HHsearch alignment for GI: 254780624 and conserved domain: pfam11968
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.77 E-value=0.00014 Score=49.74 Aligned_cols=123 Identities=21% Similarity=0.307 Sum_probs=80.0
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEE
Q ss_conf 977986023355777776641388632787213322221111000001122222222222333457---55446740366
Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF---EANSFDACTLA 147 (265)
Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~---~d~sfD~V~~s 147 (265)
T Consensus 53 ~lr~LEVGALst~N~--~S~-~-~~~dv~rIDLnSq~--------------p~I--~qqDFmerPlP~~e~e~F~iISlS 112 (220)
T pfam11968 53 KLRALEVGALSTKNA--CSK-S-GLFDVTRIDLNSQE--------------PGI--LQQDFMERPLPKDESEKFDIISLS 112 (220)
T ss_pred CCEEEEECCCCCCCH--HCC-C-CEEEEEEEECCCCC--------------CCC--HHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 631775545564212--225-6-74777885258999--------------871--443244077888831141358887
Q ss_pred EEECCCHHH---HHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 420132134---43201210004852117763055445510112345653111332102542887686578999996899
Q gi|254780624|r 148 FGIRNMPHI---TLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPN 224 (265)
Q Consensus 148 f~l~~~~d~---~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~ 224 (265)
T Consensus 113 LVLNfVP~~~~RGeML~r~~~fL~~~~~~~----------------~~~lFlVLPlp-C-v-~N-----------SRY~~ 162 (220)
T pfam11968 113 LVLNFVPDPADRGEMLKRTTKFLRPPGPGS----------------PPSLFLVLPLP-C-V-TN-----------SRYMD 162 (220)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCCCC----------------CCEEEEEEEHH-H-H-HC-----------CCCCC
T ss_conf 777416987888699999999717997666----------------63268873245-6-4-04-----------40019
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 8999999997599537999
Q gi|254780624|r 225 QQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 225 ~~el~~~l~~aGF~~v~~~ 243 (265)
T Consensus 163 ~~~l~~im~slGf~~~~~k 181 (220)
T pfam11968 163 EERLQAIMSSLGFVLVKSK 181 (220)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999996795588764