HHsearch results for GI: 254780625 and protein with PDBid: 1mu5_A
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=96.16 E-value=0.025 Score=33.61 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC--CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56555332211106788874201--4542100111265435641368999999871787783122220010158999999
Q gi|254780625|r 140 RTLGPEPADNSFNAIYLTHQFHK--KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKL 217 (289)
Q Consensus 140 ~~lGpD~l~~~~~~~~~~~~l~~--~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L 217 (289)
..+.|.|.. .+...+...++. ....+..+| ++-|+.||+-.+.||+-.++++|.....+|+++| +.+|
T Consensus 228 ~eikPHP~g--v~l~~l~~ml~~~~~~~~l~~FL--~~~Fs~V~~~~a~~i~~~~g~~~~~~p~~l~~~e------~~~l 297 (471)
T 1mu5_A 228 QEVKPHPYG--VDREEIKILINNLKRDYTIKEFL--VNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRL 297 (471)
T ss_dssp CCCCCCGGG--CCHHHHHHHSTTCSSCCBHHHHH--TTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTH------HHHH
T ss_pred HHCCCCCCC--CCHHHHHHHHHHCCCCCCHHHHH--HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHH
T ss_conf 312688002--00677999998554666267888--8754776989999999974999777714499999------9999
Q ss_pred HHHHHHH
Q ss_conf 9987887
Q gi|254780625|r 218 IQEIQKV 224 (289)
Q Consensus 218 ~~~i~~v 224 (289)
.++.+++
T Consensus 298 ~~a~~~~ 304 (471)
T 1mu5_A 298 VETFKKY 304 (471)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
T ss_conf 9999853