HHsearch results for GI: 254780625 and protein with PDBid: 1mu5_A

>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=96.16  E-value=0.025  Score=33.61  Aligned_cols=75  Identities=19%  Similarity=0.320  Sum_probs=58.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHC--CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             56555332211106788874201--4542100111265435641368999999871787783122220010158999999
Q gi|254780625|r  140 RTLGPEPADNSFNAIYLTHQFHK--KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKL  217 (289)
Q Consensus       140 ~~lGpD~l~~~~~~~~~~~~l~~--~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L  217 (289)
                      ..+.|.|..  .+...+...++.  ....+..+|  ++-|+.||+-.+.||+-.++++|.....+|+++|      +.+|
T Consensus       228 ~eikPHP~g--v~l~~l~~ml~~~~~~~~l~~FL--~~~Fs~V~~~~a~~i~~~~g~~~~~~p~~l~~~e------~~~l  297 (471)
T 1mu5_A          228 QEVKPHPYG--VDREEIKILINNLKRDYTIKEFL--VNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRL  297 (471)
T ss_dssp             CCCCCCGGG--CCHHHHHHHSTTCSSCCBHHHHH--TTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTH------HHHH
T ss_pred             HHCCCCCCC--CCHHHHHHHHHHCCCCCCHHHHH--HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHH
T ss_conf             312688002--00677999998554666267888--8754776989999999974999777714499999------9999


Q ss_pred             HHHHHHH
Q ss_conf             9987887
Q gi|254780625|r  218 IQEIQKV  224 (289)
Q Consensus       218 ~~~i~~v  224 (289)
                      .++.+++
T Consensus       298 ~~a~~~~  304 (471)
T 1mu5_A          298 VETFKKY  304 (471)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
T ss_conf             9999853