HHSEARCH alignment of GI: 254780625 and SCOP domain: d2hkja1

Alignment

Probab=99.68  E-value=1.3e-17  Score=130.28  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             55533221110678887420145421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r  142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI  221 (289)
Q Consensus       142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i  221 (289)
                      +.|+|.+  ++.+.|.+.++++++.||..||||+.||||||+|++||||+|||||.+++++|+++|      +.+|++++
T Consensus         1 ikPhP~~--v~~~~l~~~l~~~~~~ik~~l~lq~~f~GvGn~~a~Eil~~agi~P~~~~~~L~~~e------~~~L~~ai   72 (78)
T d2hkja1           1 VKPHPYG--VDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRLVETF   72 (78)
T ss_dssp             CCCCGGG--CCHHHHHHHHHTCSSCCBHHHHHHHHSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHH
T ss_pred             CCCCCCC--CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH------HHHHHHHH
T ss_conf             9999998--899999999984577645999988885566899999999980777566024199999------99999998


Q ss_pred             HHH
Q ss_conf             887
Q gi|254780625|r  222 QKV  224 (289)
Q Consensus       222 ~~v  224 (289)
                      +++
T Consensus        73 r~~   75 (78)
T d2hkja1          73 KKY   75 (78)
T ss_dssp             HHC
T ss_pred             HHH
T ss_conf             606

SCOP domain information

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Topoisomerase VI-B subunit middle domain
domain: Topoisomerase VI-B subunit middle domain
species: Archaeon Sulfolobus shibatae [TaxId: 2286]