BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone
biosynthesis methyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (265 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780624|ref|YP_003065037.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 265

 Score =  554 bits (1428), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
           MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM
Sbjct: 1   MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60

Query: 61  VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
           VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL
Sbjct: 61  VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120

Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
           QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE
Sbjct: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180

Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
           VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV
Sbjct: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240

Query: 241 SFTNYTNGVVALHSGWKCENIGSVV 265
           SFTNYTNGVVALHSGWKCENIGSVV
Sbjct: 241 SFTNYTNGVVALHSGWKCENIGSVV 265


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 559

 Score = 30.8 bits (68), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 144 CTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIP 199
           C ++F   ++P + LV  +I  I+K    L+ +  +      +  ++D+WSF  +P
Sbjct: 39  CGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVP 94


>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 412

 Score = 30.0 bits (66), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 36  RVSHRYDVMNDLMSLGLH----RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEA 91
           R  HR + ++  ++ G H      W + + TN+    ++ Y   D+   TG    R  E 
Sbjct: 156 RKLHRANGIDTNITTGYHVIEFLLWGQDLKTNVREPGNRPYTDFDIGNCTGGHCRRRVEY 215

Query: 92  SDNRSQIVVADINNEMLSVGRD-RAFKENLQD 122
               S+I+V+D+   M + G D +A K+ ++D
Sbjct: 216 LKVVSKILVSDLEEMMKAWGPDGQATKDLMKD 247


>gi|254780582|ref|YP_003064995.1| Methyltransferase type 11 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 242

 Score = 28.9 bits (63), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 134 LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176
           LP   +S D   +   +       L+L EI+R+L  GGR++V+
Sbjct: 89  LPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV 131


>gi|254780946|ref|YP_003065359.1| hypothetical protein CLIBASIA_04225 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 98

 Score = 23.5 bits (49), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 181 VQGPVFKKIYDMWS 194
           ++ P+FKKIYD +S
Sbjct: 72  LRTPIFKKIYDYYS 85


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 22.7 bits (47), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 9   DNNMKTSYGFREVPEEEKQNMVNHVFSRV 37
           +NNMK ++ F E+ ++ K+   +H+   +
Sbjct: 166 NNNMKDAFRFLELAQKSKETADSHIIEAI 194


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,151
Number of Sequences: 1233
Number of extensions: 6588
Number of successful extensions: 18
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 265
length of database: 328,796
effective HSP length: 72
effective length of query: 193
effective length of database: 240,020
effective search space: 46323860
effective search space used: 46323860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)