HHsearch alignment of GI: 254780625 and MMDB domain: 1k82_A_1-128
>1k82_A (A:1-128) Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli}
Probab=99.95 E-value=6.9e-27 Score=192.37 Aligned_cols=128 Identities=35% Similarity=0.495 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289)
Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289)
||||||++++++|++.++|++|+.|++.+++... .++++.+.|.|++|.+|+|+||||++.||++ +|++||||+|+|.
T Consensus 1 PELPEVe~~~~~L~~~l~G~~i~~v~~~~~~~~~-~~~~~~~~L~g~~i~~v~r~GK~l~~~~~~~-~l~~Hl~M~G~~~ 78 (128)
T 1k82_A 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRW-PVSEEIYRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGSLR 78 (128)
T ss_dssp CCHHHHHHHHHHHHHHHBTCEEEEEEESCCBSSS-BCCHHHHHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-CCCHHHHHHCCCEEEEEEEEEEEEEEECCCC-CEEEEECCCCEEE
T ss_conf 9737999999999997489999899989887468-7985589837997889975369999971588-2788874664067
Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC
Q ss_conf 8147854224587663389997068876048999815876641001455301005323565
Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l 142 (289)
+...+. .+++|.|+.|.|+++. .+.|.|+|+||+++++++.+... .+++|
T Consensus 79 ~~~~~~----~~~k~~~~~l~~~~g~-----~l~f~d~R~fg~~~l~~~~~~~~--~l~~L 128 (128)
T 1k82_A 79 ILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRRFGAWLWTKELEGHN--VLTHL 128 (128)
T ss_dssp EESSSC----CCCTTCCEEEEETTSC-----EEEEECSSCCCEEEEESCSSSST--TTTTC
T ss_pred EEECCC----CCCCCCEEEEEECCCC-----EEEEEECCCEEEEEECCCHHHHH--HHHHC
T ss_conf 774347----9986766999947997-----89998435116798348445505--88754