RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone
biosynthesis methyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(265 letters)
>gnl|CDD|36753 KOG1540, KOG1540, KOG1540, Ubiquinone biosynthesis
methyltransferase COQ5 [Coenzyme transport and
metabolism].
Length = 296
Score = 283 bits (724), Expect = 5e-77
Identities = 133/253 (52%), Positives = 173/253 (68%), Gaps = 10/253 (3%)
Query: 13 KTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDY 72
T +GF+ V E EK+ +V+HVF V+ +YD+MND MSLG+HR WK+ V+ L P K
Sbjct: 45 CTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGM-- 102
Query: 73 RVLDVAGGTGDVAFRIAEAS-----DNRSQIVVADINNEMLSVGRDRAFKENLQDCIT-- 125
+VLDVAGGTGD+AFRI D S++ V DIN ML+VG+ RA K L+
Sbjct: 103 KVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVE 162
Query: 126 FIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPV 185
++E +AE LPF+ +SFDA T+AFGIRN+ HI L+E YR+LK GGR LEFS+V+
Sbjct: 163 WVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEP 222
Query: 186 FKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSF-TN 244
K YD +SF V+P LG IAGD + YQYL+ESIRRFP Q++FA++I AGFS+V+ N
Sbjct: 223 LKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYEN 282
Query: 245 YTNGVVALHSGWK 257
T GVVA+HSG K
Sbjct: 283 LTFGVVAIHSGIK 295
>gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 270 bits (693), Expect = 2e-73
Identities = 114/241 (47%), Positives = 165/241 (68%), Gaps = 5/241 (2%)
Query: 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDV 77
F+ V ++EKQ V VF +V+ +YD+MNDLMS GLHR W+ A+++ L + +VLDV
Sbjct: 1 FKMVAKDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKP--GDKVLDV 58
Query: 78 AGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137
A GTGD+A +A++ ++V DI+ ML V R++ K+ +Q+ + F+ +AE LPF
Sbjct: 59 ACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFP 116
Query: 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFK- 196
NSFDA T++FG+RN+ I L+E+YR+LK GGRLLVLEFS+ PV +K Y ++ FK
Sbjct: 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKY 176
Query: 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGW 256
V+P +G+ +A D E Y+YL ESIRRFP+Q++ +I AGF V + N T G+VALH G+
Sbjct: 177 VLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236
Query: 257 K 257
K
Sbjct: 237 K 237
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 256 bits (657), Expect = 3e-69
Identities = 95/232 (40%), Positives = 150/232 (64%), Gaps = 3/232 (1%)
Query: 26 KQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVA 85
K+ V VFS V+ +YD+MND++S G+HR WK+ + + ++ + LDVAGGTGD
Sbjct: 5 KEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGN--KFLDVAGGTGDWT 62
Query: 86 FRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACT 145
F +++++ + ++V DIN ML G +A +E + I F++ NAE LPFE +SFD T
Sbjct: 63 FGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYN-IEFLQGNAEELPFEDDSFDIVT 121
Query: 146 LAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFI 205
++FG+RN P VL+E +R+LK GGR++ LEFS+ + P+ + Y+++ V+P +G+
Sbjct: 122 ISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKYVMPFMGKMF 181
Query: 206 AGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257
A + YQYL ESIR FP+Q+ A++ AGF +V + + T G+ A+H G K
Sbjct: 182 AKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESLTGGIAAIHWGIK 233
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.)..
Length = 107
Score = 59.4 bits (144), Expect = 9e-10
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
RVLD+ GTG +A +A +++ DI+ L + R A L D + ++ +AE
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAE 57
Query: 133 TLPFEA-NSFDACTLAFGIR-NMPHITLVLQEIYRILKCGGRLLV 175
LP EA SFD + + + L+E R+LK GG L++
Sbjct: 58 ELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
>gnl|CDD|30846 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 47.1 bits (108), Expect = 5e-06
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 2/195 (1%)
Query: 29 MVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRI 88
+ + R + D L +V L VLD+ GTG +A +
Sbjct: 7 ELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLAL-L 65
Query: 89 AEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI-EANAETLPFEANSFDACTLA 147
A + +V D++ EML++ R RA L + +A LPFE ++ ++
Sbjct: 66 ARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVIS 125
Query: 148 FGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAG 207
+ ++ L+E+ R+LK GGRL++ + + + + + G +
Sbjct: 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILLE 185
Query: 208 DEEPYQYLIESIRRF 222
E + + +
Sbjct: 186 LEALLRLELLDLEEL 200
>gnl|CDD|39501 KOG4300, KOG4300, KOG4300, Predicted methyltransferase [General
function prediction only].
Length = 252
Score = 42.7 bits (100), Expect = 9e-05
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133
VL+V GTG F+ S + D N +M + A ++ F+ A+ E
Sbjct: 80 VLEVGCGTG-ANFKFYPWKPINSVTCL-DPNEKMEEIADKSAAEKKPLQVERFVVADGEN 137
Query: 134 LPFEAN-SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYD 191
LP A+ S+D + ++ L E+ R+L+ GGR++ +E + + +I
Sbjct: 138 LPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196
>gnl|CDD|32409 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 42.6 bits (100), Expect = 1e-04
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
RVLDV G G ++ +A + + D + + + V + A + + I + +A E
Sbjct: 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVE 116
Query: 133 TLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175
L FD T + ++P L+ +++K GG L +
Sbjct: 117 DLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159
>gnl|CDD|36483 KOG1269, KOG1269, KOG1269, SAM-dependent methyltransferases [Lipid
transport and metabolism, General function prediction
only].
Length = 364
Score = 42.3 bits (99), Expect = 1e-04
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
+VLDV G G + IA ++ +V D N + A K L + F+ A+
Sbjct: 113 KVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG 170
Query: 133 TLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFS 179
+PFE N+FD + + P + V EIYR+LK GG +V E+
Sbjct: 171 KMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217
>gnl|CDD|32411 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 42.2 bits (99), Expect = 2e-04
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 32/178 (17%)
Query: 22 PEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWK--EAMVTNLNP------RKSKDY- 72
++ + YD+ ND L L A + + R D
Sbjct: 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLI 64
Query: 73 ----------RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD 122
+LD+ G G +A AE +V ++ E L+ R L+D
Sbjct: 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLED 122
Query: 123 CITFIEANAETLPFEANSFDACTL-----AFGIRNMPHITLVLQEIYRILKCGGRLLV 175
+ + FD G N +++Y +LK GGR+L+
Sbjct: 123 NVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDF---FKKVYALLKPGGRMLL 174
>gnl|CDD|36876 KOG1663, KOG1663, KOG1663, O-methyltransferase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 237
Score = 39.1 bits (91), Expect = 0.001
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA- 131
R L++ TG A +A A ++V +I+ + +G + + ITFIE A
Sbjct: 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135
Query: 132 ETLP-----FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL---VLEFSEVQG 183
E+L E+ +FD AF + + + + + R+L+ GG ++ VL V
Sbjct: 136 ESLDELLADGESGTFD---FAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVAD 192
Query: 184 PVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLI 216
P S + L + +A D Y L+
Sbjct: 193 PDVNTPVRGRSIREALNLNKKLARDPRVYISLL 225
>gnl|CDD|32589 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 37.9 bits (88), Expect = 0.003
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE 118
++P RVL+ G+G + +A A + +I + R+ +
Sbjct: 87 VARLGISPGS----RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF 142
Query: 119 NLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175
L D +T + + DA L ++P VL+ + LK GG ++V
Sbjct: 143 GLGDRVTLKLGDV-REGIDEEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193
>gnl|CDD|36754 KOG1541, KOG1541, KOG1541, Predicted protein carboxyl methylase
[General function prediction only].
Length = 270
Score = 38.1 bits (88), Expect = 0.003
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133
+LD+ G+G + SD+ Q + DI+ ML +R + +L C E
Sbjct: 54 ILDIGCGSGLSG---SVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDM-----GEG 105
Query: 134 LPFEANSFDACTLAFGIR---------NMPHITLV--LQEIYRILKCGGRLLVLEF 178
LPF +FD ++ ++P L+ +Y LK G R VL+F
Sbjct: 106 LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGAR-AVLQF 160
>gnl|CDD|30493 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 37.3 bits (86), Expect = 0.004
Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVA-DINNEMLSVGRDRAFKEN 119
L+P+ + RVLD+ G +AE +N IVVA D++ + L R+ +
Sbjct: 149 ALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG 206
Query: 120 LQDCITFIE--ANAETLPFEANSFDA------CTLAFGIRNMPHITL------------- 158
+++ I + L FD C+ IR P +
Sbjct: 207 VRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKL 266
Query: 159 ---VLQEIYRILKCGGRLL-------VLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGD 208
+L ++LK GG L+ E EV ++ D F++ P +
Sbjct: 267 QKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPD---FELEPVRLPWGPLF 323
Query: 209 EEPYQYLIESIRRFPNQQD----FAAVI 232
E L ++ R +P+ F A +
Sbjct: 324 EGLGSELGKTRRLYPHVHGTDGFFIAKL 351
>gnl|CDD|38220 KOG3010, KOG3010, KOG3010, Methyltransferase [General function
prediction only].
Length = 261
Score = 36.8 bits (85), Expect = 0.006
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCIT---FIEAN 130
DV G G A IAE ++ D++ ML V + + C T
Sbjct: 37 AWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKK---HPPVTYCHTPSTMSSDE 90
Query: 131 AETLPFEANSFDACTLAFGIRNMPH---ITLVLQEIYRILKCGGRLLV 175
L S D T A + H + +E YR+L+ G L+
Sbjct: 91 MVDLLGGEESVDLITAAQAV----HWFDLERFYKEAYRVLRKDGGLIA 134
>gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 35.7 bits (82), Expect = 0.012
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 32/179 (17%)
Query: 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRA------------ 115
D R+LD+ G+G +A +A+ + ++ DI+ + L++ R+ A
Sbjct: 108 LQLDKRILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQ 166
Query: 116 --FKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLV------------LQ 161
E L+ I +N +P E D L +R P + LV L
Sbjct: 167 SDLFEPLRGKFDLIVSNPPYIPAE----DPELLPEVVRYEPLLALVGGGDGLEVYRRILG 222
Query: 162 EIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIR 220
E ILK GG +L+LE QG K +++ F I + + + G + + S R
Sbjct: 223 EAPDILKPGG-VLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKLRSER 280
>gnl|CDD|32445 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 35.7 bits (82), Expect = 0.013
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA 129
K VLDV G+G +A IA A ++V DI+ + + R+ A ++ +
Sbjct: 162 KGKTVLDVGCGSGILA--IAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219
Query: 130 NAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKI 189
+P FD + I + L +I R+LK GGRL++ E Q +
Sbjct: 220 LLLEVPENGP-FDV--IVANILAEVLVEL-APDIKRLLKPGGRLILSGILEDQAESVAEA 275
Query: 190 YDMWSFKVIPQLGR 203
Y+ F+V+ L R
Sbjct: 276 YEQAGFEVVEVLER 289
>gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 34.0 bits (78), Expect = 0.037
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 64 LNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDC 123
L PR R+ D+ GTG + A + +++ + + E L + A + + D
Sbjct: 30 LRPRP--GDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV-DN 85
Query: 124 ITFIEANA-ETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175
+ +E +A E LP + S DA F I +I +L+ + LK GGRL+
Sbjct: 86 LEVVEGDAPEALP-DLPSPDA---IF-IGGGGNIEEILEAAWERLKPGGRLVA 133
>gnl|CDD|30465 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA
replication, recombination, and repair].
Length = 381
Score = 34.1 bits (78), Expect = 0.038
Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 34/175 (19%)
Query: 51 GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSV 110
GL+R + + R + A A I +DI+ +
Sbjct: 219 GLNRRFGFEFWDWFDKDLWDKLR---------EEAEERARRGKELPIIYGSDIDPRHIEG 269
Query: 111 GRDRAFKENLQDCITFIEANAETLPFEANSFDA--CTLAFGIRNMPHITLVLQEIYRILK 168
+ A + D I F +A+A L + +G R
Sbjct: 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER----------------- 312
Query: 169 CGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFP 223
G LV + G K++ WS V F ++ + + + ++
Sbjct: 313 LGSEALVAKLYREFGRTLKRLLAGWSRYV------FTTSEDLLFCLGLRADKKRK 361
>gnl|CDD|36712 KOG1499, KOG1499, KOG1499, Protein arginine N-methyltransferase
PRMT1 and related enzymes [Posttranslational
modification, protein turnover, chaperones,
Transcription, Signal transduction mechanisms].
Length = 346
Score = 34.1 bits (78), Expect = 0.042
Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 28/138 (20%)
Query: 2 TKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMV 61
T SD+ SY + EE ++ V R + + L
Sbjct: 15 TPKDMTSDDYYFDSYAHFGIHEEMLKDSV-----RTLAYRNAI-------LQ-------- 54
Query: 62 TNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ 121
N KD VLDV GTG ++ A+A + V A + + R L+
Sbjct: 55 ---NKHLFKDKTVLDVGCGTGILSMFAAKAGARK---VYAVEASSIADFARKIVKDNGLE 108
Query: 122 DCITFIEANAET--LPFE 137
D IT I+ E LP E
Sbjct: 109 DVITVIKGKVEDIELPVE 126
>gnl|CDD|36713 KOG1500, KOG1500, KOG1500, Protein arginine N-methyltransferase
CARM1 [Posttranslational modification, protein turnover,
chaperones, Transcription].
Length = 517
Score = 33.2 bits (75), Expect = 0.069
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDV 77
F + EE + + +S + ++M D + G ++ A++ N + +D VLDV
Sbjct: 130 FSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTGT---YQRAILENHS--DFQDKIVLDV 184
Query: 78 AGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE--TLP 135
G+G ++F A+A + V A +EM R NL D IT I E LP
Sbjct: 185 GAGSGILSFFAAQAGAKKVYAVEA---SEMAQYARKLVASNNLADRITVIPGKIEDIELP 241
Query: 136 FEAN 139
+ +
Sbjct: 242 EKVD 245
>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate
dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an
enzyme of the zinc-dependent alcohol dehydrogenase-like
family of medium chain dehydrogenases/reductases
catalyzes the conversion of 6-hydroxyhexanoate and
NAD(+) to 6-oxohexanoate + NADH and H+.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding
domains, at the active site, and coenzyme binding
induces a conformational closing of this cleft. Coenzyme
binding typically precedes and contributes to substrate
binding. In human ADH catalysis, the zinc ion helps
coordinate the alcohol, followed by deprotonation of a
histidine, the ribose of NAD, a serine, then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 350
Score = 33.0 bits (76), Expect = 0.091
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR 114
V L P + + V+ AGG G +A + +A + I+V DI+ L +
Sbjct: 167 VKKLMPLVADEPVVIIGAGGLGLMALALLKALGPAN-IIVVDIDEAKLEAAKAA 219
>gnl|CDD|33879 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 32.2 bits (73), Expect = 0.15
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 67 RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCIT 125
R S R+L++ G A +A A + ++ + + E + R E + D I
Sbjct: 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAR-ENLAEAGVDDRIE 114
Query: 126 FIEAN--AETL-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175
+ + L SFD + + P L+ +L+ GG ++
Sbjct: 115 LLLGGDALDVLSRLLDGSFDLVFIDADKADYPEY---LERALPLLRPGGLIVA 164
>gnl|CDD|32591 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 31.4 bits (71), Expect = 0.24
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 56 WKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRA 115
++ + + + RVLD G G A E ++ + + +L + +
Sbjct: 120 LEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNP 177
Query: 116 FKENLQD-CITFIEANAETL--PFEANSFDACTLAFGIRNMPHITL--------VLQEIY 164
+ L + I I +A + F+ SFDA I + P +L +E+Y
Sbjct: 178 WSRELFEIAIKIILGDAYEVVKDFDDESFDAI-----IHDPPRFSLAGELYSEEFYRELY 232
Query: 165 RILKCGGRL 173
RILK GGRL
Sbjct: 233 RILKRGGRL 241
>gnl|CDD|110191 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This
domain is probably a methylase. It is associated with
the THUMP domain that also occurs with RNA modification
domains.
Length = 171
Score = 31.1 bits (71), Expect = 0.28
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 101 ADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFD--ACTLAFGIR 151
+DI+ M+ R A + D I F++A+A LP S D +GIR
Sbjct: 58 SDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSVDTIVTDPPYGIR 110
>gnl|CDD|38151 KOG2940, KOG2940, KOG2940, Predicted methyltransferase [General
function prediction only].
Length = 325
Score = 30.8 bits (69), Expect = 0.39
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 19/165 (11%)
Query: 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133
D+ G V + + ++++ D + +M+ RD ++ ++ + E
Sbjct: 76 AFDIGCSLGAVKRHLR--GEGVEKLIMMDTSYDMIKSCRD---AQDPSIETSYFVGDEEF 130
Query: 134 LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMW 193
L F+ NS D + + + + + LK G + +Y++
Sbjct: 131 LDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGG------DTLYELR 184
Query: 194 SFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFS 238
+ +L R G P+ I F +D +++ AGFS
Sbjct: 185 CSLQLAELER--EGGISPH------ISPFTQVRDIGNLLTRAGFS 221
>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 30.6 bits (69), Expect = 0.48
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR 112
R+ +A++ K R+LD+ G G + +A+ ++ ++IV +I E + +
Sbjct: 27 FRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQ 85
Query: 113 DRAFKEN-LQDCITFIEANAETL--PFEANSFDA 143
R N L++ I IEA+ + SFD
Sbjct: 86 -RNVALNPLEERIQVIEADIKEFLKALVFASFDL 118
>gnl|CDD|37563 KOG2352, KOG2352, KOG2352, Predicted spermine/spermidine synthase
[Amino acid transport and metabolism].
Length = 482
Score = 29.5 bits (66), Expect = 0.96
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 124 ITFIEANAETLPFEANSFDACTLAFG-----------IRNMPHITLVLQEIYRILKCGGR 172
+ +E + + L FE SFD + G + N H++ +L E+ R+L GG+
Sbjct: 98 MQMVEMDMDQLVFEDESFDI-VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156
Query: 173 LLVLEFSEVQGPVFKKIYDMWSFKV 197
+ + +V P +K W F
Sbjct: 157 YISVTLVQVV-PQGRKP--EWLFGS 178
>gnl|CDD|36417 KOG1203, KOG1203, KOG1203, Predicted dehydrogenase [Carbohydrate
transport and metabolism].
Length = 411
Score = 29.2 bits (65), Expect = 1.2
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAF 116
EA V+ N K VL V G TG V RI + R V A + +E + F
Sbjct: 65 SEAEVSPPNNNSKKPTTVL-VVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVF 123
Query: 117 KENLQDC-ITFIEANAETLPFEA 138
+L + A + +
Sbjct: 124 FVDLGLQNVEADVVTAIDILKKL 146
>gnl|CDD|36612 KOG1398, KOG1398, KOG1398, Uncharacterized conserved protein
[Function unknown].
Length = 460
Score = 29.2 bits (65), Expect = 1.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 200 QLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257
QLG F+ ++ ++R+ N+ D I A G +++S Y +AL+ WK
Sbjct: 301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFYKKSTIALYVLWK 358
>gnl|CDD|37035 KOG1824, KOG1824, KOG1824, TATA-binding protein-interacting protein
[General function prediction only].
Length = 1233
Score = 29.2 bits (65), Expect = 1.4
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 20 EVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAG 79
+V E++ + +V ++ S + + + D+ S+GL + ++ NL P S
Sbjct: 77 KVKEDQLETIVENLCSNMLSGKEQLRDISSIGL-----KTVIANLPPSSSSFLAATVCKR 131
Query: 80 GTGDVAFRI-AEASDNRSQIVVADINNEMLS 109
T + I + + + V DI ++LS
Sbjct: 132 ITPKLKQAISKQEDVSAIKCEVLDILADVLS 162
>gnl|CDD|33091 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate
transport and metabolism].
Length = 889
Score = 28.8 bits (64), Expect = 1.4
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 7 DSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMS---LGLHRFWKEAMVTN 63
D DN + R + + + F + H D + ++ L L R E
Sbjct: 737 DPDNRRPVDFATRA---QALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHPELFAGG 793
Query: 64 LNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADI 103
DY L AG D A D++ I VA
Sbjct: 794 -------DYLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826
>gnl|CDD|32516 COG2369, COG2369, Uncharacterized protein, homolog of phage Mu
protein gp30 [Function unknown].
Length = 432
Score = 28.9 bits (64), Expect = 1.6
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 62 TNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE 118
++ DY V A GT R N+ + NNE+L R AF+E
Sbjct: 300 KSMKKGIGWDYNVGSAAFGTDMAVIRNLILVKNKRYQEIQQHNNELL---RQFAFEE 353
>gnl|CDD|35434 KOG0213, KOG0213, KOG0213, Splicing factor 3b, subunit 1 [RNA
processing and modification].
Length = 1172
Score = 28.5 bits (63), Expect = 1.9
Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 17/163 (10%)
Query: 22 PEEEKQNMVNHVFSRVSHRYDV-----MNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLD 76
P+EE + +V V + V D++ FW M + K ++
Sbjct: 648 PDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVE 707
Query: 77 VAGGTGD---VAFRIAEASDNRSQ---IVVADINNEMLSVGR---DRAFKENLQD--CIT 125
+A G V+ + + D Q +V ++ + +G D +E L D
Sbjct: 708 IAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYA 767
Query: 126 FIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILK 168
F E E F A G R P++ + I L
Sbjct: 768 FQEQTTED-SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809
>gnl|CDD|73300 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions as a Na+/H+
antiporter..
Length = 169
Score = 28.1 bits (63), Expect = 2.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVV 100
DY V+D+ GTGD +A++ ++V
Sbjct: 69 DYLVIDMPPGTGDEHLTLAQSLPIDGAVIV 98
>gnl|CDD|31243 COG1041, COG1041, Predicted DNA modification methylase [DNA
replication, recombination, and repair].
Length = 347
Score = 28.0 bits (62), Expect = 2.9
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
VLD GTG + EA ++++ +DI+ M+ + ++D +A
Sbjct: 200 LVLDPFCGTGGILI---EAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256
Query: 133 TLPFEANSFDA--CTLAFGIRNMPHITLV-------LQEIYRILKCGGRL 173
LP NS DA +G + L+ +LK GGR+
Sbjct: 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRI 306
>gnl|CDD|36485 KOG1271, KOG1271, KOG1271, Methyltransferases [General function
prediction only].
Length = 227
Score = 27.6 bits (61), Expect = 3.6
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
RVLD+ G G + F++A+ +S++ D + + + + ++ A ++ + I F + +
Sbjct: 70 RVLDLGTGNGHLLFQLAK-EGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDIT 128
Query: 133 TLPFEANSFD 142
F + FD
Sbjct: 129 DPDFLSGQFD 138
>gnl|CDD|147365 pfam05148, Methyltransf_8, Hypothetical methyltransferase. This
family consists of several uncharacterized eukaryotic
proteins which are related to methyltransferases
pfam01209.
Length = 214
Score = 27.1 bits (60), Expect = 4.8
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 134 LPFEANSFD--ACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE--VQGPVFKKI 189
+P E S D L+ N I L+E RILK GG L + E +F++
Sbjct: 111 VPLEDESVDVAVFCLSLMGTN---IADFLKEANRILKNGGLLKIAEVRSRFPSVGLFERA 167
Query: 190 YDMWSFKV 197
+ F+V
Sbjct: 168 FTKLGFEV 175
>gnl|CDD|144476 pfam00891, Methyltransf_2, O-methyltransferase. This family
includes a range of O-methyltransferases. These enzymes
utilize S-adenosyl methionine.
Length = 239
Score = 26.8 bits (60), Expect = 5.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 73 RVLDVAGGTGDVAFRIAEA 91
++DV GGTG +A I A
Sbjct: 104 SLVDVGGGTGALAAAIVRA 122
>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 26.7 bits (59), Expect = 6.0
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEA-SDNRSQIVVADINNEMLSVGRDRA 115
+EA+ L P + + RVLD+ G+G + EA S +++V + + + + + ++
Sbjct: 30 REALFNILAPDEIEGARVLDLFAGSGALGL---EALSRGAARVVFVEKDRKAVKILKENL 86
Query: 116 FKENLQDCITFIEANAETLPF---EANSFDACTL----AFGIRNMPHITLVLQEIYRILK 168
L+ + +A FD L A G+ + + L+L E LK
Sbjct: 87 KALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLD-KELALLLLEENGWLK 145
Query: 169 CGGRLLVLE 177
G L+V+E
Sbjct: 146 PGA-LIVVE 153
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase
superfamily (putative class 13 nitrilases). The
nitrilase superfamily is comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13).
Class 13 represents proteins that at the time were
difficult to place in a distinct similarity group; this
subgroup represents either a new class or one that was
included previously in class 13. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 258
Score = 26.9 bits (60), Expect = 6.5
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 32/91 (35%)
Query: 31 NHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAE 90
N VF +R DL+ G + LNPR G V +AE
Sbjct: 191 NTVFVAAVNRVGNEGDLVLFGKSKI--------LNPR--------------GQV---LAE 225
Query: 91 ASDNRSQIVVADI-------NNEMLSVGRDR 114
AS+ +I+ A+I L +DR
Sbjct: 226 ASEEAEEILYAEIDLDAIADYRMTLPYLKDR 256
>gnl|CDD|58070 cd03704, eRF3c_III, This family represents eEF1alpha-like
C-terminal region of eRF3 homologous to the domain III
of EF-Tu. eRF3 is a GTPase, which enhances the
termination efficiency by stimulating the eRF1 activity
in a GTP-dependent manner. The C-terminal region is
responsible for translation termination activity and is
essential for viability. Saccharomyces cerevisiae eRF3
(Sup35p) is a translation termination factor which is
divided into three regions N, M and a C-terminal
eEF1a-like region essential for translation termination.
Sup35NM is a non-pathogenic prion-like protein with
the property of aggregating into polymer-like fibrils..
Length = 108
Score = 26.7 bits (59), Expect = 6.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 195 FKVIPQLGRFIAGDE 209
F+ PQLGRF DE
Sbjct: 82 FEDFPQLGRFTLRDE 96
>gnl|CDD|38255 KOG3045, KOG3045, KOG3045, Predicted RNA methylase involved in rRNA
processing [RNA processing and modification].
Length = 325
Score = 26.5 bits (58), Expect = 8.0
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 127 IEANAETLPFEANSFD--ACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE----FSE 180
I + +P E S D L+ N + ++E RILK GG L + E FS+
Sbjct: 215 IACDMRNVPLEDESVDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEVKSRFSD 271
Query: 181 VQG 183
V+G
Sbjct: 272 VKG 274
>gnl|CDD|36254 KOG1036, KOG1036, KOG1036, Mitotic spindle checkpoint protein BUB3,
WD repeat superfamily [Cell cycle control, cell
division, chromosome partitioning].
Length = 323
Score = 26.4 bits (58), Expect = 8.4
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 189 IYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAA 230
IYD + L E +Y + PN + +
Sbjct: 159 IYD------LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV 194
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,230,466
Number of extensions: 168308
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 47
Length of query: 265
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,275,709
Effective search space: 739697657
Effective search space used: 739697657
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)