HHsearch alignment for GI: 254780624 and conserved domain: pfam05401

>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=99.32  E-value=4.8e-13  Score=104.22  Aligned_cols=136  Identities=18%  Similarity=0.225  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHH----CCCHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             342115766761----48017999-----999852064467997798602335577777664138863278721332222
Q gi|254780624|r   38 SHRYDVMNDLMS----LGLHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML  108 (265)
Q Consensus        38 A~~YD~~N~~~S----~G~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml  108 (265)
T Consensus         3 ~~~~~ll~relaadDPW~~~s~wYE~~r~~~~l~aaLp~~r-y~~alE~GCa~G~lT~~LA~RCd---rLla~Dvs~~Av   78 (201)
T pfam05401         3 DGNYQLLNRELAADDPWRLDSNPFEQERHTQMLRLSLAQGT-IANALEVGCAAGAFTERLAPYCQ---RLTVIDVMPEAI   78 (201)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH-HHHHCCCCCCCCHHHHHHHHHHH---HHHHHCCCHHHH
T ss_conf             43788998751579997887768789999999998678343-30020435662487899999874---673213629999


Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC
Q ss_conf             11110000011222222222223334575544674036642---01321344320121000485211776305544551
Q gi|254780624|r  109 SVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG---IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP  184 (265)
Q Consensus       109 ~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~---l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~  184 (265)
T Consensus        79 ~~Ar~Rla~~---~hV~v~~~~vp~-~wP~~~FDLIV~SEVlYYL~d~a~lr~~~~~~v~~LaP~G~Lv---fgsarda  150 (201)
T pfam05401        79 ARARLRMKKW---SHISWIVSDVQQ-FSTNELFDLIVVAEVLYYLGDVAEMRGAVRNLVSMLAPDGQLV---FGSARDA  150 (201)
T ss_pred             HHHHHHHCCC---CCCEEEECCCCC-CCCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE---EECCCCC
T ss_conf             9999985579---982898256666-5998886279751477861879999999999999718996599---7304510