RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
(289 letters)
>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A
{Escherichia coli} (A:125-262)
Length = 138
Score = 142 bits (360), Expect = 4e-35
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 142 LGPEPADNSFNAIYLTHQFHK---KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIR 198
+GP+ D + + + +N LL+Q +AG+GN E LW+ L+
Sbjct: 1 VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNH 60
Query: 199 KTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGK 258
K + L L L + ++ + G + H G V+ +
Sbjct: 61 KAKDL------NAAQLDALAHALLEIPRFSYATRGQVDENKHH-----GALFRFK-VFHR 108
Query: 259 TGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
GEPC CG +I + + R ++C CQ
Sbjct: 109 DGEPCE-RCGSIIEKTTLSSRPFYWCPGCQH 138
>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM,
FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A
{Lactococcus lactis} (A:137-272)
Length = 136
Score = 142 bits (359), Expect = 5e-35
Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 149 NSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNG 208
F+ + K +K LL Q +VAG+GNIYV E LW AK+ P ++T LI
Sbjct: 3 EDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLI---- 58
Query: 209 TPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCG 268
+ ++ L I ++L AI GGSS+R Y GS G QN VYGKTGE C CG
Sbjct: 59 --ESSIHLLHDSIIEILQKAIKLGGSSIRTY-SALGSTGKMQNELQVYGKTGEKCS-RCG 114
Query: 269 QMIRRIVQAGRSTFYCTYCQK 289
I++I AGR T +C CQ+
Sbjct: 115 AEIQKIKVAGRGTHFCPVCQQ 135
>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix,
zinc-LESS finger, hydrolase, THF, glycosidase, lyase,
multifunctional enzyme; HET: DNA 3DR; 2.20A
{Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
(A:144-289)
Length = 146
Score = 137 bits (347), Expect = 1e-33
Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 20/149 (13%)
Query: 155 YLTHQFHKKNSNLKNALLNQK-IVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDI 213
+ K + L++QK I +G+GN V E L+RAK+ P + +L
Sbjct: 2 IDISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNL------TDQE 55
Query: 214 LYKLIQEIQKVLIDAIDAGGSSL------------RDYVHIDGSIGYFQNAFSVYGKTGE 261
+ L I+ A D+ R H + + F VY K +
Sbjct: 56 IENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKD 115
Query: 262 PCL-SNCGQMIRRIVQAGRSTFYCTYCQK 289
P I + R+T++ QK
Sbjct: 116 PNGNKVIADKIIGSGKNKRTTYWAPAIQK 144
>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search,
base extrusion; HET: DNA 8OG; 1.62A {Geobacillus
stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A
2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A*
2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A*
1r2y_A* 3jr5_A* ... (A:133-256)
Length = 124
Score = 134 bits (339), Expect = 1e-32
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201
LGPEP +F+ L + K ++K LL+ +VAG GNIYV E+L+RA + P R
Sbjct: 1 LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAA 60
Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGE 261
S + +L +E+ + +A+ G L VYG+ G
Sbjct: 61 S------LSSKEIERLHEEMVATIGEAVMKGQHHLY-----------------VYGRQGN 97
Query: 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
PC CG I + V AGR T YC CQ+
Sbjct: 98 PCK-RCGTPIEKTVVAGRGTHYCPRCQR 124
>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM,
FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A
{Lactococcus lactis} (A:1-136)
Length = 136
Score = 133 bits (336), Expect = 3e-32
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60
MPELPEVE +RR L + + I + GK I +SRR KYL
Sbjct: 1 MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYL 60
Query: 61 LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120
+ E+ + +I HL M G + + +H+H+T+ + ++IY D R
Sbjct: 61 IFEIGDDFRLISHLRMEGKYRL----ATLDAPREKHDHLTMKFADG------QLIYADVR 110
Query: 121 RFGFMDLVETSLKYQYPPLRTLGPEP 146
+FG +L+ T Y + +GPEP
Sbjct: 111 KFGTWELISTDQVLPYFLKKKIGPEP 136
>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix,
zinc-LESS finger, hydrolase, THF, glycosidase, lyase,
multifunctional enzyme; HET: DNA 3DR; 2.20A
{Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
(A:1-143)
Length = 143
Score = 126 bits (317), Expect = 4e-30
Identities = 31/151 (20%), Positives = 46/151 (30%), Gaps = 11/151 (7%)
Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPH--HFSAATRGKKIIDVSRRAK 58
MPE PEV + L K T+ I P A K+ +V + K
Sbjct: 1 MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGK 60
Query: 59 YLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYND 118
+L EL + +F + K + +S N ++D
Sbjct: 61 FLWFELFDPNDKSNKWYIWNTFGLTGMWSLFEAK---YTRAVLSFDNEL-----MAYFSD 112
Query: 119 PRRFGFMDLVETSLKYQYPPLRTLGPEPADN 149
R FG + L LGP+ N
Sbjct: 113 MRNFGTFKFSNSEK-ELKRKLNELGPDFLKN 142
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix
two-turns helix, riken structural genomics/proteomics
initiative, RSGI; 1.90A {Thermus thermophilus HB8}
(A:1-120)
Length = 120
Score = 118 bits (298), Expect = 7e-28
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PELPEVE RR L ++ T+ + R + +A G++I++V RR K+LL
Sbjct: 1 PELPEVETTRRRLRPLVLGQTLRQV-----VHRDPARYRNTALAEGRRILEVDRRGKFLL 55
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
LEG + ++ HLGM+G F +E H + L + ++DPRR
Sbjct: 56 FALEGGVELVAHLGMTGGFRLEP---------TPHTRAALVLEGR------TLYFHDPRR 100
Query: 122 FGFMDLVETSLKYQYPPL 139
FG + V + P L
Sbjct: 101 FGRLFGVRRGDYREIPLL 118
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix,
zinc-LESS finger, hydrolase; 2.10A {Homo sapiens}
(A:156-364)
Length = 209
Score = 118 bits (296), Expect = 1e-27
Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 24/141 (17%)
Query: 163 KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSL--------------IQNNG 208
+ + ALL+Q+ GIGN E L+R K+ P K RS+ +
Sbjct: 2 FDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKI 61
Query: 209 TPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCG 268
K L++ V + + GG + F+ YG G L
Sbjct: 62 RTKLQNPDLLELCHSVPKEVVQLGGRGYGSESG-EEDFAAFRAWLRCYGMPGMSSL-QDR 119
Query: 269 QMIRRIVQAGRSTFYCTYCQK 289
GR+ ++
Sbjct: 120 --------HGRTIWFQGDPGP 132
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix,
zinc-LESS finger, hydrolase; 2.10A {Homo sapiens}
(A:1-133)
Length = 133
Score = 115 bits (289), Expect = 7e-27
Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 12/135 (8%)
Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRF-----DFPHHFSAATRGKKIIDVSR 55
MPE PE+ + + + + + R + + +A+ K + +
Sbjct: 1 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL 60
Query: 56 RAKYLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVI 115
+ L+++ GMSGSF + + P+H H+ + +
Sbjct: 61 SPLPGAQPQQEPLALVFRFGMSGSFQLVPRE-----ELPRHAHLRFYTAP--PGPRLALC 113
Query: 116 YNDPRRFGFMDLVET 130
+ D RRFG DL
Sbjct: 114 FVDIRRFGRWDLGGK 128
>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search,
base extrusion; HET: DNA 8OG; 1.62A {Geobacillus
stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A
2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A*
2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A*
1r2y_A* 3jr5_A* ... (A:1-132)
Length = 132
Score = 115 bits (288), Expect = 9e-27
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHR-KNLRFDF-PHHFSAATRGKKIIDVSRRAKY 59
PELPEVE IRR L+ ++ T+ D+ + +R F+A G+ + + RR K+
Sbjct: 1 PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60
Query: 60 LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119
L L+ + ++I HL M G + + + H HV T+ + + Y D
Sbjct: 61 LKFLLDRD-ALISHLRMEGRYAVAS-ALEPLEP---HTHVVFCFTDGS-----ELRYRDV 110
Query: 120 RRFGFMDLVETSLKYQYPPL 139
R+FG M + + PPL
Sbjct: 111 RKFGTMHVYAKEEADRRPPL 130
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex,
DNA repair, beta sandwich, zinc finger, helix two-turns
helix, hydrolase/DNA complex; HET: PED; 2.10A
{Escherichia coli} (A:129-225)
Length = 97
Score = 115 bits (289), Expect = 9e-27
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202
GPEP + FN YL + KK + +K L++ K+V G+GNIY E+L+ A + P R S
Sbjct: 1 GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASS 60
Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDG 244
L L + I+ VL+ +I+ GG++L+D++ DG
Sbjct: 61 L------SLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDG 96
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix
two-turns helix, riken structural genomics/proteomics
initiative, RSGI; 1.90A {Thermus thermophilus HB8}
(A:121-219)
Length = 99
Score = 110 bits (276), Expect = 3e-25
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201
LGPEP +F + LK LL+Q++ AG+GNIY EAL+RA+LSP R R
Sbjct: 1 LGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPAR 60
Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD--YVHIDG 244
SL ++ +L + +++VL +A++ GGS+L D Y DG
Sbjct: 61 SL------TEEEARRLYRALREVLAEAVELGGSTLSDQSYRQPDG 99
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex,
DNA repair, beta sandwich, zinc finger, helix two-turns
helix, hydrolase/DNA complex; HET: PED; 2.10A
{Escherichia coli} (A:1-128)
Length = 128
Score = 109 bits (273), Expect = 5e-25
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PELPEVE RR + + T+ + LR+ + ++ V RRAKYLL
Sbjct: 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVS-EEIYRLSDQPVLSVQRRAKYLL 59
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
+EL II+HLGMSGS + + +H+HV + ++N + Y DPRR
Sbjct: 60 LELP-EGWIIIHLGMSGSL----RILPEELPPEKHDHVDLVMSNGK-----VLRYTDPRR 109
Query: 122 FGFMDLVET 130
FG +
Sbjct: 110 FGAWLWTKE 118
>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A
{Escherichia coli} (A:1-124)
Length = 124
Score = 104 bits (261), Expect = 1e-23
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
PE PE+ NL +K +TD+ F + + G+ + V R K LL
Sbjct: 1 PEGPEIRRAADNLEAAIKGKPLTDV-----WFAFPQLKTYQSQLIGQHVTHVETRGKALL 55
Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
+L++ H + G + + + +P + + L
Sbjct: 56 THFSNDLTLYSHNQLYGVWRV-VDTGEEPQT---TRVLRVKLQTADK-------TILLYS 104
Query: 122 FGFMDLVETSLKYQYPPLR 140
++++ +P L+
Sbjct: 105 ASDIEMLRPEQLTTHPFLQ 123
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} (A:230-311)
Length = 82
Score = 79.0 bits (195), Expect = 6e-16
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201
+ P P + + + + IG+ + L A L P +K +
Sbjct: 1 VKPHPYG--VDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVK 58
Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAID 230
+L ++ + +L++ +K
Sbjct: 59 NL------TEEEITRLVETFKKYEDFRSP 81
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex,
DNA repair, beta sandwich, zinc finger, helix two-turns
helix, hydrolase/DNA complex; HET: PED; 2.10A
{Escherichia coli} (A:226-268)
Length = 43
Score = 75.1 bits (185), Expect = 9e-15
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
GYF VYG+ GEPC CG I A R+TFYC CQK
Sbjct: 2 GYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 43
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix
two-turns helix, riken structural genomics/proteomics
initiative, RSGI; 1.90A {Thermus thermophilus HB8}
(A:220-266)
Length = 47
Score = 74.3 bits (183), Expect = 2e-14
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
G FQ +VYG+ G PC CG+ + R V AGR T +C CQ
Sbjct: 3 GGFQTRHAVYGREGLPCP-ACGRPVERRVVAGRGTHFCPTCQG 44
>3d4r_A Domain of unknown function from the PFAM-B_34464 family;
NP_987166.1, structural genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.20A
{Methanococcus maripaludis} (A:1-98)
Length = 98
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 112 YRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142
Y+VIY+D ++ +D ++ + QYP TL
Sbjct: 63 YQVIYDDLAKYXSLDTLKKDVLIQYPDKHTL 93
>2jh1_A MIC1, micronemal protein 1; cell adhesion, microneme, MAR
domain, cell invasion; 1.90A {Toxoplasma gondii} PDB:
2jh7_A* 2jhd_A* 3f53_A* 3f5a_A* 3f5e_A* (A:1-127)
Length = 127
Score = 28.0 bits (62), Expect = 1.5
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIR-RIVQAGRSTFYCT 285
S G C+ +CG I +++ + T
Sbjct: 71 DTASLLESNQENNGVNCVDDCGHTIPCPGGVHRQNSNHAT 110
>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion,
zinc, core protein, RNA-binding, icosaderal virus; 3.80A
{Rotavirus A} (A:102-180,A:753-767)
Length = 94
Score = 27.7 bits (61), Expect = 2.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 146 PADNSFNAIYLTHQFHKKNS 165
P D +FN +L HQF +NS
Sbjct: 66 PIDYAFNEYFLQHQFDFRNS 85
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme;
structural genomics, NYSGXRC, target 9440A, enolase
superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
(A:1-127,A:364-371)
Length = 135
Score = 26.6 bits (58), Expect = 3.7
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 18 MKNMTVTDICLHRKNLRFDFPHHFSAATR 46
M ++ + I + + +L + ++ +A R
Sbjct: 1 MSDLKIARIDVFQVDLPYSGGVYYLSAGR 29
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme,
muconolactone binding, structural genomics, PSI-2; HET:
MUC; 1.70A {Pseudomonas fluorescens pf-5} PDB: 3ct2_A*
3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
(A:1-129,A:360-382)
Length = 152
Score = 26.7 bits (58), Expect = 3.7
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATR 46
M + + I +L PH + T
Sbjct: 1 MSLHASAIESIETIIVDLPTIRPHKLAMHTM 31
>2vea_A Phytochrome-like protein CPH1; arginine finger,
phosphorylation, tandem GAF domain, knot, kinase,
receptor, PAS domain, chromophore; HET: CYC; 2.21A
{Synechocystis SP} (A:333-443,A:488-520)
Length = 144
Score = 26.4 bits (58), Expect = 4.1
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 20/80 (25%)
Query: 220 EIQKVLID----------AIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQ 269
E + VL+D + L G+ F + G+T + +
Sbjct: 1 EHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDE------K 54
Query: 270 MIRRIVQ----AGRSTFYCT 285
++ ++Q + T
Sbjct: 55 AVQYLLQWLENREVQDVFFT 74
>3cyj_A Mandelate racemase/muconate lactonizing enzyme- like
protein; structural genomics, isomerase, PSI-2; 2.30A
{Rubrobacter xylanophilus dsm 9941} (A:1-124,A:356-372)
Length = 141
Score = 26.6 bits (58), Expect = 4.3
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATRG 47
M + V + + + D+P
Sbjct: 1 MSLSGPRVERLEVSAYTVPTDYPESDGTLQWD 32
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:389-434,A:733-794)
Length = 108
Score = 26.3 bits (58), Expect = 5.3
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 30 RKNLRFDFP 38
R N++ DFP
Sbjct: 100 RANIQLDFP 108
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding
protein, gene regulation; 2.90A {Aquifex aeolicus VF5}
(A:319-349,A:463-492)
Length = 61
Score = 25.8 bits (56), Expect = 6.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 156 LTHQFHKKNSNLKNALLN--QKIVAGIGNI 183
L F KKN NLK LLN ++++A GNI
Sbjct: 24 LCRPFVKKNENLKFVLLNVAEQVLAKTGNI 53
>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase
(O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A
{Influenza a virus} (A:1-96,A:321-388)
Length = 164
Score = 25.6 bits (56), Expect = 9.0
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 75 GMSGSFIIEHTSCAKP 90
G SG F +E SC
Sbjct: 100 GYSGIFSVEGKSCINR 115
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.138 0.413
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,272,448
Number of extensions: 103001
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 29
Length of query: 289
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 201
Effective length of database: 1,981,209
Effective search space: 398223009
Effective search space used: 398223009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)