HHsearch alignment for GI: 254780624 and conserved domain: pfam09243
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=98.78 E-value=2.6e-08 Score=73.68 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=76.6
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 97798602335577777664138863278721332222111100000112222222222233345755446740366420
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265)
T Consensus 35 P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~DLVi~sy~L 113 (275)
T pfam09243 35 PLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGAALDFEPADLVTISYVL 113 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCCCCCCCCCCEEEEECHH
T ss_conf 8757772775799999999884247689997489999999999985184345431-114310112458987889961422
Q ss_pred CCCH--HHHHHHCCCCHHCCCCCEEEEEECCCCCC
Q ss_conf 1321--34432012100048521177630554455
Q gi|254780624|r 151 RNMP--HITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265)
Q Consensus 151 ~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265)
T Consensus 114 ~El~~~~R~~~v~~LW~~~--~g~LVlVEpGtp~G 146 (275)
T pfam09243 114 DELTPASREKVIDNLWAKA--AQALVIVEPGTPAG 146 (275)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCEEEEEECCCHHH
T ss_conf 0799789999999999953--99799991898179