>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.

Probab=98.27 E-value=8.1e-07 Score=64.10 Aligned_cols=70 Identities=17% Similarity=0.307 Sum_probs=55.9 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265) T Consensus 188 ~~a~~~~~~~~~---~vlDlYcG~Gtfsl~lA~~~~---~V~GvE~~~~AV~~A~~Na~~N~i-~Nv~f~~~~~~~~ 257 (353) T pfam05958 188 EWACEVTQGSKG---DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEF 257 (353) T ss_pred HHHHHHHHCCCC---CEEEEECCCCHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCHHHH T ss_conf 999998626899---589984688888899986478---799996259999999998998699-8649997289999

HHsearch alignment for GI: 254780624 and conserved domain: pfam05958