=0.66 Score=26.01 Aligned_cols=201 Identities=17% Similarity=0.156 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHH----HHHHHH--CCCCCEEEEECC-
Q ss_conf 9999876342115766761480179999998520644679977986023355777----776641--388632787213-
Q gi|254780624|r 31 NHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVA----FRIAEA--SDNRSQIVVADI- 103 (265)
Q Consensus 31 ~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~----~~l~~~--~~~~~~v~giD~- 103 (265)
T Consensus 81 ~~~~~~~~P~~kfa-~~ta-------NqAIleA~~g--~~~vHIIDf~i~~G~QWp~Liq~LA~R~~gpp~lRIT~i~~~ 150 (371)
T pfam03514 81 YKLFYEVSPYLKFG-HFTA-------NQAILEAFEG--EERVHIIDFDIGQGLQWPSLIQALASRPGGPPHLRITGIGSP 150 (371)
T ss_pred HHHHHHHCCHHHHH-HHHH-------HHHHHHHHCC--CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 99999859899999-9999-------9999999758--971477613677764078999999519999976788222386
Q ss_pred ---CCCCCCCCCCCHHCCCCCCCCCCC----CC-CCCC-----CCCCCCCCCCCEEEEEECCCHHH----HHHHCCCCHH
Q ss_conf ---322221111000001122222222----22-2333-----45755446740366420132134----4320121000
Q gi|254780624|r 104 ---NNEMLSVGRDRAFKENLQDCITFI----EA-NAET-----LPFEANSFDACTLAFGIRNMPHI----TLVLQEIYRI 166 (265)
Q Consensus 104 ---s~~Ml~~a~~r~~~~~~~~~i~~~----~~-da~~-----lp~~d~sfD~V~~sf~l~~~~d~----~~~l~e~~Rv 166 (265)
T Consensus 151 ~~~~~~~l~~~g~rL~~fA~~l~vpFef~~v~~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~~~~L~~ir~ 230 (371)
T pfam03514 151 QFSSAEELEETGDRLAQFADSLGVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESTFLRLVKS 230 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCHHHCCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 66875899999999999999849984999750398344999993988997589972564255766665468999999997
Q ss_pred CCCCCEEEEE-ECCCCCCCHHHHH---HHHHHHCHHHHHHHHHCCCHHH-----HHHHHHHHHH------------CCCH
Q ss_conf 4852117763-0554455101123---4565311133210254288768-----6578999996------------8998
Q gi|254780624|r 167 LKCGGRLLVL-EFSEVQGPVFKKI---YDMWSFKVIPQLGRFIAGDEEP-----YQYLIESIRR------------FPNQ 225 (265)
Q Consensus 167 LKpGG~~~i~-df~~p~~~~~~~~---~~~y~~~iiP~~g~~~~~~~~~-----Y~yL~~Si~~------------f~~~ 225 (265)
T Consensus 231 L~P~vv~lvE~ea~~n~~~F~~RF~eal~yYsalF-DsLea~~~~~s~~R~~vE~~~l~~eI~niVa~eG~~R~eR~e~~ 309 (371)
T pfam03514 231 LNPKVVTLVEQEANHNSAPFLARFVEALHYYSALF-DSLEATLPRDSEERRKVERELLGREIVNVVACEGAERVERHETF 309 (371)
T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 59978999973788888307899999999998999-96321379998899999999999999999815787621238867
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999999759953799
Q gi|254780624|r 226 QDFAAVISAAGFSNVSF 242 (265)
Q Consensus 226 ~el~~~l~~aGF~~v~~ 242 (265)
T Consensus 310 ~~W~~r~~~aGF~~~~l 326 (371)
T pfam03514 310 GKWRERMRRAGFRPVPL 326 (371)
T ss_pred HHHHHHHHHCCCEECCC
T ss_conf 79999999687983676