RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] (289 letters) >1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} (A:125-262) Length = 138 Score = 142 bits (360), Expect = 4e-35 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 16/151 (10%) Query: 142 LGPEPADNSFNAIYLTHQFHK---KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIR 198 +GP+ D + + + +N LL+Q +AG+GN E LW+ L+ Sbjct: 1 VGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNH 60 Query: 199 KTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGK 258 K + L L L + ++ + G + H G V+ + Sbjct: 61 KAKDL------NAAQLDALAHALLEIPRFSYATRGQVDENKHH-----GALFRFK-VFHR 108 Query: 259 TGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 GEPC CG +I + + R ++C CQ Sbjct: 109 DGEPCE-RCGSIIEKTTLSSRPFYWCPGCQH 138 >1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:137-272) Length = 136 Score = 142 bits (359), Expect = 5e-35 Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 149 NSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNG 208 F+ + K +K LL Q +VAG+GNIYV E LW AK+ P ++T LI Sbjct: 3 EDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLI---- 58 Query: 209 TPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCG 268 + ++ L I ++L AI GGSS+R Y GS G QN VYGKTGE C CG Sbjct: 59 --ESSIHLLHDSIIEILQKAIKLGGSSIRTY-SALGSTGKMQNELQVYGKTGEKCS-RCG 114 Query: 269 QMIRRIVQAGRSTFYCTYCQK 289 I++I AGR T +C CQ+ Sbjct: 115 AEIQKIKVAGRGTHFCPVCQQ 135 >3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A (A:144-289) Length = 146 Score = 137 bits (347), Expect = 1e-33 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 20/149 (13%) Query: 155 YLTHQFHKKNSNLKNALLNQK-IVAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDI 213 + K + L++QK I +G+GN V E L+RAK+ P + +L Sbjct: 2 IDISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNL------TDQE 55 Query: 214 LYKLIQEIQKVLIDAIDAGGSSL------------RDYVHIDGSIGYFQNAFSVYGKTGE 261 + L I+ A D+ R H + + F VY K + Sbjct: 56 IENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKD 115 Query: 262 PCL-SNCGQMIRRIVQAGRSTFYCTYCQK 289 P I + R+T++ QK Sbjct: 116 PNGNKVIADKIIGSGKNKRTTYWAPAIQK 144 >3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:133-256) Length = 124 Score = 134 bits (339), Expect = 1e-32 Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 24/148 (16%) Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201 LGPEP +F+ L + K ++K LL+ +VAG GNIYV E+L+RA + P R Sbjct: 1 LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAA 60 Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGE 261 S + +L +E+ + +A+ G L VYG+ G Sbjct: 61 S------LSSKEIERLHEEMVATIGEAVMKGQHHLY-----------------VYGRQGN 97 Query: 262 PCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 PC CG I + V AGR T YC CQ+ Sbjct: 98 PCK-RCGTPIEKTVVAGRGTHYCPRCQR 124 >1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:1-136) Length = 136 Score = 133 bits (336), Expect = 3e-32 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 10/146 (6%) Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60 MPELPEVE +RR L + + I + GK I +SRR KYL Sbjct: 1 MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYL 60 Query: 61 LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120 + E+ + +I HL M G + + +H+H+T+ + ++IY D R Sbjct: 61 IFEIGDDFRLISHLRMEGKYRL----ATLDAPREKHDHLTMKFADG------QLIYADVR 110 Query: 121 RFGFMDLVETSLKYQYPPLRTLGPEP 146 +FG +L+ T Y + +GPEP Sbjct: 111 KFGTWELISTDQVLPYFLKKKIGPEP 136 >3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A (A:1-143) Length = 143 Score = 126 bits (317), Expect = 4e-30 Identities = 31/151 (20%), Positives = 46/151 (30%), Gaps = 11/151 (7%) Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPH--HFSAATRGKKIIDVSRRAK 58 MPE PEV + L K T+ I P A K+ +V + K Sbjct: 1 MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGK 60 Query: 59 YLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYND 118 +L EL + +F + K + +S N ++D Sbjct: 61 FLWFELFDPNDKSNKWYIWNTFGLTGMWSLFEAK---YTRAVLSFDNEL-----MAYFSD 112 Query: 119 PRRFGFMDLVETSLKYQYPPLRTLGPEPADN 149 R FG + L LGP+ N Sbjct: 113 MRNFGTFKFSNSEK-ELKRKLNELGPDFLKN 142 >1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} (A:1-120) Length = 120 Score = 118 bits (298), Expect = 7e-28 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 20/138 (14%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PELPEVE RR L ++ T+ + R + +A G++I++V RR K+LL Sbjct: 1 PELPEVETTRRRLRPLVLGQTLRQV-----VHRDPARYRNTALAEGRRILEVDRRGKFLL 55 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 LEG + ++ HLGM+G F +E H + L + ++DPRR Sbjct: 56 FALEGGVELVAHLGMTGGFRLEP---------TPHTRAALVLEGR------TLYFHDPRR 100 Query: 122 FGFMDLVETSLKYQYPPL 139 FG + V + P L Sbjct: 101 FGRLFGVRRGDYREIPLL 118 >1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} (A:156-364) Length = 209 Score = 118 bits (296), Expect = 1e-27 Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 24/141 (17%) Query: 163 KNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSL--------------IQNNG 208 + + ALL+Q+ GIGN E L+R K+ P K RS+ + Sbjct: 2 FDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKI 61 Query: 209 TPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCG 268 K L++ V + + GG + F+ YG G L Sbjct: 62 RTKLQNPDLLELCHSVPKEVVQLGGRGYGSESG-EEDFAAFRAWLRCYGMPGMSSL-QDR 119 Query: 269 QMIRRIVQAGRSTFYCTYCQK 289 GR+ ++ Sbjct: 120 --------HGRTIWFQGDPGP 132 >1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} (A:1-133) Length = 133 Score = 115 bits (289), Expect = 7e-27 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 12/135 (8%) Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRF-----DFPHHFSAATRGKKIIDVSR 55 MPE PE+ + + + + + R + + +A+ K + + Sbjct: 1 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL 60 Query: 56 RAKYLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVI 115 + L+++ GMSGSF + + P+H H+ + + Sbjct: 61 SPLPGAQPQQEPLALVFRFGMSGSFQLVPRE-----ELPRHAHLRFYTAP--PGPRLALC 113 Query: 116 YNDPRRFGFMDLVET 130 + D RRFG DL Sbjct: 114 FVDIRRFGRWDLGGK 128 >3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... (A:1-132) Length = 132 Score = 115 bits (288), Expect = 9e-27 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHR-KNLRFDF-PHHFSAATRGKKIIDVSRRAKY 59 PELPEVE IRR L+ ++ T+ D+ + +R F+A G+ + + RR K+ Sbjct: 1 PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60 Query: 60 LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119 L L+ + ++I HL M G + + + H HV T+ + + Y D Sbjct: 61 LKFLLDRD-ALISHLRMEGRYAVAS-ALEPLEP---HTHVVFCFTDGS-----ELRYRDV 110 Query: 120 RRFGFMDLVETSLKYQYPPL 139 R+FG M + + PPL Sbjct: 111 RKFGTMHVYAKEEADRRPPL 130 >1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} (A:129-225) Length = 97 Score = 115 bits (289), Expect = 9e-27 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%) Query: 143 GPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTRS 202 GPEP + FN YL + KK + +K L++ K+V G+GNIY E+L+ A + P R S Sbjct: 1 GPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASS 60 Query: 203 LIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDG 244 L L + I+ VL+ +I+ GG++L+D++ DG Sbjct: 61 L------SLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDG 96 >1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} (A:121-219) Length = 99 Score = 110 bits (276), Expect = 3e-25 Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 8/105 (7%) Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201 LGPEP +F + LK LL+Q++ AG+GNIY EAL+RA+LSP R R Sbjct: 1 LGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPAR 60 Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD--YVHIDG 244 SL ++ +L + +++VL +A++ GGS+L D Y DG Sbjct: 61 SL------TEEEARRLYRALREVLAEAVELGGSTLSDQSYRQPDG 99 >1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} (A:1-128) Length = 128 Score = 109 bits (273), Expect = 5e-25 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 11/129 (8%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PELPEVE RR + + T+ + LR+ + ++ V RRAKYLL Sbjct: 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVS-EEIYRLSDQPVLSVQRRAKYLL 59 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 +EL II+HLGMSGS + + +H+HV + ++N + Y DPRR Sbjct: 60 LELP-EGWIIIHLGMSGSL----RILPEELPPEKHDHVDLVMSNGK-----VLRYTDPRR 109 Query: 122 FGFMDLVET 130 FG + Sbjct: 110 FGAWLWTKE 118 >1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} (A:1-124) Length = 124 Score = 104 bits (261), Expect = 1e-23 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 16/139 (11%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PE PE+ NL +K +TD+ F + + G+ + V R K LL Sbjct: 1 PEGPEIRRAADNLEAAIKGKPLTDV-----WFAFPQLKTYQSQLIGQHVTHVETRGKALL 55 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 +L++ H + G + + + +P + + L Sbjct: 56 THFSNDLTLYSHNQLYGVWRV-VDTGEEPQT---TRVLRVKLQTADK-------TILLYS 104 Query: 122 FGFMDLVETSLKYQYPPLR 140 ++++ +P L+ Sbjct: 105 ASDIEMLRPEQLTTHPFLQ 123 >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} (A:230-311) Length = 82 Score = 79.0 bits (195), Expect = 6e-16 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 8/89 (8%) Query: 142 LGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKLSPIRKTR 201 + P P + + + + IG+ + L A L P +K + Sbjct: 1 VKPHPYG--VDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVK 58 Query: 202 SLIQNNGTPKDILYKLIQEIQKVLIDAID 230 +L ++ + +L++ +K Sbjct: 59 NL------TEEEITRLVETFKKYEDFRSP 81 >1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} (A:226-268) Length = 43 Score = 75.1 bits (185), Expect = 9e-15 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 GYF VYG+ GEPC CG I A R+TFYC CQK Sbjct: 2 GYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 43 >1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} (A:220-266) Length = 47 Score = 74.3 bits (183), Expect = 2e-14 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 G FQ +VYG+ G PC CG+ + R V AGR T +C CQ Sbjct: 3 GGFQTRHAVYGREGLPCP-ACGRPVERRVVAGRGTHFCPTCQG 44 >3d4r_A Domain of unknown function from the PFAM-B_34464 family; NP_987166.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Methanococcus maripaludis} (A:1-98) Length = 98 Score = 28.3 bits (63), Expect = 1.2 Identities = 11/31 (35%), Positives = 19/31 (61%) Query: 112 YRVIYNDPRRFGFMDLVETSLKYQYPPLRTL 142 Y+VIY+D ++ +D ++ + QYP TL Sbjct: 63 YQVIYDDLAKYXSLDTLKKDVLIQYPDKHTL 93 >2jh1_A MIC1, micronemal protein 1; cell adhesion, microneme, MAR domain, cell invasion; 1.90A {Toxoplasma gondii} PDB: 2jh7_A* 2jhd_A* 3f53_A* 3f5a_A* 3f5e_A* (A:1-127) Length = 127 Score = 28.0 bits (62), Expect = 1.5 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%) Query: 247 GYFQNAFSVYGKTGEPCLSNCGQMIR-RIVQAGRSTFYCT 285 S G C+ +CG I +++ + T Sbjct: 71 DTASLLESNQENNGVNCVDDCGHTIPCPGGVHRQNSNHAT 110 >3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc, core protein, RNA-binding, icosaderal virus; 3.80A {Rotavirus A} (A:102-180,A:753-767) Length = 94 Score = 27.7 bits (61), Expect = 2.0 Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 146 PADNSFNAIYLTHQFHKKNS 165 P D +FN +L HQF +NS Sbjct: 66 PIDYAFNEYFLQHQFDFRNS 85 >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} (A:1-127,A:364-371) Length = 135 Score = 26.6 bits (58), Expect = 3.7 Identities = 5/29 (17%), Positives = 15/29 (51%) Query: 18 MKNMTVTDICLHRKNLRFDFPHHFSAATR 46 M ++ + I + + +L + ++ +A R Sbjct: 1 MSDLKIARIDVFQVDLPYSGGVYYLSAGR 29 >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens pf-5} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A (A:1-129,A:360-382) Length = 152 Score = 26.7 bits (58), Expect = 3.7 Identities = 6/31 (19%), Positives = 10/31 (32%) Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATR 46 M + + I +L PH + T Sbjct: 1 MSLHASAIESIETIIVDLPTIRPHKLAMHTM 31 >2vea_A Phytochrome-like protein CPH1; arginine finger, phosphorylation, tandem GAF domain, knot, kinase, receptor, PAS domain, chromophore; HET: CYC; 2.21A {Synechocystis SP} (A:333-443,A:488-520) Length = 144 Score = 26.4 bits (58), Expect = 4.1 Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 20/80 (25%) Query: 220 EIQKVLID----------AIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQ 269 E + VL+D + L G+ F + G+T + + Sbjct: 1 EHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDE------K 54 Query: 270 MIRRIVQ----AGRSTFYCT 285 ++ ++Q + T Sbjct: 55 AVQYLLQWLENREVQDVFFT 74 >3cyj_A Mandelate racemase/muconate lactonizing enzyme- like protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} (A:1-124,A:356-372) Length = 141 Score = 26.6 bits (58), Expect = 4.3 Identities = 4/32 (12%), Positives = 9/32 (28%) Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATRG 47 M + V + + + D+P Sbjct: 1 MSLSGPRVERLEVSAYTVPTDYPESDGTLQWD 32 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:389-434,A:733-794) Length = 108 Score = 26.3 bits (58), Expect = 5.3 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 30 RKNLRFDFP 38 R N++ DFP Sbjct: 100 RANIQLDFP 108 >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus VF5} (A:319-349,A:463-492) Length = 61 Score = 25.8 bits (56), Expect = 6.1 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Query: 156 LTHQFHKKNSNLKNALLN--QKIVAGIGNI 183 L F KKN NLK LLN ++++A GNI Sbjct: 24 LCRPFVKKNENLKFVLLNVAEQVLAKTGNI 53 >1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:1-96,A:321-388) Length = 164 Score = 25.6 bits (56), Expect = 9.0 Identities = 7/16 (43%), Positives = 8/16 (50%) Query: 75 GMSGSFIIEHTSCAKP 90 G SG F +E SC Sbjct: 100 GYSGIFSVEGKSCINR 115 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.138 0.413 Gapped Lambda K H 0.267 0.0554 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,272,448 Number of extensions: 103001 Number of successful extensions: 311 Number of sequences better than 10.0: 1 Number of HSP's gapped: 276 Number of HSP's successfully gapped: 29 Length of query: 289 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 201 Effective length of database: 1,981,209 Effective search space: 398223009 Effective search space used: 398223009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.0 bits)