BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
         (289 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780625|ref|YP_003065038.1| formamidopyrimidine-DNA glycosylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 289

 Score =  603 bits (1556), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/289 (100%), Positives = 289/289 (100%)

Query: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60
           MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL
Sbjct: 1   MPELPEVEIIRRNLMMVMKNMTVTDICLHRKNLRFDFPHHFSAATRGKKIIDVSRRAKYL 60

Query: 61  LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120
           LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR
Sbjct: 61  LIELEGNLSIIVHLGMSGSFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120

Query: 121 RFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGI 180
           RFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGI
Sbjct: 121 RFGFMDLVETSLKYQYPPLRTLGPEPADNSFNAIYLTHQFHKKNSNLKNALLNQKIVAGI 180

Query: 181 GNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240
           GNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV
Sbjct: 181 GNIYVCEALWRAKLSPIRKTRSLIQNNGTPKDILYKLIQEIQKVLIDAIDAGGSSLRDYV 240

Query: 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289
           HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK
Sbjct: 241 HIDGSIGYFQNAFSVYGKTGEPCLSNCGQMIRRIVQAGRSTFYCTYCQK 289


>gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 178

 Score = 24.3 bits (51), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 182 NIYVCEALWRAKLSPI---RKTRSLIQNN 207
           N+Y+CE + + +L  +   RK++S+ +NN
Sbjct: 78  NVYICEPVLKGQLPVVRSKRKSKSMEKNN 106


>gi|254780561|ref|YP_003064974.1| thiamine transporter substrate binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 338

 Score = 23.9 bits (50), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)

Query: 79  SFIIEHTSCAKPIKNPQHNHVTISLTNNTNTKKYRVIYNDPR 120
           +FI +     +P KN         L N+T  K +++IY DPR
Sbjct: 136 AFIYDKRQITQPPKNFDE------LINST--KPWKIIYQDPR 169


>537021.9.peg.410_1 
          Length = 952

 Score = 23.1 bits (48), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 200 TRSLIQNNGTPKDILYKLIQEIQKVLIDAI 229
           T  L++       I YK+ QEI  +LID +
Sbjct: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEV 185


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 22.7 bits (47), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 157 THQFHKKNSNLKNALLN 173
            HQ  K NS+L +AL+N
Sbjct: 953 VHQIWKDNSSLDDALIN 969


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,985
Number of Sequences: 1233
Number of extensions: 7883
Number of successful extensions: 16
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 289
length of database: 328,796
effective HSP length: 73
effective length of query: 216
effective length of database: 238,787
effective search space: 51577992
effective search space used: 51577992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)