Query gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 289 No_of_seqs 122 out of 2796 Neff 7.7 Searched_HMMs 13730 Date Wed Jun 1 10:23:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780625.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1r2za2 b.113.1.1 (A:2-134) DN 100.0 2.2E-30 1.6E-34 212.3 11.6 131 2-142 1-133 (133) 2 d1r2za1 a.156.1.2 (A:135-228) 100.0 1.4E-30 1E-34 213.5 7.7 94 143-242 1-94 (94) 3 d1tdza2 b.113.1.1 (A:2-131) DN 100.0 7.8E-30 5.7E-34 208.8 11.1 129 3-141 1-129 (130) 4 d1k82a2 b.113.1.1 (A:1-128) DN 100.0 2.3E-29 1.7E-33 205.8 13.5 128 2-142 1-128 (128) 5 d1k82a1 a.156.1.2 (A:129-216) 100.0 4.7E-29 3.4E-33 203.8 7.4 88 143-236 1-88 (88) 6 d1ee8a2 b.113.1.1 (A:1-121) DN 100.0 1E-28 7.5E-33 201.6 9.1 121 2-142 1-121 (121) 7 d1tdza1 a.156.1.2 (A:132-219) 100.0 4.5E-29 3.3E-33 203.9 6.9 88 143-236 1-88 (88) 8 d1ee8a1 a.156.1.2 (A:122-210) 100.0 5.2E-29 3.8E-33 203.5 6.9 88 143-236 1-88 (89) 9 d1k3xa1 a.156.1.2 (A:125-213) 99.9 2.4E-27 1.7E-31 192.8 7.1 86 142-233 1-89 (89) 10 d1k3xa2 b.113.1.1 (A:1-124) En 99.9 9.5E-25 6.9E-29 176.1 9.7 124 2-141 1-124 (124) 11 d1tdha2 b.113.1.1 (A:2-131) En 99.9 7.9E-24 5.8E-28 170.2 10.6 120 2-132 1-129 (130) 12 d1tdha1 a.156.1.2 (A:132-246) 99.8 7.2E-22 5.2E-26 157.6 4.8 82 142-229 2-86 (115) 13 d2hkja1 a.156.1.3 (A:229-306) 99.7 1.3E-17 9.4E-22 130.3 5.0 75 142-224 1-75 (78) 14 d1ee8a3 g.39.1.8 (A:211-266) D 99.6 5.9E-16 4.3E-20 119.6 4.0 52 237-289 2-53 (56) 15 d1r2za3 g.39.1.8 (A:229-274) D 99.5 5.5E-15 4E-19 113.4 4.1 46 243-289 1-46 (46) 16 d1tdza3 g.39.1.8 (A:225-271) D 99.5 8.2E-15 6E-19 112.3 4.0 45 244-289 2-46 (47) 17 d1k82a3 g.39.1.8 (A:225-268) D 99.5 1.4E-14 9.9E-19 110.9 3.9 44 245-289 1-44 (44) 18 d1k3xa3 g.39.1.8 (A:223-262) E 99.2 3.2E-12 2.4E-16 95.6 2.7 37 252-289 4-40 (40) 19 d2gy9m1 a.156.1.1 (M:1-114) Ri 95.8 0.0058 4.3E-07 36.2 4.6 50 164-222 11-60 (114) 20 d2uubm1 a.156.1.1 (M:2-126) Ri 95.7 0.0067 4.9E-07 35.8 4.5 48 165-221 12-59 (125) 21 d2i0za2 e.74.1.1 (A:193-361) F 86.1 0.54 3.9E-05 23.5 4.6 51 162-223 102-152 (169) 22 d1qyra_ c.66.1.24 (A:) High le 82.1 0.57 4.2E-05 23.4 3.3 52 157-223 199-250 (252) 23 d1vd4a_ g.41.3.1 (A:) Transcri 64.2 1.3 9.4E-05 21.1 1.5 26 262-288 16-46 (62) 24 d1l1oc_ b.40.4.3 (C:) Replicat 63.7 0.71 5.2E-05 22.8 0.1 12 213-224 164-175 (178) 25 d2jnea1 g.41.18.1 (A:1-71) Hyp 62.2 2.2 0.00016 19.6 2.4 27 261-288 32-58 (71) 26 d2avue1 e.64.1.1 (E:5-160) Fla 59.8 1.8 0.00013 20.2 1.5 26 261-287 131-156 (156) 27 d2i5ha1 e.71.1.1 (A:16-195) Hy 54.4 5.8 0.00042 16.9 4.1 54 152-206 96-149 (180) 28 d2edua1 a.60.2.7 (A:8-98) KIF2 39.0 10 0.00073 15.4 4.4 45 176-220 37-82 (91) 29 d2k4xa1 g.41.8.8 (A:1-55) Ribo 31.3 7.9 0.00058 16.0 1.1 28 258-288 16-43 (55) 30 d2ct7a1 g.44.1.4 (A:8-80) Ring 30.2 11 0.00077 15.2 1.6 26 261-289 19-44 (73) 31 d1hk8a_ c.7.1.3 (A:) Class III 27.3 7.1 0.00052 16.4 0.3 25 261-288 516-540 (561) 32 d1jj2y_ g.41.8.1 (Y:) Ribosoma 26.2 16 0.0012 14.0 2.1 25 261-289 28-53 (73) 33 d1pd0a5 g.41.10.1 (A:216-300) 25.0 15 0.0011 14.3 1.6 24 263-288 16-42 (85) 34 d2fiya1 e.59.1.1 (A:19-308) Fd 23.7 18 0.0013 13.7 2.8 27 261-288 165-197 (290) 35 d2akla2 g.41.3.5 (A:3-40) Hypo 22.0 11 0.0008 15.1 0.5 23 262-288 5-27 (38) 36 d1x62a2 g.39.1.3 (A:8-42) PDZ 21.0 7.9 0.00058 16.0 -0.4 25 262-287 10-34 (35) 37 d1wd2a_ g.44.1.1 (A:) Ariadne- 20.8 6.9 0.0005 16.4 -0.8 22 260-284 6-27 (60) 38 d1lkoa2 g.41.5.1 (A:148-191) R 20.6 21 0.0015 13.3 2.6 22 262-288 10-31 (44) 39 d1h3na3 c.26.1.1 (A:1-225,A:41 20.4 15 0.0011 14.2 0.9 10 169-178 303-312 (494) No 1 >d1r2za2 b.113.1.1 (A:2-134) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Probab=99.97 E-value=2.2e-30 Score=212.34 Aligned_cols=131 Identities=31% Similarity=0.547 Sum_probs=115.1 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCC-CCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCE Q ss_conf 67643678898899986797788999648332-657-8778999728988999960530899950355310015255327 Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL-RFD-FPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGS 79 (289) Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~-~~~-~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~ 79 (289) |||||||++++.|++.+.|++|++|++.+++. +.+ .++.|.+.|.|++|.+|.|+||||+++||++ +|++||||||+ T Consensus 1 PELPEVe~~~~~L~~~~~g~~I~~v~v~~~~~~~~~~~~~~~~~~l~g~~I~~v~RrGK~l~~~l~~~-~l~~HLgMtG~ 79 (133) T d1r2za2 1 PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRD-ALISHLRMEGR 79 (133) T ss_dssp CCHHHHHHHHHHHHHHHTTCBEEEEEESCGGGEEESSSHHHHHHHHTTCBCCEEEEETTEEEEECSSE-EEEEECTTTCE T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEECCCE-EEEEECCCCCE T ss_conf 98702999999999985898999999807722137789899998734871444786579999904660-68975034725 Q ss_pred EEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC Q ss_conf 998147854224587663389997068876048999815876641001455301005323565 Q gi|254780625|r 80 FIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142 (289) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l 142 (289) |.+.+... ..++|+|+.|.|+|+. .++|.|+|+||++++++..+...+|+|++| T Consensus 80 ~~~~~~~~----~~~kh~~~~~~~~~g~-----~l~f~D~RrFG~i~l~~~~~~~~~~~l~~L 133 (133) T d1r2za2 80 YAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDVRKFGTMHVYAKEEADRRPPLAEL 133 (133) T ss_dssp EEEEETTS----CCCTTEEEEEEETTSE-----EEEEECTTCCCEEEEEEHHHHTTSTTTTTC T ss_pred EEEEECCC----CCCCCEEEEEEECCCC-----EEEEECCCCCEEEEEEECCCCCCCCCCCCC T ss_conf 88873278----7766559999947999-----999985898239999708640129310029 No 2 >d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Probab=99.96 E-value=1.4e-30 Score=213.51 Aligned_cols=94 Identities=38% Similarity=0.621 Sum_probs=91.4 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55332211106788874201454210011126543564136899999987178778312222001015899999999878 Q gi|254780625|r 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289) Q Consensus 143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289) |||||+++|+.+.|.+.+++++++||++||||+++|||||||+|||||+|||||++++++|+++| +++|+++++ T Consensus 1 GPDpL~~~~~~~~~~~~l~~~~~~ik~~LlDQ~~~aGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e------~~~L~~~~~ 74 (94) T d1r2za1 1 GPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKE------IERLHEEMV 74 (94) T ss_dssp CCCTTSTTSCHHHHHHHHTTCCSBHHHHHHCTTTSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH T ss_conf 99999986899999999865886289999836545786508999999999726641497866779------999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCC Q ss_conf 87676542188755311167 Q gi|254780625|r 223 KVLIDAIDAGGSSLRDYVHI 242 (289) Q Consensus 223 ~vl~~a~~~gG~~~~~~~~~ 242 (289) +||..|++.||+|++||+|+ T Consensus 75 ~vl~~ai~~gG~t~~dy~nt 94 (94) T d1r2za1 75 ATIGEAVMKGGSTVRTYVNT 94 (94) T ss_dssp HHHHHHHHTTCCCSSSCCCT T ss_pred HHHHHHHHCCCCCHHHHCCC T ss_conf 99999999599888874385 No 3 >d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Probab=99.96 E-value=7.8e-30 Score=208.75 Aligned_cols=129 Identities=29% Similarity=0.504 Sum_probs=115.3 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEEE Q ss_conf 76436788988999867977889996483326578778999728988999960530899950355310015255327998 Q gi|254780625|r 3 ELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFII 82 (289) Q Consensus 3 ElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~~ 82 (289) ||||||+++++|++.+.|++|++|++.+++.+...+++|.+.|.|++|.+|.|+||||++.|+++.+|++||||||+|.+ T Consensus 1 ELPEVe~~~~~L~~~l~g~~I~~v~v~~~~~~~~~~~~~~~~l~g~~i~~v~RrGK~l~i~l~~~~~L~~HLgMtG~~~~ 80 (130) T d1tdza2 1 ELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYRL 80 (130) T ss_dssp CHHHHHHHHHHHHHHHTTCBCCEEEESCGGGBTTCHHHHHHHHTTCBEEEEEEETTEEEEEETTTEEEEEECTTTCEEEE T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCEEEEE T ss_conf 98318999999999857998999997674331486288898735965775780079999995489599986115607987 Q ss_pred ECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCC Q ss_conf 14785422458766338999706887604899981587664100145530100532356 Q gi|254780625|r 83 EHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRT 141 (289) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~ 141 (289) ...+. +.++|+|+.|.|+++ .++|.|+|+||+++++++.+...++.+++ T Consensus 81 ~~~~~----~~~kh~~~~~~~~~g------~l~f~D~R~FG~i~l~~~~~~~~~~~~kk 129 (130) T d1tdza2 81 ATLDA----PREKHDHLTMKFADG------QLIYADVRKFGTWELISTDQVLPYFLKKK 129 (130) T ss_dssp ECTTC----CCCTTEEEEEECSSC------EEEEECTTSCCEEEEEEGGGHHHHHHHHT T ss_pred EECCC----CCCCCCEEEEECCCC------EEEEECCCCEEEEEEEECCCCCCCHHHCC T ss_conf 20468----987672899990899------99998489807999987852355445507 No 4 >d1k82a2 b.113.1.1 (A:1-128) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Probab=99.96 E-value=2.3e-29 Score=205.78 Aligned_cols=128 Identities=35% Similarity=0.524 Sum_probs=110.2 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799 Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289) Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289) |||||||++++.|++.+.|++|++|.+.++++++..++.+ +.|.|++|++|.|+||||+++||++ +|++||||||+|. T Consensus 1 PELPEVEtv~~~L~~~~~g~~I~~v~~~~~~~~~~~~~~~-~~l~g~~i~~v~RrGK~l~~~l~~~-~l~iHLgMtG~l~ 78 (128) T d1k82a2 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEI-YRLSDQPVLSVQRRAKYLLLELPEG-WIIIHLGMSGSLR 78 (128) T ss_dssp CCHHHHHHHHHHHHHHHBTCEEEEEEESCCBSSSBCCHHH-HHCCSEEBCEEEEETTEEEEECSSC-EEEEECTTTCEEE T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCHHH-HHHHCCCEEHHHHEEEEEEEECCCC-CEEEEECCCEEEE T ss_conf 9870389999999998689999899999843114068779-9862885211220446799984799-6798862431899 Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC Q ss_conf 8147854224587663389997068876048999815876641001455301005323565 Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142 (289) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l 142 (289) +..... .+++|+|+.|.|+|+. .++|+|+|+||++.+.++.+ .++.+++| T Consensus 79 ~~~~~~----~~~kh~~~~~~~~~g~-----~L~f~D~RrFG~i~~~~~~~--~~~~l~~L 128 (128) T d1k82a2 79 ILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRRFGAWLWTKELE--GHNVLTHL 128 (128) T ss_dssp EESSSC----CCCTTCCEEEEETTSC-----EEEEECSSCCCEEEEESCSS--SSTTTTTC T ss_pred EEECCC----CCCCCEEEEEEECCCC-----EEEEECCCCCEEEEECCCHH--HCHHCCCC T ss_conf 985568----9887349999979998-----99998789701899857801--08121179 No 5 >d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Probab=99.95 E-value=4.7e-29 Score=203.78 Aligned_cols=88 Identities=39% Similarity=0.663 Sum_probs=85.8 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55332211106788874201454210011126543564136899999987178778312222001015899999999878 Q gi|254780625|r 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289) Q Consensus 143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289) |||||+++|+.+.|.+.+++++++||++||||++||||||||+|||||+|||||++++++|+++| +.+|+++++ T Consensus 1 GPDpl~~~~~~~~~~~~l~~~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~L~~~~------~~~L~~~i~ 74 (88) T d1k82a1 1 GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAE------CELLARVIK 74 (88) T ss_dssp CCCTTSTTSCHHHHHHHHTTCCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCHHH------HHHHHHHHH T ss_conf 99999986799999999866885189999705333552118999999997788568187789999------999999999 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 87676542188755 Q gi|254780625|r 223 KVLIDAIDAGGSSL 236 (289) Q Consensus 223 ~vl~~a~~~gG~~~ 236 (289) +||.+|++.||+|+ T Consensus 75 ~vl~~a~~~gGsti 88 (88) T d1k82a1 75 AVLLRSIEQGGTTL 88 (88) T ss_dssp HHHHHHHHTTCCCC T ss_pred HHHHHHHHCCCCCC T ss_conf 99999999489689 No 6 >d1ee8a2 b.113.1.1 (A:1-121) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Probab=99.95 E-value=1e-28 Score=201.55 Aligned_cols=121 Identities=35% Similarity=0.594 Sum_probs=105.4 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799 Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289) Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289) |||||||++++.|++.+.|++|++|.+.++... .+.+.+.|++|++|.|+||||+|+||++.+|++||||||+|. T Consensus 1 PELPEVe~~~~~L~~~~~g~~I~~v~~~~~~~~-----~~~~~l~g~~I~~v~RrGK~l~~~l~~~~~l~~HLgMtG~~~ 75 (121) T d1ee8a2 1 PELPEVETTRRRLRPLVLGQTLRQVVHRDPARY-----RNTALAEGRRILEVDRRGKFLLFALEGGVELVAHLGMTGGFR 75 (121) T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECSCTTTE-----ESGGGGTTEEEEEEEEETTEEEEEETTTEEEEEECTTTCEEE T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC-----CHHHHCCCCEEEEEEEEEEEEEEEECCCCEEEECCCCCEEEE T ss_conf 987119999999999868999889993587532-----102221798998897654999999489638986000050676 Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCCC Q ss_conf 8147854224587663389997068876048999815876641001455301005323565 Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142 (289) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~l 142 (289) +. +++|+|+.|.|++. .++|+|+|+||++++++..+..++|.+++| T Consensus 76 ~~---------~~kh~~~~~~~d~~------~L~f~D~RrFG~i~~~~~~~~~~~p~l~~L 121 (121) T d1ee8a2 76 LE---------PTPHTRAALVLEGR------TLYFHDPRRFGRLFGVRRGDYREIPLLLRL 121 (121) T ss_dssp SS---------CCTTEEEEEEESSC------EEEEECTTCCCEEEEEETTCCTTCTHHHHC T ss_pred EE---------CCCCCEEEEEECCC------EEEEECCCCCCEEEEEECCCHHCCHHHHCC T ss_conf 40---------36760699996698------899978888748999608871119324419 No 7 >d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Probab=99.95 E-value=4.5e-29 Score=203.89 Aligned_cols=88 Identities=41% Similarity=0.702 Sum_probs=85.8 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55332211106788874201454210011126543564136899999987178778312222001015899999999878 Q gi|254780625|r 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289) Q Consensus 143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289) |||||+++|+.+.|.+.+++++++||++||||++||||||||+|||||+|||||++++++|+++| +.+|+++++ T Consensus 1 GPDpL~~~f~~~~~~~~l~~~~~~ik~~LldQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~Ls~~~------~~~L~~~i~ 74 (88) T d1tdza1 1 GPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESS------IHLLHDSII 74 (88) T ss_dssp CCCSSTTTCCHHHHHHHHHHCCSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHH------HHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCHHH------HHHHHHHHH T ss_conf 99999875699999999872665089999855434785768999999999758256465769999------999999999 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 87676542188755 Q gi|254780625|r 223 KVLIDAIDAGGSSL 236 (289) Q Consensus 223 ~vl~~a~~~gG~~~ 236 (289) +||..|++.||+|+ T Consensus 75 ~vl~~ai~~gGttl 88 (88) T d1tdza1 75 EILQKAIKLGGSSI 88 (88) T ss_dssp HHHHHHHHTTCCCC T ss_pred HHHHHHHHCCCCCC T ss_conf 99999999579789 No 8 >d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Probab=99.95 E-value=5.2e-29 Score=203.47 Aligned_cols=88 Identities=41% Similarity=0.704 Sum_probs=86.0 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 55332211106788874201454210011126543564136899999987178778312222001015899999999878 Q gi|254780625|r 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289) Q Consensus 143 GpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289) |||||+++|+.+.|.+.+++++++||++||||++||||||||+|||||+|||||++++++|+++| +++|+++++ T Consensus 1 GPDpL~~~~~~~~~~~~l~~~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e------~~~L~~~i~ 74 (89) T d1ee8a1 1 GPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEE------ARRLYRALR 74 (89) T ss_dssp CCCTTSTTCCHHHHHHHHHTCCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHH------HHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCHHH------HHHHHHHHH T ss_conf 99999998799999999863887289999855444777758999999999767135453599999------999999999 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 87676542188755 Q gi|254780625|r 223 KVLIDAIDAGGSSL 236 (289) Q Consensus 223 ~vl~~a~~~gG~~~ 236 (289) +||.+|++.||+|+ T Consensus 75 ~vl~~ai~~gGtt~ 88 (89) T d1ee8a1 75 EVLAEAVELGGSTL 88 (89) T ss_dssp HHHHHHHHTTCCCC T ss_pred HHHHHHHHCCCCCC T ss_conf 99999999579478 No 9 >d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Probab=99.94 E-value=2.4e-27 Score=192.81 Aligned_cols=86 Identities=23% Similarity=0.410 Sum_probs=81.7 Q ss_pred CCCCCCCCCCHHHHHHHHHHC---CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 555332211106788874201---45421001112654356413689999998717877831222200101589999999 Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFHK---KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLI 218 (289) Q Consensus 142 lGpD~l~~~~~~~~~~~~l~~---~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~ 218 (289) ||||||+++|+.+.|.+.+.+ ++++||++||||++||||||||+|||||+|+|||++++++|+++| +++|+ T Consensus 1 lGPD~l~~~~~~~~~~~~l~~~~~~~~~Ik~~LlDQ~~~aGIGN~~~~EiL~~a~i~P~~~~~~L~~~~------~~~L~ 74 (89) T d1k3xa1 1 VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQ------LDALA 74 (89) T ss_dssp CCCBTTCTTCCHHHHHHHHHSTTTTTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHH------HHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCHHH------HHHHH T ss_conf 987969986899999999986202555299998468630354758999999996666047130199999------99999 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 987887676542188 Q gi|254780625|r 219 QEIQKVLIDAIDAGG 233 (289) Q Consensus 219 ~~i~~vl~~a~~~gG 233 (289) +++++++..||+.|| T Consensus 75 ~~~~~v~~~a~~~gG 89 (89) T d1k3xa1 75 HALLEIPRFSYATRG 89 (89) T ss_dssp HHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHCCC T ss_conf 999999999998069 No 10 >d1k3xa2 b.113.1.1 (A:1-124) Endonuclease VIII {Escherichia coli [TaxId: 562]} Probab=99.91 E-value=9.5e-25 Score=176.10 Aligned_cols=124 Identities=19% Similarity=0.296 Sum_probs=101.4 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEE Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035531001525532799 Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGSFI 81 (289) Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~~~~L~~HlgM~G~~~ 81 (289) |||||||++++.|++.+.|++|++|++..+. +..|.+.|.|++|++|.|+||||+|.|+++.+|++||||||+|. T Consensus 1 PElPEVe~~~~~L~~~l~G~~I~~v~~~~~~-----~~~~~~~l~g~~i~~v~RrGK~ll~~l~~~~~l~~HLgMtG~~~ 75 (124) T d1k3xa2 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQ-----LKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWR 75 (124) T ss_dssp CCHHHHHHHHHHHHHHHBTCCCSEEEESSGG-----GTTHHHHHTTCCEEEEEEETTEEEEEETTSCEEEEECTTTCEEE T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-----HHHHHHHCCCCEEEEEEECCCEEEEEECCCCEEEECCCCCEEEE T ss_conf 9883488899889998689899999824787-----37899675999998999620499998589989999265560899 Q ss_pred EECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCCCC Q ss_conf 814785422458766338999706887604899981587664100145530100532356 Q gi|254780625|r 82 IEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSLKYQYPPLRT 141 (289) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~~~~~~~l~~ 141 (289) +...+... +..++.++.|.++++ ..+.| +||.++++++.+...+|+|++ T Consensus 76 i~~~~~~~--~~~~~~rl~~~~~d~-----~~~~~----~~~~i~l~~~~~~~~hp~L~k 124 (124) T d1k3xa2 76 VVDTGEEP--QTTRVLRVKLQTADK-----TILLY----SASDIEMLRPEQLTTHPFLQR 124 (124) T ss_dssp EEETTCCC--CCSSCEEEEEECSSE-----EEEEE----SCCEEEEECTTHHHHSHHHHH T ss_pred EECCCCCC--CCCCEEEEEEECCCC-----EEEEE----CCCCEEEECCCCHHHCCCCCC T ss_conf 96488898--767279999985985-----89996----299379978766200836168 No 11 >d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Probab=99.90 E-value=7.9e-24 Score=170.18 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=95.7 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEEECCEEEEEEECC---------CCCCCC Q ss_conf 67643678898899986797788999648332657877899972898899996053089995035---------531001 Q gi|254780625|r 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELEG---------NLSIIV 72 (289) Q Consensus 2 PElPEVe~~~~~l~~~l~g~~I~~V~~~~~~~~~~~~~~~~~~L~G~~I~~v~r~GK~l~l~l~~---------~~~L~~ 72 (289) |||||||++++.|++.+.|++|+.+.+..+..+++.. ...+.++.| ++.|+||+|++.+++ +.+|++ T Consensus 1 PELPEVE~~~r~l~~~l~g~~I~~~i~~~~~~~~p~~---~~~~~~~~i-~~~rrGK~l~l~l~~~~~~~~~~~~~~L~~ 76 (130) T d1tdha2 1 PEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEV---PFESSAYRI-SASARGKELRLILSPLPGAQPQQEPLALVF 76 (130) T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEEECEECSSCCSCCC---CCEEEEEEE-EEEEETTEEEEEEEECTTCSSCCCCEEEEE T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC---CCCCCCCEE-EEEECCCEEEEEECCCCCCCCCCCCCEEEE T ss_conf 9884028999999998499889679981852358777---655765199-998014399999058754556678715999 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEECCCCCC Q ss_conf 525532799814785422458766338999706887604899981587664100145530 Q gi|254780625|r 73 HLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDLVETSL 132 (289) Q Consensus 73 HlgM~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~R~fG~~~~~~~~~ 132 (289) ||||||+|.+...+ ..+||+|++|.|+++.. ...+.|+|+|+||++++.++.. T Consensus 77 HLGMtG~l~~~~~~-----~~~kh~hv~f~~~~~~~--~~~L~f~D~RrFG~~~l~d~~~ 129 (130) T d1tdha2 77 RFGMSGSFQLVPRE-----ELPRHAHLRFYTAPPGP--RLALCFVDIRRFGRWDLGGKWQ 129 (130) T ss_dssp ECTTTCEEEEEEGG-----GCCTTEEEEEEBCSSSS--CEEEEEECTTCCCEEEESSCCC T ss_pred ECCCCEEEEECCCC-----CCCCCCEEEEEECCCCC--EEEEEEECCCCCEEEEECCCCC T ss_conf 83662689972566-----78873389999928997--5899998689862689578889 No 12 >d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Probab=99.84 E-value=7.2e-22 Score=157.61 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=65.7 Q ss_pred CCCCCCCCCCHHHHHHHHH--H-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 5553322111067888742--0-145421001112654356413689999998717877831222200101589999999 Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQF--H-KKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLI 218 (289) Q Consensus 142 lGpD~l~~~~~~~~~~~~l--~-~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~ 218 (289) .|||||+++++++.+.... + .++++||.+||||++||||||||++||||.|+|||++++.+|++++ ..+|+ T Consensus 2 rGPD~L~e~~~f~~~~~~~~~~k~~~~~i~~~LldQ~~~aGiGN~~~~EiLf~a~i~P~~~~~~l~~~~------~~~l~ 75 (115) T d1tdha1 2 RGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEAL------QQHRP 75 (115) T ss_dssp CCCCTTTCHHHHHHHHHHTTTSGGGGSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGG------C---- T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHCCCCHHHHHHHHHHCCCCCCCCHHHCCHHH------HHHHH T ss_conf 798959897364199999875022688499998546431251389999999984899777040438999------96777 Q ss_pred HHHHHHHHHHH Q ss_conf 98788767654 Q gi|254780625|r 219 QEIQKVLIDAI 229 (289) Q Consensus 219 ~~i~~vl~~a~ 229 (289) +++..+++.+. T Consensus 76 ~~~l~~~~~~~ 86 (115) T d1tdha1 76 SPELTLSQKIR 86 (115) T ss_dssp -CCSCHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 66778888877 No 13 >d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Probab=99.68 E-value=1.3e-17 Score=130.28 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=70.0 Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 55533221110678887420145421001112654356413689999998717877831222200101589999999987 Q gi|254780625|r 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289) Q Consensus 142 lGpD~l~~~~~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289) +.|+|.+ ++.+.|.+.++++++.||..||||+.||||||+|++||||+|||||.+++++|+++| +.+|++++ T Consensus 1 ikPhP~~--v~~~~l~~~l~~~~~~ik~~l~lq~~f~GvGn~~a~Eil~~agi~P~~~~~~L~~~e------~~~L~~ai 72 (78) T d2hkja1 1 VKPHPYG--VDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEE------ITRLVETF 72 (78) T ss_dssp CCCCGGG--CCHHHHHHHHHTCSSCCBHHHHHHHHSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHH------HHHHHHHH T ss_pred CCCCCCC--CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHH------HHHHHHHH T ss_conf 9999998--899999999984577645999988885566899999999980777566024199999------99999998 Q ss_pred HHH Q ss_conf 887 Q gi|254780625|r 222 QKV 224 (289) Q Consensus 222 ~~v 224 (289) +++ T Consensus 73 r~~ 75 (78) T d2hkja1 73 KKY 75 (78) T ss_dssp HHC T ss_pred HHH T ss_conf 606 No 14 >d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Probab=99.57 E-value=5.9e-16 Score=119.63 Aligned_cols=52 Identities=44% Similarity=0.890 Sum_probs=50.4 Q ss_pred CCCCCCCCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC Q ss_conf 31116778778741331665738771078778878999987812063877679 Q gi|254780625|r 237 RDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 237 ~~~~~~~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289) +||++++|+.|+|++.|+||+|+|++| ++||++|++++++||+|||||.||| T Consensus 2 r~y~~~~G~~G~fq~~~~VY~r~g~~C-~~C~~~I~~~~~~~R~t~~Cp~CQ~ 53 (56) T d1ee8a3 2 QSYRQPDGLPGGFQTRHAVYGREGLPC-PACGRPVERRVVAGRGTHFCPTCQG 53 (56) T ss_dssp CCCCCTTSCCCSCGGGCSSTTCTTSBC-TTTCCBCEEEESSSCEEEECTTTTT T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC T ss_conf 785678998774942489864888633-5499637899998975889957427 No 15 >d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Probab=99.50 E-value=5.5e-15 Score=113.40 Aligned_cols=46 Identities=48% Similarity=1.045 Sum_probs=44.1 Q ss_pred CCCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC Q ss_conf 78778741331665738771078778878999987812063877679 Q gi|254780625|r 243 DGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 243 ~g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289) .|+.|+|++.|+||+|+|+|| ++||++|+++.++||+|||||.||| T Consensus 1 eG~~G~fq~~~~VYgR~g~~C-~~C~~~I~~~~~~gR~t~~Cp~CQK 46 (46) T d1r2za3 1 QGEAGTFQHHLYVYGRQGNPC-KRCGTPIEKTVVAGRGTHYCPRCQR 46 (46) T ss_dssp TSCCCSGGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC T ss_pred CCCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECHHHCC T ss_conf 997551703269938889724-8799769999998976787864577 No 16 >d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Probab=99.48 E-value=8.2e-15 Score=112.28 Aligned_cols=45 Identities=56% Similarity=1.057 Sum_probs=43.5 Q ss_pred CCCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC Q ss_conf 8778741331665738771078778878999987812063877679 Q gi|254780625|r 244 GSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 244 g~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289) |+.|+|++.|.||+|+|+|| ++||++|++++++||+|||||.||| T Consensus 2 G~~G~fq~~l~VYgR~g~~C-~~C~~~I~~~~~~gR~t~~Cp~CQk 46 (47) T d1tdza3 2 GSTGKMQNELQVYGKTGEKC-SRCGAEIQKIKVAGRGTHFCPVCQQ 46 (47) T ss_dssp CCCCCGGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTSC T ss_pred CCCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECCCCCC T ss_conf 88615654478968889776-9899478999998964688931048 No 17 >d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Probab=99.46 E-value=1.4e-14 Score=110.87 Aligned_cols=44 Identities=50% Similarity=1.034 Sum_probs=42.2 Q ss_pred CCCCCHHHEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC Q ss_conf 778741331665738771078778878999987812063877679 Q gi|254780625|r 245 SIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 245 ~~g~~~~~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289) ++|+|++.|+||+|+|+|| ++||++|+++.++||+|||||.||| T Consensus 1 k~G~Fq~~~~VYgR~g~~C-~~C~~~I~~~~~~~R~t~~Cp~CQk 44 (44) T d1k82a3 1 KPGYFAQELQVYGRKGEPC-RVCGTPIVATKHAQRATFYCRQCQK 44 (44) T ss_dssp CCCSCGGGCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC T ss_pred CCCCCCCEEEEECCCCCCC-CCCCCEEEEEEECCCCCEECHHHCC T ss_conf 9874823169807889876-8799888899998965687842368 No 18 >d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]} Probab=99.18 E-value=3.2e-12 Score=95.60 Aligned_cols=37 Identities=35% Similarity=0.970 Sum_probs=35.0 Q ss_pred HEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCC Q ss_conf 31665738771078778878999987812063877679 Q gi|254780625|r 252 AFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 252 ~~~vy~r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289) .|+||+|+|+|| ++||++|.++.++||+|||||.||- T Consensus 4 ~~~VYgR~g~pC-~~C~~~I~~~~~~gR~t~~Cp~CQ~ 40 (40) T d1k3xa3 4 RFKVFHRDGEPC-ERCGSIIEKTTLSSRPFYWCPGCQH 40 (40) T ss_dssp CCSSTTCTTSBC-TTTCCBCEEEEETTEEEEECTTTCC T ss_pred EEEEECCCCCCC-CCCCCEEEEEEECCCCCEECHHHCC T ss_conf 778708897826-8698889899988997788956588 No 19 >d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Probab=95.78 E-value=0.0058 Score=36.15 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=40.4 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 54210011126543564136899999987178778312222001015899999999878 Q gi|254780625|r 164 NSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQ 222 (289) Q Consensus 164 ~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~ 222 (289) +.+|.-+| +.|=|||...+..||..++|+|..++.+||++| +..|-+.+. T Consensus 11 ~K~v~~AL---t~I~GIG~~~A~~Ic~~lgid~~~kv~~Lt~~q------i~~l~~~i~ 60 (114) T d2gy9m1 11 HKHAVIAL---TSIYGVGKTRSKAILAAAGIAEDVKISELSEGQ------IDTLRDEVA 60 (114) T ss_dssp SSBHHHHH---TTSSSCCHHHHHHHHHHHTCCTTSBTTSCCHHH------HHHHHHHHH T ss_pred CCEEEEEE---EEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHHH T ss_conf 97888872---315684899999999981989531357456999------999999987 No 20 >d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Probab=95.65 E-value=0.0067 Score=35.78 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=38.8 Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 421001112654356413689999998717877831222200101589999999987 Q gi|254780625|r 165 SNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEI 221 (289) Q Consensus 165 ~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i 221 (289) .+|.-+| +.|-|||.-.|..||..++|+|..++++||++| +..|-+.+ T Consensus 12 K~v~~AL---t~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~q------i~~I~~~i 59 (125) T d2uubm1 12 KRVDVAL---TYIYGIGKARAKEALEKTGINPATRVKDLTEAE------VVRLREYV 59 (125) T ss_dssp SBHHHHH---TTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHH------HHHHHHHH T ss_pred CEEEEEE---EEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHH------HHHHHHHH T ss_conf 7888763---205581899999999982998333335256999------99999998 No 21 >d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Probab=86.05 E-value=0.54 Score=23.54 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=39.0 Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 14542100111265435641368999999871787783122220010158999999998788 Q gi|254780625|r 162 KKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQK 223 (289) Q Consensus 162 ~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~ 223 (289) ..++.++.+|.. -+-.-+...+|=.++|+|..++++|++++ +.+|.+.+++ T Consensus 102 ~~~~~~~~~l~~-----~lp~~l~~~ll~~~~i~~~~~~~~ls~~~------~~~L~~~Lk~ 152 (169) T d2i0za2 102 DPKKGIKNVLKG-----YVPERYFLFLLEKNEIDGSEQAGQVSHEK------IRALVKDFKE 152 (169) T ss_dssp STTSBHHHHTTT-----SSCHHHHHHHHHHTTCCTTSBGGGSCHHH------HHHHHHHHHH T ss_pred CCCHHHHHHCCC-----CCCHHHHHHHHHHCCCCCCCCHHHCCHHH------HHHHHHHHHC T ss_conf 341347664200-----15157899999980996237877789999------9999999968 No 22 >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Probab=82.06 E-value=0.57 Score=23.37 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=39.7 Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 8742014542100111265435641368999999871787783122220010158999999998788 Q gi|254780625|r 157 THQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQK 223 (289) Q Consensus 157 ~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~i~~ 223 (289) ...+..++++|++.| .+++..|+|=.++|+|...+.+||.+| +.+|++++.+ T Consensus 199 ~~~F~~rRK~l~~~L---------~~~~~~~~l~~~~i~~~~R~e~Ls~~~------~~~L~~~l~~ 250 (252) T d1qyra_ 199 TEAFNQRRKTIRNSL---------GNLFSVEVLTGMGIDPAMRAENISVAQ------YCQMANYLAE 250 (252) T ss_dssp HHHHHTTTSBHHHHT---------TTTCCHHHHHHTTCCTTSBGGGSCHHH------HHHHHHHHHH T ss_pred HHHHCCCHHHHHHHH---------HHHCCHHHHHHCCCCCCCCHHHCCHHH------HHHHHHHHHH T ss_conf 998714538899988---------634539999977988332943499999------9999999984 No 23 >d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]} Probab=64.21 E-value=1.3 Score=21.09 Aligned_cols=26 Identities=27% Similarity=0.747 Sum_probs=12.9 Q ss_pred CCCCCCCCEEEEEEE-----CCCCEEECCCCC Q ss_conf 107877887899998-----781206387767 Q gi|254780625|r 262 PCLSNCGQMIRRIVQ-----AGRSTFYCTYCQ 288 (289) Q Consensus 262 ~C~~~CG~~I~~~~~-----~gR~ty~Cp~CQ 288 (289) .| |.|+.+...... .-..+|-|..|+ T Consensus 16 ~C-p~C~~~ys~Lda~~L~d~~~~~F~C~~C~ 46 (62) T d1vd4a_ 16 KC-PVCSSTFTDLEANQLFDPMTGTFRCTFCH 46 (62) T ss_dssp EC-SSSCCEEEHHHHHHHEETTTTEEBCSSSC T ss_pred EC-CCCCCCCCHHHHHHHCCCCCCEEEECCCC T ss_conf 88-99888805543877369678939735889 No 24 >d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Probab=63.66 E-value=0.71 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999987887 Q gi|254780625|r 213 ILYKLIQEIQKV 224 (289) Q Consensus 213 ~~~~L~~~i~~v 224 (289) ...+|.+.|.+. T Consensus 164 e~~~L~~~I~~~ 175 (178) T d1l1oc_ 164 YGRRLVMSIRRS 175 (178) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999986 No 25 >d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Probab=62.22 E-value=2.2 Score=19.62 Aligned_cols=27 Identities=19% Similarity=0.613 Sum_probs=23.4 Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCCCC Q ss_conf 7107877887899998781206387767 Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289) Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289) .-| |.|+.++++.+-=|--.|||.+|- T Consensus 32 a~C-PdC~~~Le~LkACGAvdYFC~~cn 58 (71) T d2jnea1 32 ALC-PDCHQPLQVLKACGAVDYFCQHGH 58 (71) T ss_dssp EEC-TTTCSBCEEEEETTEEEEEETTTT T ss_pred EEC-CCCCCHHHHHHHCCCHHHHHCCCC T ss_conf 758-860208999886263335443687 No 26 >d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]} Probab=59.78 E-value=1.8 Score=20.23 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=20.6 Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCCC Q ss_conf 710787788789999878120638776 Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTYC 287 (289) Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~C 287 (289) .+| ++||+.-......-++.|.||-| T Consensus 131 ~~C-~~C~g~fv~~~~~~~~~~~Cp~C 156 (156) T d2avue1 131 SSC-NCCGGNFITHAHQPVGSFACSLC 156 (156) T ss_dssp EEC-TTTCCEEEEESSCCSSCCCCTTC T ss_pred CCC-CCCCCCEECCCCCCCCCCCCCCC T ss_conf 436-89999315644567768719999 No 27 >d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=54.38 E-value=5.8 Score=16.89 Aligned_cols=54 Identities=13% Similarity=0.285 Sum_probs=40.1 Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 0678887420145421001112654356413689999998717877831222200 Q gi|254780625|r 152 NAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQN 206 (289) Q Consensus 152 ~~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN~y~~EiLf~a~I~P~~~~~~Ls~~ 206 (289) +.+.|.+ +=++..||..-|--=..++||||-++.+|+=.=+-.|+..-.+|++. T Consensus 96 ne~~FV~-FfN~A~pit~klH~leLLPGIGkk~~~~iveeR~~~~f~sf~dl~~r 149 (180) T d2i5ha1 96 DEKKYVD-FFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQR 149 (180) T ss_dssp THHHHHH-HHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHH T ss_pred CHHHHEE-EEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 9132100-32458744034688874345268999999999744898899999988 No 28 >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=38.98 E-value=10 Score=15.37 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=39.0 Q ss_pred CCCCCCHHHHHHHH-HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 43564136899999-9871787783122220010158999999998 Q gi|254780625|r 176 IVAGIGNIYVCEAL-WRAKLSPIRKTRSLIQNNGTPKDILYKLIQE 220 (289) Q Consensus 176 ~iaGIGN~y~~EiL-f~a~I~P~~~~~~Ls~~e~~~~~~~~~L~~~ 220 (289) .++|||-..|..|. |+...-|++...+|..-...+...++++.++ T Consensus 37 ~lpgig~~~A~~II~yR~~~G~f~sledL~~V~Gi~~k~~eki~k~ 82 (91) T d2edua1 37 SLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKA 82 (91) T ss_dssp HSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHC T ss_conf 4789899999999999998599788999800889899999999981 No 29 >d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]} Probab=31.29 E-value=7.9 Score=16.03 Aligned_cols=28 Identities=25% Similarity=0.599 Sum_probs=16.9 Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEECCCCC Q ss_conf 3877107877887899998781206387767 Q gi|254780625|r 258 KTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289) Q Consensus 258 r~g~~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289) |....| |+||.-|-.....+| ++|-.|. T Consensus 16 r~~k~C-P~CG~GvFmA~H~dR--~~CGKCg 43 (55) T d2k4xa1 16 RKHRFC-PRCGPGVFLAEHADR--YSCGRCG 43 (55) T ss_dssp CSSCCC-TTTTTTCCCEECSSE--EECTTTC T ss_pred EECCCC-CCCCCCEEEEECCCC--CCCCCCC T ss_conf 824749-599995774125897--6634775 No 30 >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Probab=30.16 E-value=11 Score=15.23 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=18.8 Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCCCCC Q ss_conf 71078778878999987812063877679 Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~CQk 289 (289) ..| |.|+..|.+. +|-..+-||.|+. T Consensus 19 k~C-P~C~~~~~~~--~~~~~~~C~~C~~ 44 (73) T d2ct7a1 19 LWC-AQCSFGFIYE--REQLEATCPQCHQ 44 (73) T ss_dssp ECC-SSSCCCEECC--CSCSCEECTTTCC T ss_pred CCC-CCCCCEEEEC--CCCCEEECCCCCC T ss_conf 899-9999976877--9999878699899 No 31 >d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]} Probab=27.27 E-value=7.1 Score=16.35 Aligned_cols=25 Identities=24% Similarity=0.717 Sum_probs=12.3 Q ss_pred CCCCCCCCCEEEEEEECCCCEEECCCCC Q ss_conf 7107877887899998781206387767 Q gi|254780625|r 261 EPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289) Q Consensus 261 ~~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289) .+| ..||..= ..+.+..-|.||.|- T Consensus 516 ~~C-~~Cg~~~--~~~~~~~~~~CP~CG 540 (561) T d1hk8a_ 516 DKC-FTCGSTH--EMTPTENGFVCSICG 540 (561) T ss_dssp EEE-TTTCCCS--CCEECSSSEECSSSC T ss_pred CCC-CCCCCCC--CCCCCCCCCCCCCCC T ss_conf 547-7888758--643577785293898 No 32 >d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=26.23 E-value=16 Score=14.02 Aligned_cols=25 Identities=24% Similarity=0.716 Sum_probs=18.4 Q ss_pred CCCCCCCC-CEEEEEEECCCCEEECCCCCC Q ss_conf 71078778-878999987812063877679 Q gi|254780625|r 261 EPCLSNCG-QMIRRIVQAGRSTFYCTYCQK 289 (289) Q Consensus 261 ~~C~~~CG-~~I~~~~~~gR~ty~Cp~CQk 289 (289) ..| |.|| ..+.+..+| +|-|..|-+ T Consensus 28 y~C-p~Cgk~~vkR~a~G---IW~C~kC~~ 53 (73) T d1jj2y_ 28 HKC-PVCGFKKLKRAGTG---IWMCGHCGY 53 (73) T ss_dssp BCC-SSSCCSCEEEEETT---EEEETTTCC T ss_pred CCC-CCCCCCCEEEEEEE---EEECCCCCC T ss_conf 649-88898822889988---888799998 No 33 >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=24.96 E-value=15 Score=14.34 Aligned_cols=24 Identities=17% Similarity=0.778 Sum_probs=10.0 Q ss_pred CCCCCCCEE---EEEEECCCCEEECCCCC Q ss_conf 078778878---99998781206387767 Q gi|254780625|r 263 CLSNCGQMI---RRIVQAGRSTFYCTYCQ 288 (289) Q Consensus 263 C~~~CG~~I---~~~~~~gR~ty~Cp~CQ 288 (289) | ++|++-| .+.. .+.+.|.|+-|+ T Consensus 16 C-~~C~ayiNP~~~~~-~~g~~w~C~~C~ 42 (85) T d1pd0a5 16 C-RRCRSYMNPFVTFI-EQGRRWRCNFCR 42 (85) T ss_dssp C-SSSCCBCCTTCEEE-TTTTEEECTTTC T ss_pred C-CCCCCEECCCEEEE-CCCCEEECCCCC T ss_conf 6-68748977723891-799999898888 No 34 >d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Probab=23.68 E-value=18 Score=13.72 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=13.8 Q ss_pred CCCCCCCCCEEEEEEE------CCCCEEECCCCC Q ss_conf 7107877887899998------781206387767 Q gi|254780625|r 261 EPCLSNCGQMIRRIVQ------AGRSTFYCTYCQ 288 (289) Q Consensus 261 ~~C~~~CG~~I~~~~~------~gR~ty~Cp~CQ 288 (289) ..| |+||+.=.-..+ .|.+-..|..|. T Consensus 165 ~~C-PvCGs~P~~s~l~~~~~~~G~R~l~C~~C~ 197 (290) T d2fiya1 165 TLC-PACGSPPMAGMIRQGGKETGLRYLSCSLCA 197 (290) T ss_dssp SSC-TTTCCCEEEEEEEC----CCEEEEEETTTC T ss_pred CCC-CCCCCCCHHHEEECCCCCCCCEEEECCCCC T ss_conf 969-999980211403236777885688789998 No 35 >d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Probab=21.95 E-value=11 Score=15.11 Aligned_cols=23 Identities=22% Similarity=0.694 Sum_probs=14.7 Q ss_pred CCCCCCCCEEEEEEECCCCEEECCCCC Q ss_conf 107877887899998781206387767 Q gi|254780625|r 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289) Q Consensus 262 ~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289) +| |.|+..- ++-....+.||.|. T Consensus 5 ~C-P~C~sey---tYedg~l~vCPeC~ 27 (38) T d2akla2 5 PC-PQCNSEY---TYEDGALLVCPECA 27 (38) T ss_dssp CC-TTTCCCC---CEECSSSEEETTTT T ss_pred CC-CCCCCCC---EECCCCEEECCCCC T ss_conf 68-8789803---57379997897555 No 36 >d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]} Probab=21.04 E-value=7.9 Score=16.03 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=20.9 Q ss_pred CCCCCCCCEEEEEEECCCCEEECCCC Q ss_conf 10787788789999878120638776 Q gi|254780625|r 262 PCLSNCGQMIRRIVQAGRSTFYCTYC 287 (289) Q Consensus 262 ~C~~~CG~~I~~~~~~gR~ty~Cp~C 287 (289) -| .+||.-|.-..+-.|.-|+=|.| T Consensus 10 ~C-dkCg~GIVG~~VK~rDk~rHPeC 34 (35) T d1x62a2 10 MC-DKCGTGIVGVFVKLRDRHRHPEC 34 (35) T ss_dssp CC-SSSCCCCCSSCEECSSCEECTTT T ss_pred CC-CCCCCCCEEEEEEECCCCCCCCC T ss_conf 13-53478717689984243578887 No 37 >d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Probab=20.75 E-value=6.9 Score=16.41 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=15.3 Q ss_pred CCCCCCCCCCEEEEEEECCCCEEEC Q ss_conf 7710787788789999878120638 Q gi|254780625|r 260 GEPCLSNCGQMIRRIVQAGRSTFYC 284 (289) Q Consensus 260 g~~C~~~CG~~I~~~~~~gR~ty~C 284 (289) -++| |.|+.+|++. +|-.-..| T Consensus 6 tK~C-P~C~~~ieK~--~GCnhM~C 27 (60) T d1wd2a_ 6 TKEC-PKCHVTIEKD--GGCNHMVC 27 (60) T ss_dssp CCCC-TTTCCCCSSC--CSCCSSSC T ss_pred CCCC-CCCCCEEEEC--CCCCCEEE T ss_conf 8598-7999968878--89887696 No 38 >d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Probab=20.63 E-value=21 Score=13.33 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=13.9 Q ss_pred CCCCCCCCEEEEEEECCCCEEECCCCC Q ss_conf 107877887899998781206387767 Q gi|254780625|r 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 (289) Q Consensus 262 ~C~~~CG~~I~~~~~~gR~ty~Cp~CQ 288 (289) .| ++||...+-..--. -||.|. T Consensus 10 ~C-~~CGyi~~g~~aP~----~CPvC~ 31 (44) T d1lkoa2 10 RC-RNCGYVHEGTGAPE----LCPACA 31 (44) T ss_dssp EE-TTTCCEEEEEECCS----BCTTTC T ss_pred EC-CCCCCEEECCCCCC----CCCCCC T ss_conf 83-88995877787987----687998 No 39 >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Probab=20.42 E-value=15 Score=14.19 Aligned_cols=10 Identities=0% Similarity=-0.004 Sum_probs=4.1 Q ss_pred EEEECCCCCC Q ss_conf 0111265435 Q gi|254780625|r 169 NALLNQKIVA 178 (289) Q Consensus 169 ~~LlDQ~~ia 178 (289) .-.++|-+.+ T Consensus 303 ~~~~~~w~~~ 312 (494) T d1h3na3 303 TDTMDTFFDS 312 (494) T ss_dssp CCEECHHHHT T ss_pred CEECCCCEEE T ss_conf 3114522000 Done!