RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] (289 letters) >1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 266 Score = 270 bits (692), Expect = 2e-73 Identities = 104/290 (35%), Positives = 150/290 (51%), Gaps = 29/290 (10%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PELPEVE RR L ++ T+ + R + +A G++I++V RR K+LL Sbjct: 1 PELPEVETTRRRLRPLVLGQTLRQV-----VHRDPARYRNTALAEGRRILEVDRRGKFLL 55 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 LEG + ++ HLGM+G F +E H + L T + ++DPRR Sbjct: 56 FALEGGVELVAHLGMTGGFRLE---------PTPHTRAALVLEGRT------LYFHDPRR 100 Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIG 181 FG + V + P L LGPEP +F + LK LL+Q++ AG+G Sbjct: 101 FGRLFGVRRGDYREIPLLLRLGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVG 160 Query: 182 NIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD--Y 239 NIY EAL+RA+LSP R RSL ++ +L + +++VL +A++ GGS+L D Y Sbjct: 161 NIYADEALFRARLSPFRPARSL------TEEEARRLYRALREVLAEAVELGGSTLSDQSY 214 Query: 240 VHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 DG G FQ +VYG+ G PC CG+ + R V AGR T +C CQ Sbjct: 215 RQPDGLPGGFQTRHAVYGREGLPCP-ACGRPVERRVVAGRGTHFCPTCQG 263 >1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 268 Score = 231 bits (590), Expect = 1e-61 Identities = 104/288 (36%), Positives = 145/288 (50%), Gaps = 20/288 (6%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PELPEVE RR + + T+ + LR+ + ++ V RRAKYLL Sbjct: 1 PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEI-YRLSDQPVLSVQRRAKYLL 59 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 +EL II+HLGMSGS I +H+HV + ++N + Y DPRR Sbjct: 60 LELPEG-WIIIHLGMSGSLRILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRR 109 Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIG 181 FG + + L LGPEP + FN YL + KK + +K L++ K+V G+G Sbjct: 110 FGAWLWTKE--LEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVG 167 Query: 182 NIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVH 241 NIY E+L+ A + P R SL L + I+ VL+ +I+ GG++L+D++ Sbjct: 168 NIYASESLFAAGIHPDRLASSL------SLAECELLARVIKAVLLRSIEQGGTTLKDFLQ 221 Query: 242 IDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 DG GYF VYG+ GEPC CG I A R+TFYC CQK Sbjct: 222 SDGKPGYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 268 >1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Length = 364 Score = 193 bits (490), Expect = 5e-50 Identities = 61/313 (19%), Positives = 97/313 (30%), Gaps = 50/313 (15%) Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60 MPE PE+ + + + + + R I S R K L Sbjct: 1 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPF----ESSAYRISASARGKEL 56 Query: 61 LIELEG---------NLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKK 111 + L L+++ GMSGSF + P+H H+ Sbjct: 57 RLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREEL-----PRHAHLRFYTAPPGPRLA 111 Query: 112 YRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHK-KNSNLKNA 170 + D RRFG DL + P F L + K + + A Sbjct: 112 LC--FVDIRRFGRWDLGGKWQPGRGPC-----VLQEYQQFRESVLRNLADKAFDRPICEA 164 Query: 171 LLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQ--------------NNGTPKDILYK 216 LL+Q+ GIGN E L+R K+ P K RS+++ K Sbjct: 165 LLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPD 224 Query: 217 LIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQ 276 L++ V + + GG + F+ YG G L + + Sbjct: 225 LLELCHSVPKEVVQLGGRGYGSESGEEDF-AAFRAWLRCYGMPGMSSLQD---------R 274 Query: 277 AGRSTFYCTYCQK 289 GR+ ++ Sbjct: 275 HGRTIWFQGDPGP 287 >1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A* Length = 262 Score = 189 bits (481), Expect = 5e-49 Identities = 58/290 (20%), Positives = 107/290 (36%), Gaps = 32/290 (11%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61 PE PE+ NL +K +TD+ L+ + + G+ + V R K LL Sbjct: 1 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKT-----YQSQLIGQHVTHVETRGKALL 55 Query: 62 IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121 +L++ H + G + + T + + V + + T Sbjct: 56 THFSNDLTLYSHNQLYGVWRVVDTGE--EPQTTRVLRVKLQTADKTI---------LLYS 104 Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHK---KNSNLKNALLNQKIVA 178 ++++ +P L+ +GP+ D + + + +N LL+Q +A Sbjct: 105 ASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLA 164 Query: 179 GIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD 238 G+GN E LW+ L+ K + L L + ++ + G + Sbjct: 165 GLGNYLRVEILWQVGLTGNHKAKDLNAAQL------DALAHALLEIPRFSYATRGQVDEN 218 Query: 239 YVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288 H G F V+ + GEPC CG +I + + R ++C CQ Sbjct: 219 KHH-----GALFR-FKVFHRDGEPCE-RCGSIIEKTTLSSRPFYWCPGCQ 261 >3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A Length = 289 Score = 180 bits (458), Expect = 3e-46 Identities = 62/304 (20%), Positives = 102/304 (33%), Gaps = 32/304 (10%) Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGK--KIIDVSRRAK 58 MPE PEV + L K T+ I P + K+ +V + K Sbjct: 1 MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGK 60 Query: 59 YLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYND 118 +L EL + +F + + ++ +S N ++D Sbjct: 61 FLWFELFDPNDKSNKWYIWNTFGLTGM---WSLFEAKYTRAVLSFDNEL-----MAYFSD 112 Query: 119 PRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVA 178 R FG + K L LGP+ N I ++ + + + +KI + Sbjct: 113 MRNFGTFKFSNSE-KELKRKLNELGPDFLKNDDIDISKIKKYKQP--IVALLMDQKKIGS 169 Query: 179 GIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGG----S 234 G+GN V E L+RAK+ P + +L + L I+ A D+ Sbjct: 170 GLGNYLVAEILYRAKIDPHKLGSNL------TDQEIENLWYWIKYETKLAYDSNHIGYMV 223 Query: 235 SLRDYVHIDGSIGYFQNA--------FSVYGKTGEPCL-SNCGQMIRRIVQAGRSTFYCT 285 +L + G Y N F VY K +P I + R+T++ Sbjct: 224 NLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAP 283 Query: 286 YCQK 289 QK Sbjct: 284 AIQK 287 >1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1pji_A* 1pm5_A* 1xc8_A* 3c58_A* 1nnj_A 1kfv_A 1pjj_A* Length = 272 Score = 163 bits (412), Expect = 5e-41 Identities = 98/289 (33%), Positives = 137/289 (47%), Gaps = 18/289 (6%) Query: 1 MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60 MPELPEVE +RR L + + I + GK I +SRR KYL Sbjct: 1 MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYL 60 Query: 61 LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120 + E+ + +I HL M G + + + + ++IY D R Sbjct: 61 IFEIGDDFRLISHLRMEGKYRLATLDAPREKHDHLTMK----------FADGQLIYADVR 110 Query: 121 RFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGI 180 +FG +L+ T Y + +GPEP F+ + K +K LL Q +VAG+ Sbjct: 111 KFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGL 170 Query: 181 GNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240 GNIYV E LW AK+ P ++T LI+++ + L I ++L AI GGSS+R Y Sbjct: 171 GNIYVDEVLWLAKIHPEKETNQLIESSI------HLLHDSIIEILQKAIKLGGSSIRTY- 223 Query: 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 GS G QN VYGKTGE C CG I++I AGR T +C CQ+ Sbjct: 224 SALGSTGKMQNELQVYGKTGEKCS-RCGAEIQKIKVAGRGTHFCPVCQQ 271 >3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base extrusion; HET: DNA 8OG; 1.62A {Geobacillus stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A 2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A* 2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A* 1r2y_A* 3jr5_A* ... Length = 256 Score = 136 bits (342), Expect = 7e-33 Identities = 90/290 (31%), Positives = 132/290 (45%), Gaps = 36/290 (12%) Query: 2 PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL--RFDFPHHFSAATRGKKIIDVSRRAKY 59 PELPEVE IRR L+ ++ T+ D+ + N+ F+A G+ + + RR K+ Sbjct: 1 PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60 Query: 60 LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119 L L ++I HL M G + + H HV T+ + + Y D Sbjct: 61 LKF-LLDRDALISHLRMEGRYAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDV 110 Query: 120 RRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAG 179 R+FG M + + PPL LGPEP +F+ L + K ++K LL+ +VAG Sbjct: 111 RKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAG 170 Query: 180 IGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDY 239 GNIYV E+L+RA + P R SL +L +E+ + +A+ G Sbjct: 171 FGNIYVDESLFRAGILPGRPAASLSSKEI------ERLHEEMVATIGEAVMKG------- 217 Query: 240 VHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289 Q+ VYG+ G PC CG I + V AGR T YC CQ+ Sbjct: 218 ----------QHHLYVYGRQGNPCK-RCGTPIEKTVVAGRGTHYCPRCQR 256 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 53.4 bits (128), Expect = 6e-08 Identities = 47/259 (18%), Positives = 77/259 (29%), Gaps = 104/259 (40%) Query: 65 EGN----LSIIVHLGMSGSFIIEHTSCAKPIK--N---PQHNHVTISLTNNTNTKKYRVI 115 EG LSI ++ + ++ + N P V ISL N Sbjct: 332 EGVPSPMLSIS---NLTQEQVQDY------VNKTNSHLPAGKQVEISLVNG--------- 373 Query: 116 YNDPRRFGFMDLVETSLKYQYPP---------LRTLG-PEPADNS---FN--AIYLTHQ- 159 + V + PP LR P D S F+ + +++ Sbjct: 374 ---AKNL-----VVSG-----PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420 Query: 160 ------FHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAK-LS-PIRKTRSLIQNNGTPK 211 FH + L A + I + V + AK + P+ T +G Sbjct: 421 LPVASPFH--SHLLVPA--SDLINKDLVKNNVS---FNAKDIQIPVYDTF-----DG--S 466 Query: 212 DILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNA--FS-----VYGKTGEPCL 264 D L L I + ++D I +R V ++ F +G G L Sbjct: 467 D-LRVLSGSISERIVDCI------IRLPVK-------WETTTQFKATHILDFGPGGASGL 512 Query: 265 SNCGQMIR-----RIVQAG 278 + R++ AG Sbjct: 513 GVLTHRNKDGTGVRVIVAG 531 >1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A* Length = 566 Score = 33.6 bits (76), Expect = 0.053 Identities = 6/38 (15%), Positives = 16/38 (42%) Query: 200 TRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLR 237 R +Q + + + ++ + + V + +A G R Sbjct: 140 DRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPR 177 >1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron reduction, phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A* Length = 497 Score = 32.1 bits (72), Expect = 0.14 Identities = 9/38 (23%), Positives = 15/38 (39%) Query: 200 TRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLR 237 R Q +G K + + Q + V +DA+ R Sbjct: 43 NRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNR 80 >2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 Length = 608 Score = 31.7 bits (71), Expect = 0.20 Identities = 8/38 (21%), Positives = 20/38 (52%) Query: 200 TRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLR 237 TR Q G + ++I+ ++ V + ++ +G ++R Sbjct: 188 TRQNWQIRGVVLPDVPEIIKGLESVGLTSLQSGMDNVR 225 >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 Score = 30.4 bits (67), Expect = 0.51 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 8/50 (16%) Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELE 65 M + ++T+ + ++ PH F+ T LL+ + Sbjct: 1 MSLSDLTIQKVESRILDVPLIRPHGFATTTS--------TEQHILLVSVH 42 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Score = 28.4 bits (63), Expect = 1.8 Identities = 31/220 (14%), Positives = 62/220 (28%), Gaps = 21/220 (9%) Query: 25 DICLHRKNLRFDFPH-----HFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGS 79 DI +H + + + A + + ++ E NL II + Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTR--NPLRVFELDFEENLRIIRYCVKYRK 425 Query: 80 -FIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDL--VETSLKYQY 136 I TS + + ++ S K R IY+ ++ + Q+ Sbjct: 426 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 485 Query: 137 PPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKI-VAGIGN-----IYV---CE 187 R + N + I + G + E Sbjct: 486 TLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIE 545 Query: 188 ALWRAKLSPIRKTRSLIQNNGTPKDI--LYKLIQEIQKVL 225 AL+R + + I N G P++ + +L + + Sbjct: 546 ALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASF 585 >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Length = 371 Score = 27.9 bits (60), Expect = 2.5 Identities = 6/48 (12%), Positives = 20/48 (41%), Gaps = 6/48 (12%) Query: 18 MKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELE 65 M ++ + I + + +L + ++ +A R + D ++ + Sbjct: 1 MSDLKIARIDVFQVDLPYSGGVYYLSAGREYRSFDA------TIVRIT 42 >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 Length = 286 Score = 28.1 bits (62), Expect = 2.5 Identities = 13/101 (12%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 135 QYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKL 194 Y + + + + H S++ + + + I G+ + V L A Sbjct: 182 LYSKTPKIDFQRLAEIREVVDVPLVLHG-ASDVPDEFVRRTIELGVTKVNVATELKIAFA 240 Query: 195 SPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235 ++ + P+ + + +++V+ + I+ GS+ Sbjct: 241 GAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* Length = 305 Score = 27.4 bits (60), Expect = 3.7 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 1/119 (0%) Query: 118 DPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKN-SNLKNALLNQKI 176 R F +E + PL G + + + + + I Sbjct: 184 KGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAI 243 Query: 177 VAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235 GI I L A + IR+ + P+ L + +++V+ ++ GS Sbjct: 244 SLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302 >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 Score = 26.4 bits (57), Expect = 6.8 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 8/48 (16%) Query: 18 MKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELE 65 M + +T + N+ +P H + T A +LI+L Sbjct: 1 MSEVLITGLRTRAVNVPLAYPVHTAVGTV--------GTAPLVLIDLA 40 >3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, alternative splicing, GTPase activation, metal-binding, phorbol-ester binding; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Score = 26.6 bits (58), Expect = 7.8 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 100 TISLTNNTNTKKYRVIYN-----DPRRF-GFMDLVETSLKYQYPPLRTLGPEPADNSFNA 153 T++L + T+ +R+ Y+ +RF DLV L Y + + N Sbjct: 87 TLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDGLITLYIETKAAEYIAK-MTINP 145 Query: 154 IYLTHQFH 161 IY + Sbjct: 146 IYEHVGYT 153 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.413 Gapped Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,577,048 Number of extensions: 120601 Number of successful extensions: 399 Number of sequences better than 10.0: 1 Number of HSP's gapped: 367 Number of HSP's successfully gapped: 23 Length of query: 289 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 197 Effective length of database: 3,462,782 Effective search space: 682168054 Effective search space used: 682168054 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.1 bits)