HHsearch alignment for GI: 254780625 and conserved domain: PRK01103
>PRK01103 formamidopyrimidine-DNA glycosylase; Validated.
Probab=100.00 E-value=0 Score=586.88 Aligned_cols=272 Identities=45% Similarity=0.797 Sum_probs=259.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 96764367889889998679778899964833265787789997289889999605308999503553100152553279
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSF 80 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~ 80 (289)
T Consensus 1 MPElPEVe~~~~~l~~~~~g~~I~~v~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~-~l~~HlgMtG~~ 79 (273)
T PRK01103 1 MPELPEVETVRRGLEPHVVGKTIERVEVRNPKLRWPVPEDFAERLSGQTILAVGRRGKYLLLDLDDG-TLISHLGMSGSL 79 (273)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCEEEEEECCCC-EEEEEEECCEEE
T ss_conf 9865899999999999848999989998985322788588997748999987871303999981698-289987323379
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98147854224587663389997068876048999815876641001455301005323565553322111067888742
Q gi|254780625|r 81 IIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQF 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l 160 (289)
T Consensus 80 ~~~~~~~----~~~k~~~l~l~~~~g~-----~l~f~D~R~fG~i~~~~~~~~~~~~~l~~lGpD~L~~~~~~~~~~~~l 150 (273)
T PRK01103 80 RVLPGET----PPEKHDHVDFVLDDGT-----VLRYNDPRRFGAMLLAEEGDLHAHPLLAKLGPEPLSDAFDGEYLAAKL 150 (273)
T ss_pred EEECCCC----CCCCEEEEEEEECCCC-----EEEEECCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 9955899----9886328999958995-----899973775317999967750004078766998465557999999876
Q ss_pred HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01454210011126543564136899999987178778312222001015899999999878876765421887553111
Q gi|254780625|r 161 HKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240 (289)
Q Consensus 161 ~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~~ 240 (289)
T Consensus 151 ~~~~~~Ik~~LlDQ~~iaGiGNiyadEiLf~a~IhP~~~~~~Ls~~e------~~~L~~~~~~vl~~ai~~~G~t~~d~~ 224 (273)
T PRK01103 151 RKKKTAIKPALLDQTIVVGVGNIYADEALFRAGIHPERPAGSLSKAR------AERLVEAIKAVLAEAIEQGGTTLRDYV 224 (273)
T ss_pred HCCCCHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCCCHHCCCCHHH------HHHHHHHHHHHHHHHHHCCCCCCHHCC
T ss_conf 43654266762258846035398999999876487135001179999------999999999999999981897402200
Q ss_pred CCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 6778778741331665738771078778878999987812063877679
Q gi|254780625|r 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 241 ~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
T Consensus 225 ~~~g~~G~~~~~~~Vy~r~g~~C-~~Cg~~I~~~~~~gR~t~~CP~CQk 272 (273)
T PRK01103 225 NADGEPGYFQQSLQVYGREGEPC-RRCGTPIEKIKQGGRSTFFCPKCQK 272 (273)
T ss_pred CCCCCCCCCCEEEEECCCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 66888675330578808898948-9999967899988971199957618