HHsearch alignment for GI: 254780624 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=99.28 E-value=2e-11 Score=93.76 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=93.8
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 9985206446799779860233557777766413886327872133222211110000011222222222223334575-
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE- 137 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~- 137 (265)
T Consensus 93 ~I~~~ldi~PG--~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~ 170 (309)
T pfam08704 93 LIIMMLELKPG--SVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDT 170 (309)
T ss_pred HHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC
T ss_conf 99998098999--9999836784299999999748886599984478999999999987498750588985200136664
Q ss_pred --CCCCCCCEEEEEECCCHHHHHHHCCCCHHCC-CCCEEEE
Q ss_conf --5446740366420132134432012100048-5211776
Q gi|254780624|r 138 --ANSFDACTLAFGIRNMPHITLVLQEIYRILK-CGGRLLV 175 (265)
Q Consensus 138 --d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLK-pGG~~~i 175 (265)
T Consensus 171 ~~~~~~D~VfL-----Dlp~PW~ai~~~~~~Lk~~Gg~l~~ 206 (309)
T pfam08704 171 EVSNKADAVFL-----DLPAPWEAIPHAAKALKVEGGRLCS 206 (309)
T ss_pred CCCCCCCEEEE-----CCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 45664358997-----5899799889999860689968999