HHSEARCH alignment of GI: 254780625 and SCOP domain: d2uubm1

Alignment

Probab=95.65  E-value=0.0067  Score=35.78  Aligned_cols=48  Identities=23%  Similarity=0.396  Sum_probs=38.8

Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             421001112654356413689999998717877831222200101589999999987
Q gi|254780625|r  165 SNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI  221 (289)
Q Consensus       165 ~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i  221 (289)
                      .+|.-+|   +.|-|||.-.|..||..++|+|..++++||++|      +..|-+.+
T Consensus        12 K~v~~AL---t~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~q------i~~I~~~i   59 (125)
T d2uubm1          12 KRVDVAL---TYIYGIGKARAKEALEKTGINPATRVKDLTEAE------VVRLREYV   59 (125)
T ss_dssp             SBHHHHH---TTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHH------HHHHHHHH
T ss_pred             CEEEEEE---EEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHH
T ss_conf             7888763---205581899999999982998333335256999------99999998

SCOP domain information

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Thermus thermophilus [TaxId: 274]