HHsearch alignment for GI: 254780624 and conserved domain: pfam06962

>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.

Probab=97.37  E-value=7.2e-05  Score=51.54  Aligned_cols=79  Identities=18%  Similarity=0.380  Sum_probs=63.2

Q ss_pred             EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEECCCH-----------HHHHHHCCC
Q ss_conf             278721332222111100000112222222222233345--7554467403664201321-----------344320121
Q gi|254780624|r   97 QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--FEANSFDACTLAFGIRNMP-----------HITLVLQEI  163 (265)
Q Consensus        97 ~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~~d~sfD~V~~sf~l~~~~-----------d~~~~l~e~  163 (265)
T Consensus         1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLG--YLPggDk~i~T~~~tTi~Al~~a   78 (140)
T pfam06962         1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLG--YLPGGDKSITTKPDTTLEAIKKL   78 (140)
T ss_pred             CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECC--CCCCCCCCCEECCHHHHHHHHHH
T ss_conf             9579960999999999999965987568999779888986376467668999667--68899987587772099999999


Q ss_pred             CHHCCCCCEEEEEE
Q ss_conf             00048521177630
Q gi|254780624|r  164 YRILKCGGRLLVLE  177 (265)
Q Consensus       164 ~RvLKpGG~~~i~d  177 (265)
T Consensus        79 l~lL~~gG~i~i~~   92 (140)
T pfam06962        79 LELLKPGGLIILVI   92 (140)
T ss_pred             HHHHCCCCEEEEEE
T ss_conf             99636698999999