HHsearch alignment for GI: 254780625 and conserved domain: COG1293
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].
Probab=97.46 E-value=0.0024 Score=41.55 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221110678887420145421001112654356413689999998717877831222200101589999999987887
Q gi|254780625|r 145 EPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKV 224 (289)
Q Consensus 145 D~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~v 224 (289)
T Consensus 168 ~p~~--~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~a~el~~rag~~~~~~~~~~~~~~------~~~v~~~~~~~ 236 (564)
T COG1293 168 NPYE--QSEEDFKELQLNSGADIVR---LLARFLGLGGLLAEELLSRAGLDKKVPAKDLFEEE------IKKVREALEEL 236 (564)
T ss_pred CHHH--CCHHHHHHHHHCCCHHHHH---HHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH------HHHHHHHHHHH
T ss_conf 9222--6766899986225247778---87875386577899999861787577513440889------99998766665
Q ss_pred HH
Q ss_conf 67
Q gi|254780625|r 225 LI 226 (289)
Q Consensus 225 l~ 226 (289)
T Consensus 237 ~~ 238 (564)
T COG1293 237 LN 238 (564)
T ss_pred HH
T ss_conf 30