HHsearch results for GI: 254780625 and protein with PDBid: 1tdz_A
>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1pji_A* 1pm5_A* 1xc8_A* 3c58_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=100.00 E-value=0 Score=546.54 Aligned_cols=271 Identities=38% Similarity=0.669 Sum_probs=254.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 96764367889889998679778899964833265787789997289889999605308999503553100152553279
Q gi|254780625|r 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSF 80 (289)
Q Consensus 1 MPElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~ 80 (289)
||||||||++++.|++.++|++|++|++.++++++..++++.+.|.|++|++|.|+||||+|+|+++.+|++||||+|+|
T Consensus 1 MPElPEVe~~~~~L~~~l~g~~I~~v~~~~~~~~~~~~~~~~~~L~G~~i~~v~r~GK~l~~~~~~~~~l~~HlgMtG~~ 80 (272)
T 1tdz_A 1 MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKY 80 (272)
T ss_dssp --CHHHHHHHHHHHHHHHTTCBCCEEEESCGGGBTTCHHHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTCEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCEE
T ss_conf 98479999999999997389999999989864347872889977599899999820489999854894699863114446
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98147854224587663389997068876048999815876641001455301005323565553322111067888742
Q gi|254780625|r 81 IIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQF 160 (289)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~lGpD~l~~~~~~~~~~~~l 160 (289)
++.+.. ...++|.++.+.++++ .++|.|+|+||.+.+....+...++.++++||||+++.++.+.|.+.+
T Consensus 81 ~~~~~~----~~~~~~~~~~~~~~~~------~~~~~D~r~fg~~~~~~~~~~~~~~~~~~lgpd~l~~~~~~~~~~~~~ 150 (272)
T 1tdz_A 81 RLATLD----APREKHDHLTMKFADG------QLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKL 150 (272)
T ss_dssp EEECTT----CCCCTTEEEEEECSSC------EEEEECTTSCCEEEEEEGGGHHHHHHHHTCCCCSSTTTCCHHHHHHHH
T ss_pred EEECCC----CCCCCCCEEEEECCCC------EEEEEECCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 750366----8887652699960398------499996232306777514101232133148987554435199999866
Q ss_pred HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 01454210011126543564136899999987178778312222001015899999999878876765421887553111
Q gi|254780625|r 161 HKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240 (289)
Q Consensus 161 ~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~vl~~a~~~gG~~~~~~~ 240 (289)
..++++||++||||++||||||||+|||||+|||||++++++|+++| +.+|+++++.+|..|++.||+++++|
T Consensus 151 ~~~~~~Ik~~LlDQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~L~~~e------~~~L~~~~~~vl~~a~~~~~~~~~~~- 223 (272)
T 1tdz_A 151 RKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESS------IHLLHDSIIEILQKAIKLGGSSIRTY- 223 (272)
T ss_dssp HHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHH------HHHHHHHHHHHHHHHHHTTCCCC----
T ss_pred HHCCCCCCEEEECCCEECCCCHHHHHHHHHHHCCCCCCCHHHCCHHH------HHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_conf 42033200267507635444473798998872798676752407999------99999999999999998199823245-
Q ss_pred CCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC
Q ss_conf 6778778741331665738771078778878999987812063877679
Q gi|254780625|r 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289)
Q Consensus 241 ~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289)
...++.|.++.+|+||+|+|+|| |+||++|++++++||+|||||.|||
T Consensus 224 ~~~~~~g~~~~~~~Vy~r~g~~C-p~Cg~~I~~~~~~gR~t~~Cp~CQk 271 (272)
T 1tdz_A 224 SALGSTGKMQNELQVYGKTGEKC-SRCGAEIQKIKVAGRGTHFCPVCQQ 271 (272)
T ss_dssp --CCCCCCGGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCEEECCCCCC
T ss_conf 77898787764048838898979-9999989999999981099927789