HHsearch alignment for GI: 254780625 and conserved domain: COG1293

>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].
Probab=97.46  E-value=0.0024  Score=41.55  Aligned_cols=71  Identities=15%  Similarity=0.219  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33221110678887420145421001112654356413689999998717877831222200101589999999987887
Q gi|254780625|r  145 EPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKV  224 (289)
Q Consensus       145 D~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~v  224 (289)
T Consensus       168 ~p~~--~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~a~el~~rag~~~~~~~~~~~~~~------~~~v~~~~~~~  236 (564)
T COG1293         168 NPYE--QSEEDFKELQLNSGADIVR---LLARFLGLGGLLAEELLSRAGLDKKVPAKDLFEEE------IKKVREALEEL  236 (564)
T ss_pred             CHHH--CCHHHHHHHHHCCCHHHHH---HHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH------HHHHHHHHHHH
T ss_conf             9222--6766899986225247778---87875386577899999861787577513440889------99998766665


Q ss_pred             HH
Q ss_conf             67
Q gi|254780625|r  225 LI  226 (289)
Q Consensus       225 l~  226 (289)
T Consensus       237 ~~  238 (564)
T COG1293         237 LN  238 (564)
T ss_pred             HH
T ss_conf             30