RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
         (289 letters)



>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns
           helix, riken structural genomics/proteomics initiative,
           RSGI; 1.90A {Thermus thermophilus HB8} SCOP: a.156.1.2
           b.113.1.1 g.39.1.8
          Length = 266

 Score =  270 bits (692), Expect = 2e-73
 Identities = 104/290 (35%), Positives = 150/290 (51%), Gaps = 29/290 (10%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
           PELPEVE  RR L  ++   T+  +       R    +  +A   G++I++V RR K+LL
Sbjct: 1   PELPEVETTRRRLRPLVLGQTLRQV-----VHRDPARYRNTALAEGRRILEVDRRGKFLL 55

Query: 62  IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
             LEG + ++ HLGM+G F +E            H    + L   T      + ++DPRR
Sbjct: 56  FALEGGVELVAHLGMTGGFRLE---------PTPHTRAALVLEGRT------LYFHDPRR 100

Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIG 181
           FG +  V      + P L  LGPEP   +F          +    LK  LL+Q++ AG+G
Sbjct: 101 FGRLFGVRRGDYREIPLLLRLGPEPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAGVG 160

Query: 182 NIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD--Y 239
           NIY  EAL+RA+LSP R  RSL       ++   +L + +++VL +A++ GGS+L D  Y
Sbjct: 161 NIYADEALFRARLSPFRPARSL------TEEEARRLYRALREVLAEAVELGGSTLSDQSY 214

Query: 240 VHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
              DG  G FQ   +VYG+ G PC   CG+ + R V AGR T +C  CQ 
Sbjct: 215 RQPDGLPGGFQTRHAVYGREGLPCP-ACGRPVERRVVAGRGTHFCPTCQG 263


>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA
           repair, beta sandwich, zinc finger, helix two-turns
           helix, hydrolase/DNA complex; HET: PED; 2.10A
           {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
          Length = 268

 Score =  231 bits (590), Expect = 1e-61
 Identities = 104/288 (36%), Positives = 145/288 (50%), Gaps = 20/288 (6%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
           PELPEVE  RR +   +   T+    +    LR+            + ++ V RRAKYLL
Sbjct: 1   PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEI-YRLSDQPVLSVQRRAKYLL 59

Query: 62  IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
           +EL     II+HLGMSGS  I            +H+HV + ++N        + Y DPRR
Sbjct: 60  LELPEG-WIIIHLGMSGSLRILPEEL----PPEKHDHVDLVMSNGK-----VLRYTDPRR 109

Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIG 181
           FG     +      +  L  LGPEP  + FN  YL  +  KK + +K  L++ K+V G+G
Sbjct: 110 FGAWLWTKE--LEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVG 167

Query: 182 NIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYVH 241
           NIY  E+L+ A + P R   SL             L + I+ VL+ +I+ GG++L+D++ 
Sbjct: 168 NIYASESLFAAGIHPDRLASSL------SLAECELLARVIKAVLLRSIEQGGTTLKDFLQ 221

Query: 242 IDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
            DG  GYF     VYG+ GEPC   CG  I     A R+TFYC  CQK
Sbjct: 222 SDGKPGYFAQELQVYGRKGEPCR-VCGTPIVATKHAQRATFYCRQCQK 268


>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
           finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
           b.113.1.1 g.39.1.8
          Length = 364

 Score =  193 bits (490), Expect = 5e-50
 Identities = 61/313 (19%), Positives = 97/313 (30%), Gaps = 50/313 (15%)

Query: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60
           MPE PE+ +  + +    + +            R                I  S R K L
Sbjct: 1   MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPF----ESSAYRISASARGKEL 56

Query: 61  LIELEG---------NLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKK 111
            + L            L+++   GMSGSF +           P+H H+            
Sbjct: 57  RLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREEL-----PRHAHLRFYTAPPGPRLA 111

Query: 112 YRVIYNDPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHK-KNSNLKNA 170
               + D RRFG  DL       + P             F    L +   K  +  +  A
Sbjct: 112 LC--FVDIRRFGRWDLGGKWQPGRGPC-----VLQEYQQFRESVLRNLADKAFDRPICEA 164

Query: 171 LLNQKIVAGIGNIYVCEALWRAKLSPIRKTRSLIQ--------------NNGTPKDILYK 216
           LL+Q+   GIGN    E L+R K+ P  K RS+++                   K     
Sbjct: 165 LLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPD 224

Query: 217 LIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQ 276
           L++    V  + +  GG         +     F+     YG  G   L +         +
Sbjct: 225 LLELCHSVPKEVVQLGGRGYGSESGEEDF-AAFRAWLRCYGMPGMSSLQD---------R 274

Query: 277 AGRSTFYCTYCQK 289
            GR+ ++      
Sbjct: 275 HGRTIWFQGDPGP 287


>1k3x_A Endonuclease VIII; hydrolase/DNA; HET: BRU PED; 1.25A {Escherichia
           coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A*
           1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
          Length = 262

 Score =  189 bits (481), Expect = 5e-49
 Identities = 58/290 (20%), Positives = 107/290 (36%), Gaps = 32/290 (11%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLL 61
           PE PE+     NL   +K   +TD+      L+      + +   G+ +  V  R K LL
Sbjct: 1   PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKT-----YQSQLIGQHVTHVETRGKALL 55

Query: 62  IELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRR 121
                +L++  H  + G + +  T      +  +   V +   + T              
Sbjct: 56  THFSNDLTLYSHNQLYGVWRVVDTGE--EPQTTRVLRVKLQTADKTI---------LLYS 104

Query: 122 FGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHK---KNSNLKNALLNQKIVA 178
              ++++       +P L+ +GP+  D +     +  +      +N      LL+Q  +A
Sbjct: 105 ASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLA 164

Query: 179 GIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRD 238
           G+GN    E LW+  L+   K + L             L   + ++   +    G    +
Sbjct: 165 GLGNYLRVEILWQVGLTGNHKAKDLNAAQL------DALAHALLEIPRFSYATRGQVDEN 218

Query: 239 YVHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQ 288
             H     G     F V+ + GEPC   CG +I +   + R  ++C  CQ
Sbjct: 219 KHH-----GALFR-FKVFHRDGEPCE-RCGSIIEKTTLSSRPFYWCPGCQ 261


>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix,
           zinc-LESS finger, hydrolase, THF, glycosidase, lyase,
           multifunctional enzyme; HET: DNA 3DR; 2.20A
           {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A
          Length = 289

 Score =  180 bits (458), Expect = 3e-46
 Identities = 62/304 (20%), Positives = 102/304 (33%), Gaps = 32/304 (10%)

Query: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGK--KIIDVSRRAK 58
           MPE PEV +    L    K  T+  I           P  +         K+ +V  + K
Sbjct: 1   MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGK 60

Query: 59  YLLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYND 118
           +L  EL           +  +F +        +   ++    +S  N          ++D
Sbjct: 61  FLWFELFDPNDKSNKWYIWNTFGLTGM---WSLFEAKYTRAVLSFDNEL-----MAYFSD 112

Query: 119 PRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVA 178
            R FG      +  K     L  LGP+   N    I    ++ +    +   +  +KI +
Sbjct: 113 MRNFGTFKFSNSE-KELKRKLNELGPDFLKNDDIDISKIKKYKQP--IVALLMDQKKIGS 169

Query: 179 GIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGG----S 234
           G+GN  V E L+RAK+ P +   +L          +  L   I+     A D+       
Sbjct: 170 GLGNYLVAEILYRAKIDPHKLGSNL------TDQEIENLWYWIKYETKLAYDSNHIGYMV 223

Query: 235 SLRDYVHIDGSIGYFQNA--------FSVYGKTGEPCL-SNCGQMIRRIVQAGRSTFYCT 285
           +L +     G   Y  N         F VY K  +P         I    +  R+T++  
Sbjct: 224 NLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAP 283

Query: 286 YCQK 289
             QK
Sbjct: 284 AIQK 287


>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G,
           hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus
           lactis} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1pji_A*
           1pm5_A* 1xc8_A* 3c58_A* 1nnj_A 1kfv_A 1pjj_A*
          Length = 272

 Score =  163 bits (412), Expect = 5e-41
 Identities = 98/289 (33%), Positives = 137/289 (47%), Gaps = 18/289 (6%)

Query: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60
           MPELPEVE +RR L   +    +  I      +             GK I  +SRR KYL
Sbjct: 1   MPELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYL 60

Query: 61  LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120
           + E+  +  +I HL M G + +      +   +                   ++IY D R
Sbjct: 61  IFEIGDDFRLISHLRMEGKYRLATLDAPREKHDHLTMK----------FADGQLIYADVR 110

Query: 121 RFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGI 180
           +FG  +L+ T     Y   + +GPEP    F+      +  K    +K  LL Q +VAG+
Sbjct: 111 KFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGL 170

Query: 181 GNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240
           GNIYV E LW AK+ P ++T  LI+++       + L   I ++L  AI  GGSS+R Y 
Sbjct: 171 GNIYVDEVLWLAKIHPEKETNQLIESSI------HLLHDSIIEILQKAIKLGGSSIRTY- 223

Query: 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
              GS G  QN   VYGKTGE C   CG  I++I  AGR T +C  CQ+
Sbjct: 224 SALGSTGKMQNELQVYGKTGEKCS-RCGAEIQKIKVAGRGTHFCPVCQQ 271


>3gpu_A DNA glycosylase; DNA glycosylase, DNA repair, damage search, base
           extrusion; HET: DNA 8OG; 1.62A {Geobacillus
           stearothermophilus} PDB: 3gpx_A* 3gq3_A* 2f5n_A 2f5o_A
           2f5p_A 3gp1_A* 3gq4_A* 3gpy_A* 3gq5_A* 3gpp_A* 2f5q_A*
           2f5s_A* 1l1z_A* 1l1t_A* 1l2b_A* 1l2c_A* 1l2d_A* 1r2z_A*
           1r2y_A* 3jr5_A* ...
          Length = 256

 Score =  136 bits (342), Expect = 7e-33
 Identities = 90/290 (31%), Positives = 132/290 (45%), Gaps = 36/290 (12%)

Query: 2   PELPEVEIIRRNLMMVMKNMTVTDICLHRKNL--RFDFPHHFSAATRGKKIIDVSRRAKY 59
           PELPEVE IRR L+ ++   T+ D+ +   N+         F+A   G+ +  + RR K+
Sbjct: 1   PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKF 60

Query: 60  LLIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDP 119
           L   L    ++I HL M G + +             H HV    T+ +      + Y D 
Sbjct: 61  LKF-LLDRDALISHLRMEGRYAVASALE----PLEPHTHVVFCFTDGS-----ELRYRDV 110

Query: 120 RRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAG 179
           R+FG M +       + PPL  LGPEP   +F+   L  +  K   ++K  LL+  +VAG
Sbjct: 111 RKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAG 170

Query: 180 IGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDY 239
            GNIYV E+L+RA + P R   SL            +L +E+   + +A+  G       
Sbjct: 171 FGNIYVDESLFRAGILPGRPAASLSSKEI------ERLHEEMVATIGEAVMKG------- 217

Query: 240 VHIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
                     Q+   VYG+ G PC   CG  I + V AGR T YC  CQ+
Sbjct: 218 ----------QHHLYVYGRQGNPCK-RCGTPIEKTVVAGRGTHYCPRCQR 256


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 47/259 (18%), Positives = 77/259 (29%), Gaps = 104/259 (40%)

Query: 65  EGN----LSIIVHLGMSGSFIIEHTSCAKPIK--N---PQHNHVTISLTNNTNTKKYRVI 115
           EG     LSI     ++   + ++      +   N   P    V ISL N          
Sbjct: 332 EGVPSPMLSIS---NLTQEQVQDY------VNKTNSHLPAGKQVEISLVNG--------- 373

Query: 116 YNDPRRFGFMDLVETSLKYQYPP---------LRTLG-PEPADNS---FN--AIYLTHQ- 159
               +       V +      PP         LR    P   D S   F+   +  +++ 
Sbjct: 374 ---AKNL-----VVSG-----PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420

Query: 160 ------FHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAK-LS-PIRKTRSLIQNNGTPK 211
                 FH  +  L  A  +  I   +    V    + AK +  P+  T      +G   
Sbjct: 421 LPVASPFH--SHLLVPA--SDLINKDLVKNNVS---FNAKDIQIPVYDTF-----DG--S 466

Query: 212 DILYKLIQEIQKVLIDAIDAGGSSLRDYVHIDGSIGYFQNA--FS-----VYGKTGEPCL 264
           D L  L   I + ++D I      +R  V        ++    F       +G  G   L
Sbjct: 467 D-LRVLSGSISERIVDCI------IRLPVK-------WETTTQFKATHILDFGPGGASGL 512

Query: 265 SNCGQMIR-----RIVQAG 278
                  +     R++ AG
Sbjct: 513 GVLTHRNKDGTGVRVIVAG 531


>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite,
           siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM;
           2.80A {Mycobacterium tuberculosis H37RV} SCOP: d.58.36.1
           d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
          Length = 566

 Score = 33.6 bits (76), Expect = 0.053
 Identities = 6/38 (15%), Positives = 16/38 (42%)

Query: 200 TRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLR 237
            R  +Q +    + + ++ + +  V +   +A G   R
Sbjct: 140 DRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPR 177


>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme,
           [4Fe-4S], snirr, six-electron reduction, phosphate
           complex; HET: SRM; 1.60A {Escherichia coli} SCOP:
           d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A*
           2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A*
           6gep_A* 7gep_A* 8gep_A*
          Length = 497

 Score = 32.1 bits (72), Expect = 0.14
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 200 TRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLR 237
            R   Q +G  K  +  + Q +  V +DA+       R
Sbjct: 43  NRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNR 80


>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
           heme, electron transport, oxidoreductase; HET: SRM;
           2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
           d.134.1.1 d.134.1.1
          Length = 608

 Score = 31.7 bits (71), Expect = 0.20
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 200 TRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLR 237
           TR   Q  G     + ++I+ ++ V + ++ +G  ++R
Sbjct: 188 TRQNWQIRGVVLPDVPEIIKGLESVGLTSLQSGMDNVR 225


>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
          9450D, isomerase, PSI-2, protein structure initiative;
          2.20A {Corynebacterium glutamicum}
          Length = 383

 Score = 30.4 bits (67), Expect = 0.51
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 8/50 (16%)

Query: 16 MVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELE 65
          M + ++T+  +     ++    PH F+  T              LL+ + 
Sbjct: 1  MSLSDLTIQKVESRILDVPLIRPHGFATTTS--------TEQHILLVSVH 42


>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
           3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
          Length = 660

 Score = 28.4 bits (63), Expect = 1.8
 Identities = 31/220 (14%), Positives = 62/220 (28%), Gaps = 21/220 (9%)

Query: 25  DICLHRKNLRFDFPH-----HFSAATRGKKIIDVSRRAKYLLIELEGNLSIIVHLGMSGS 79
           DI +H + + +            A     +        +   ++ E NL II +      
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTR--NPLRVFELDFEENLRIIRYCVKYRK 425

Query: 80  -FIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPRRFGFMDL--VETSLKYQY 136
             I   TS    + + ++     S        K R IY+  ++     +         Q+
Sbjct: 426 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 485

Query: 137 PPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKI-VAGIGN-----IYV---CE 187
              R                          + N +    I +   G        +    E
Sbjct: 486 TLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIE 545

Query: 188 ALWRAKLSPIRKTRSLIQNNGTPKDI--LYKLIQEIQKVL 225
           AL+R   +   +    I N G P++   + +L + +    
Sbjct: 546 ALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASF 585


>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme;
          structural genomics, NYSGXRC, target 9440A, enolase
          superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
          Length = 371

 Score = 27.9 bits (60), Expect = 2.5
 Identities = 6/48 (12%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 18 MKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELE 65
          M ++ +  I + + +L +    ++ +A R  +  D        ++ + 
Sbjct: 1  MSDLKIARIDVFQVDLPYSGGVYYLSAGREYRSFDA------TIVRIT 42


>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A
           {Escherichia coli} SCOP: c.1.10.2
          Length = 286

 Score = 28.1 bits (62), Expect = 2.5
 Identities = 13/101 (12%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 135 QYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGIGNIYVCEALWRAKL 194
            Y     +  +        + +    H   S++ +  + + I  G+  + V   L  A  
Sbjct: 182 LYSKTPKIDFQRLAEIREVVDVPLVLHG-ASDVPDEFVRRTIELGVTKVNVATELKIAFA 240

Query: 195 SPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235
             ++   +       P+  +   +  +++V+ + I+  GS+
Sbjct: 241 GAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281


>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase,
           metal-depdendent aldolase, lyase; 2.00A {Thermus
           aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
          Length = 305

 Score = 27.4 bits (60), Expect = 3.7
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 1/119 (0%)

Query: 118 DPRRFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKN-SNLKNALLNQKI 176
             R F     +E   +    PL   G           +          + +    + + I
Sbjct: 184 KGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAI 243

Query: 177 VAGIGNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSS 235
             GI  I     L  A  + IR+  +       P+  L    + +++V+   ++  GS 
Sbjct: 244 SLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSV 302


>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET:
          RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2
          d.54.1.1 PDB: 1mdr_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
          Length = 359

 Score = 26.4 bits (57), Expect = 6.8
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 8/48 (16%)

Query: 18 MKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYLLIELE 65
          M  + +T +     N+   +P H +  T           A  +LI+L 
Sbjct: 1  MSEVLITGLRTRAVNVPLAYPVHTAVGTV--------GTAPLVLIDLA 40


>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
           alternative splicing, GTPase activation, metal-binding,
           phorbol-ester binding; 2.60A {Homo sapiens} PDB: 1xa6_A
          Length = 463

 Score = 26.6 bits (58), Expect = 7.8
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 100 TISLTNNTNTKKYRVIYN-----DPRRF-GFMDLVETSLKYQYPPLRTLGPEPADNSFNA 153
           T++L   + T+ +R+ Y+       +RF    DLV   L   Y   +         + N 
Sbjct: 87  TLALRFGSQTRNFRLYYDGKHFVGEKRFESIHDLVTDGLITLYIETKAAEYIAK-MTINP 145

Query: 154 IYLTHQFH 161
           IY    + 
Sbjct: 146 IYEHVGYT 153


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,577,048
Number of extensions: 120601
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 23
Length of query: 289
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 197
Effective length of database: 3,462,782
Effective search space: 682168054
Effective search space used: 682168054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)