HHSEARCH alignment of GI: 254780625 and SCOP domain: d1r2za2

Alignment
>d1r2za2 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.97  E-value=2.2e-30  Score=212.34  Aligned_cols=131  Identities=31%  Similarity=0.547  Sum_probs=115.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCC-CCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCE
Q ss_conf             67643678898899986797788999648332-657-8778999728988999960530899950355310015255327
Q gi|254780625|r    2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL-RFD-FPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGS   79 (289)
Q Consensus         2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~-~~~-~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~   79 (289)
                      |||||||++++.|++.+.|++|++|++.+++. +.+ .++.|.+.|.|++|.+|.|+||||+++||++ +|++||||||+
T Consensus         1 PELPEVe~~~~~L~~~~~g~~I~~v~v~~~~~~~~~~~~~~~~~~l~g~~I~~v~RrGK~l~~~l~~~-~l~~HLgMtG~   79 (133)
T d1r2za2           1 PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRD-ALISHLRMEGR   79 (133)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCBEEEEEESCGGGEEESSSHHHHHHHHTTCBCCEEEEETTEEEEECSSE-EEEEECTTTCE
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEECCCE-EEEEECCCCCE
T ss_conf             98702999999999985898999999807722137789899998734871444786579999904660-68975034725


Q ss_pred             EEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC
Q ss_conf             998147854224587663389997068876048999815876641001455301005323565
Q gi|254780625|r   80 FIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL  142 (289)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l  142 (289)
                      |.+.+...    ..++|+|+.|.|+|+.     .++|.|+|+||++++++..+...+|+|++|
T Consensus        80 ~~~~~~~~----~~~kh~~~~~~~~~g~-----~l~f~D~RrFG~i~l~~~~~~~~~~~l~~L  133 (133)
T d1r2za2          80 YAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDVRKFGTMHVYAKEEADRRPPLAEL  133 (133)
T ss_dssp             EEEEETTS----CCCTTEEEEEEETTSE-----EEEEECTTCCCEEEEEEHHHHTTSTTTTTC
T ss_pred             EEEEECCC----CCCCCEEEEEEECCCC-----EEEEECCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             88873278----7766559999947999-----999985898239999708640129310029


SCOP domain information

class: All beta proteins
fold: N-terminal domain of MutM-like DNA repair proteins
superfamily: N-terminal domain of MutM-like DNA repair proteins
family: N-terminal domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Bacillus stearothermophilus [TaxId: 1422]