HHsearch alignment of GI: 254780625 and MMDB domain: 2zbk_B_229-310

>2zbk_B (B:229-310) Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}

Probab=98.23  E-value=2e-06  Score=60.90  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=58.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55332211106788874201454210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r  143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ  222 (289)
Q Consensus       143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~  222 (289)
                      .|-|..  .+...+...+...-..-|.+...++.|.|||+-+|++||..++|+|..++++|+++|      +.+|.++++
T Consensus         2 ~php~g--vd~~~~~ri~~~~~~~~k~i~~aLt~i~GIG~~~A~~I~~~~gi~~~~~~~~Lt~~q------i~~L~~~~~   73 (82)
T 2zbk_B            2 KPHPYG--VDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRLVETFK   73 (82)
T ss_dssp             CCCGGG--CCHHHHHHHHTTCSSCCBHHHHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHH------HHHHHHHHH
T ss_pred             CCCCCC--CHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHH------HHHHHCCCC
T ss_conf             258754--426777887750232101334551576467608777666552366334723336788------876411010


Q ss_pred             H
Q ss_conf             8
Q gi|254780625|r  223 K  223 (289)
Q Consensus       223 ~  223 (289)
                      .
T Consensus        74 ~   74 (82)
T 2zbk_B           74 K   74 (82)
T ss_dssp             H
T ss_pred             C
T ss_conf             1