HHSEARCH alignment of GI: 254780625 and SCOP domain: d1tdha2

Alignment

Probab=99.90  E-value=7.9e-24  Score=170.18  Aligned_cols=120  Identities=23%  Similarity=0.299  Sum_probs=95.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECC---------CCCCCC
Q ss_conf             67643678898899986797788999648332657877899972898899996053089995035---------531001
Q gi|254780625|r    2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEG---------NLSIIV   72 (289)
Q Consensus         2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~---------~~~L~~   72 (289)
                      |||||||++++.|++.+.|++|+.+.+..+..+++..   ...+.++.| ++.|+||+|++.+++         +.+|++
T Consensus         1 PELPEVE~~~r~l~~~l~g~~I~~~i~~~~~~~~p~~---~~~~~~~~i-~~~rrGK~l~l~l~~~~~~~~~~~~~~L~~   76 (130)
T d1tdha2           1 PEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEV---PFESSAYRI-SASARGKELRLILSPLPGAQPQQEPLALVF   76 (130)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCEEEECEECSSCCSCCC---CCEEEEEEE-EEEEETTEEEEEEEECTTCSSCCCCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC---CCCCCCCEE-EEEECCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf             9884028999999998499889679981852358777---655765199-998014399999058754556678715999


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCC
Q ss_conf             525532799814785422458766338999706887604899981587664100145530
Q gi|254780625|r   73 HLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSL  132 (289)
Q Consensus        73 HlgM~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~  132 (289)
                      ||||||+|.+...+     ..+||+|++|.|+++..  ...+.|+|+|+||++++.++..
T Consensus        77 HLGMtG~l~~~~~~-----~~~kh~hv~f~~~~~~~--~~~L~f~D~RrFG~~~l~d~~~  129 (130)
T d1tdha2          77 RFGMSGSFQLVPRE-----ELPRHAHLRFYTAPPGP--RLALCFVDIRRFGRWDLGGKWQ  129 (130)
T ss_dssp             ECTTTCEEEEEEGG-----GCCTTEEEEEEBCSSSS--CEEEEEECTTCCCEEEESSCCC
T ss_pred             ECCCCEEEEECCCC-----CCCCCCEEEEEECCCCC--EEEEEEECCCCCEEEEECCCCC
T ss_conf             83662689972566-----78873389999928997--5899998689862689578889

SCOP domain information

class: All beta proteins
fold: N-terminal domain of MutM-like DNA repair proteins
superfamily: N-terminal domain of MutM-like DNA repair proteins
family: N-terminal domain of MutM-like DNA repair proteins
domain: Endonuclease VIII-like 1 (NEIL1)
species: Human (Homo sapiens) [TaxId: 9606]