HHSEARCH alignment of GI: 254780625 and SCOP domain: d1tdza1

Alignment
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=99.95  E-value=4.5e-29  Score=203.89  Aligned_cols=88  Identities=41%  Similarity=0.702  Sum_probs=85.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             55332211106788874201454210011126543564136899999987178778312222001015899999999878
Q gi|254780625|r  143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ  222 (289)
Q Consensus       143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~  222 (289)
                      |||||+++|+.+.|.+.+++++++||++||||++||||||||+|||||+|||||++++++|+++|      +.+|+++++
T Consensus         1 GPDpL~~~f~~~~~~~~l~~~~~~ik~~LldQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~Ls~~~------~~~L~~~i~   74 (88)
T d1tdza1           1 GPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESS------IHLLHDSII   74 (88)
T ss_dssp             CCCSSTTTCCHHHHHHHHHHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHH------HHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCHHH------HHHHHHHHH
T ss_conf             99999875699999999872665089999855434785768999999999758256465769999------999999999


Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             87676542188755
Q gi|254780625|r  223 KVLIDAIDAGGSSL  236 (289)
Q Consensus       223 ~vl~~a~~~gG~~~  236 (289)
                      +||..|++.||+|+
T Consensus        75 ~vl~~ai~~gGttl   88 (88)
T d1tdza1          75 EILQKAIKLGGSSI   88 (88)
T ss_dssp             HHHHHHHHTTCCCC
T ss_pred             HHHHHHHHCCCCCC
T ss_conf             99999999579789


SCOP domain information

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: DNA repair protein MutM (Fpg)
species: Lactococcus lactis [TaxId: 1358]