HHSEARCH alignment of GI: 254780625 and SCOP domain: d1tdha1

Alignment
>d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84  E-value=7.2e-22  Score=157.61  Aligned_cols=82  Identities=22%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             CCCCCCCCCCHHHHHHHHH--H-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             5553322111067888742--0-145421001112654356413689999998717877831222200101589999999
Q gi|254780625|r  142 LGPEPADNSFNAIYLTHQF--H-KKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLI  218 (289)
Q Consensus       142 lGpD~l~~~~~~~~~~~~l--~-~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~  218 (289)
                      .|||||+++++++.+....  + .++++||.+||||++||||||||++||||.|+|||++++.+|++++      ..+|+
T Consensus         2 rGPD~L~e~~~f~~~~~~~~~~k~~~~~i~~~LldQ~~~aGiGN~~~~EiLf~a~i~P~~~~~~l~~~~------~~~l~   75 (115)
T d1tdha1           2 RGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEAL------QQHRP   75 (115)
T ss_dssp             CCCCTTTCHHHHHHHHHHTTTSGGGGSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGG------C----
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHCCCCHHHHHHHHHHCCCCCCCCHHHCCHHH------HHHHH
T ss_conf             798959897364199999875022688499998546431251389999999984899777040438999------96777


Q ss_pred             HHHHHHHHHHH
Q ss_conf             98788767654
Q gi|254780625|r  219 QEIQKVLIDAI  229 (289)
Q Consensus       219 ~~i~~vl~~a~  229 (289)
                      +++..+++.+.
T Consensus        76 ~~~l~~~~~~~   86 (115)
T d1tdha1          76 SPELTLSQKIR   86 (115)
T ss_dssp             -CCSCHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             66778888877


SCOP domain information

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: Endonuclease VIII-like 1 (NEIL1)
species: Human (Homo sapiens) [TaxId: 9606]