HHsearch alignment for GI: 254780625 and conserved domain: COG0266
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=578.00 Aligned_cols=273 Identities=47% Similarity=0.804 Sum_probs=261.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 96764367889889998679778899964833265787789997289889999605308999503553100152553279
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSF 80 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~ 80 (289)
T Consensus 1 MPELPEVetv~rgL~~~~~G~~I~~v~v~~p~l~~~~~~~~~~~L~G~~I~~v~rRgKyLl~~l~g~~~Li~HLgM~G~~ 80 (273)
T COG0266 1 MPELPEVETVRRGLEPHLVGKTITRVEVRRPRLRWPDSEEFAERLTGQRITSVERRGKYLLIELSGDLTLISHLGMSGSL 80 (273)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEECCCCHHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEE
T ss_conf 99874779898766887579878899953875113677778965589698367512125999917994899966764689
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98147854224587663389997068876048999815876641001455301005323565553322111067888742
Q gi|254780625|r 81 IIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQF 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l 160 (289)
T Consensus 81 ~~~~~~~~----~~kH~hv~~~~~~g~----~~l~y~D~R~FG~~~~~~~~~-~~~~~l~~LGpePl~~~f~~~~l~~~l 151 (273)
T COG0266 81 RLEARGEP----DEKHDHVDFVLSDGK----DVLRYNDPRRFGTMLLIEDLE-EVHPVLAKLGPEPLSDDFDPEYLAEKL 151 (273)
T ss_pred EEECCCCC----CCCCEEEEEEECCCC----EEEEEECCCCCCEEEEECCCC-CCCHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 98517888----886308999975993----599986387674899945665-432779865999885436999999987
Q ss_pred HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01454210011126543564136899999987178778312222001015899999999878876765421887553111
Q gi|254780625|r 161 HKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240 (289)
Q Consensus 161 ~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~~ 240 (289)
T Consensus 152 ~~~~~~IK~~LLDQ~vvaGvGNIYa~E~Lf~agI~P~~~a~~l~~~~------~~~l~~~i~~vl~~ai~~gGtt~r~~~ 225 (273)
T COG0266 152 AKKKRRIKTALLDQKVVAGVGNIYADEILFRAGIHPARPAGDLSLAQ------LALLHEAIKDVLADAIERGGTTLRDFV 225 (273)
T ss_pred HCCCCCHHHHHHCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 32764167776407703034178888899873798546703027899------999999999999999981898024324
Q ss_pred CCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 6778778741331665738771078778878999987812063877679
Q gi|254780625|r 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 241 ~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
T Consensus 226 ~~~g~~G~fq~~l~VYgR~GepC-~~CGt~I~k~~~~gR~t~~CP~CQ~ 273 (273)
T COG0266 226 NADGKPGYFQQELKVYGRAGEPC-RRCGTPIEKIKLGGRSTFYCPVCQK 273 (273)
T ss_pred CCCCCCCCCCEEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 56898774312689855789988-7458876799986876776878789