HHSEARCH alignment of GI: 254780625 and SCOP domain: d1k82a1

Alignment
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=99.95  E-value=4.7e-29  Score=203.78  Aligned_cols=88  Identities=39%  Similarity=0.663  Sum_probs=85.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55332211106788874201454210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r  143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ  222 (289)
Q Consensus       143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~  222 (289)
                      |||||+++|+.+.|.+.+++++++||++||||++||||||||+|||||+|||||++++++|+++|      +.+|+++++
T Consensus         1 GPDpl~~~~~~~~~~~~l~~~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~L~~~~------~~~L~~~i~   74 (88)
T d1k82a1           1 GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAE------CELLARVIK   74 (88)
T ss_dssp             CCCTTSTTSCHHHHHHHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCHHH------HHHHHHHHH
T ss_conf             99999986799999999866885189999705333552118999999997788568187789999------999999999


Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             87676542188755
Q gi|254780625|r  223 KVLIDAIDAGGSSL  236 (289)
Q Consensus       223 ~vl~~a~~~gG~~~  236 (289)
                      +||.+|++.||+|+
T Consensus        75 ~vl~~a~~~gGsti   88 (88)
T d1k82a1          75 AVLLRSIEQGGTTL   88 (88)
T ss_dssp             HHHHHHHHTTCCCC
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99999999489689


SCOP domain information

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Escherichia coli [TaxId: 562]