HHsearch results for GI: 254780625 and protein with PDBid: 1k82_A
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=100.00 E-value=0 Score=525.48 Aligned_cols=268 Identities=39% Similarity=0.665 Sum_probs=248.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799
Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289)
Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289)
|||||||+++++|++.++|++|++|.+.+++++.+.++. .+.|.|++|++|.|+||+|+++|+++ +|++||||+|+|+
T Consensus 1 PElPEv~~~~~~l~~~l~Gk~I~~v~~~~~~~~~~~~~~-~~~l~g~~i~~v~r~GK~l~~~~~~~-~l~~HlgM~G~~~ 78 (268)
T 1k82_A 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEE-IYRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGSLR 78 (268)
T ss_dssp CCHHHHHHHHHHHHHHHBTCEEEEEEESCCBSSSBCCHH-HHHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHH-HHHHCCCEEEEEEEEEEEEEEECCCC-CEEEEECCCCEEE
T ss_conf 973899999999999848999989998998625878855-89817998778984069999980588-3788632551467
Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 81478542245876633899970688760489998158766410014553010053235655533221110678887420
Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFH 161 (289)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l~ 161 (289)
+..... +.+++.++.+.++++. .++|.|+|+||.+.+.+.. +.++.++++|||||+++|+.++|.+.+.
T Consensus 79 ~~~~~~----~~~~~~~~~~~~~~~~-----~l~~~d~r~~g~~~~~~~~--~~~~~~~~lgpD~l~~~~~~~~~~~~~~ 147 (268)
T 1k82_A 79 ILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRRFGAWLWTKEL--EGHNVLTHLGPEPLSDDFNGEYLHQKCA 147 (268)
T ss_dssp EESSSC----CCCTTCCEEEEETTSC-----EEEEECSSCCCEEEEESCS--SSSTTTTTCCCCTTSTTSCHHHHHHHHT
T ss_pred EEECCC----CCCCCCEEEEEECCCC-----EEEEEECCCEEEEEECCCH--HHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 740347----9987656999957997-----8999963610689944844--5413887359897971049999999860
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 14542100111265435641368999999871787783122220010158999999998788767654218875531116
Q gi|254780625|r 162 KKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVH 241 (289)
Q Consensus 162 ~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~~~ 241 (289)
+++.+||++||||++||||||||+|||||+|||||++++++|+++| +.+|++++++||..|++.+|+++.||.+
T Consensus 148 ~~~~~ik~~LlDQ~~iaGIGN~y~~EiLf~a~IhP~~~~~~L~~~e------~~~L~~~~~~vl~~a~~~~g~~~~~~~~ 221 (268)
T 1k82_A 148 KKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAE------CELLARVIKAVLLRSIEQGGTTLKDFLQ 221 (268)
T ss_dssp TCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHHHHHHHHHHHTTCCCCC----
T ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 6665541488617604667588999999872798668632399999------9999999999999999948973654405
Q ss_pred CCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 778778741331665738771078778878999987812063877679
Q gi|254780625|r 242 IDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 242 ~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
++|++|+|+.+|+||+|+|+|| ++||++|++++++||+|||||+|||
T Consensus 222 ~~g~~g~~~~~~~Vy~r~g~~C-~~Cg~~I~~~~~~gR~ty~Cp~CQk 268 (268)
T 1k82_A 222 SDGKPGYFAQELQVYGRKGEPC-RVCGTPIVATKHAQRATFYCRQCQK 268 (268)
T ss_dssp ----CCSCGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECHHHCC
T ss_conf 7898787630568948798979-9999988999988974298931139