RPSBLAST alignment of GI: 254780625 and protein with PDBid: 1k82

>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 268
 Score =  231 bits (590), Expect = 1e-61
 Identities = 104/288 (36%), Positives = 145/288 (50%), Gaps = 20/288 (6%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
           PELPEVE  RR +   +   T+    +    LR+            + ++ V RRAKYLL
Sbjct: 1   PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEI-YRLSDQPVLSVQRRAKYLL 59

Query: 62  IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
           +EL     II+HLGMSGS  I            +H+HV + ++N        + Y DPRR
Sbjct: 60  LELPEG-WIIIHLGMSGSLRILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRR 109

Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIG 181
           FG     +      +  L  LGPEP  + FN  YL  +  KK + +K  L++ K+V G+G
Sbjct: 110 FGAWLWTKE--LEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVG 167

Query: 182 NIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVH 241
           NIY  E+L+ A + P R   SL             L + I+ VL+ +I+ GG++L+D++ 
Sbjct: 168 NIYASESLFAAGIHPDRLASSL------SLAECELLARVIKAVLLRSIEQGGTTLKDFLQ 221

Query: 242 IDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
            DG  GYF     VYG+ GEPC   CG  I     A R+TFYC  CQK
Sbjct: 222 SDGKPGYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 268