Query gi|254780626|ref|YP_003065039.1| 30S ribosomal protein S20 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 90
No_of_seqs 107 out of 1206
Neff 5.5
Searched_HMMs 23785
Date Tue May 31 19:21:02 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780626.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_T 30S ribosomal protein S 100.0 6E-28 2.5E-32 186.4 11.5 90 1-90 6-95 (106)
2 3ofo_T 30S ribosomal protein S 99.9 4.3E-26 1.8E-30 175.3 9.4 85 3-87 1-85 (85)
3 3bbn_T Ribosomal protein S20; 99.9 1.3E-25 5.6E-30 172.3 4.8 89 1-89 84-181 (202)
4 1h6q_A TCTP, P23FYP, translati 33.6 22 0.00092 15.0 5.9 39 22-60 82-120 (168)
5 1txj_A Translationally control 26.0 30 0.0012 14.2 5.3 39 22-60 85-123 (171)
6 1yz1_A Translationally control 25.0 31 0.0013 14.1 5.3 39 22-60 88-126 (174)
7 1vyk_A Oxygen-evolving enhance 23.6 33 0.0014 13.9 6.2 37 26-62 109-145 (149)
8 2oo2_A Hypothetical protein AF 20.9 37 0.0016 13.6 6.8 47 23-69 30-76 (86)
9 2khv_A Phage integrase; soluti 17.1 45 0.0019 13.0 5.1 41 32-72 52-93 (106)
10 2kkv_A Integrase; protein stru 17.0 46 0.0019 13.0 4.7 40 33-72 57-97 (121)
No 1
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=99.95 E-value=6e-28 Score=186.38 Aligned_cols=90 Identities=37% Similarity=0.470 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 96898999999999999999999999999999999999960898999999999999999998658861669999999999
Q gi|254780626|r 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLS 80 (90)
Q Consensus 1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~ 80 (90)
|+||+||+||+||+++++++|++++|.+||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|+||||+
T Consensus 6 ~an~~SA~KRiRq~~krr~rN~~~kS~~kT~iKk~~~Ai~~~d~~~a~~~l~~a~s~iDKAa~KgviHkN~AaRkKSRL~ 85 (106)
T 2vqe_T 6 PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLM 85 (106)
T ss_dssp --CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSSCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 67886289999999999999999999999999999999982789999999999999999998679876214889999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999984269
Q gi|254780626|r 81 KRLKGILTSA 90 (90)
Q Consensus 81 ~~v~~~~~~A 90 (90)
++|+++..++
T Consensus 86 k~vn~l~~~a 95 (106)
T 2vqe_T 86 RKVRQLLEAA 95 (106)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
T ss_conf 9999887400
No 2
>3ofo_T 30S ribosomal protein S20; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_T* 2wwl_T 3ofp_T 2qal_T* 1p6g_T 1p87_T 2aw7_T 2avy_T 2i2u_T 2i2p_T* 2qan_T* 2qb9_T* 2qbb_T* 2qbd_T 2qbf_T 2qbh_T* 2qbj_T* 2qou_T* 2qow_T* 2qoy_T* ...
Probab=99.93 E-value=4.3e-26 Score=175.27 Aligned_cols=85 Identities=28% Similarity=0.429 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 89899999999999999999999999999999999996089899999999999999999865886166999999999999
Q gi|254780626|r 3 NKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHGNAASRKVSRLSKR 82 (90)
Q Consensus 3 n~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~AsRkKSrL~~~ 82 (90)
||+||+||+||+++++++|++++|.+||++|+|+.+|++||.+++.++|+.+++.||+++++||||+|+|+|++|||++.
T Consensus 1 N~kSA~KR~rq~~krr~~N~~~kS~~kT~iKk~~~ai~~~d~~~a~~~~~~a~s~iDka~~kgiihkN~AaRkkSrL~k~ 80 (85)
T 3ofo_T 1 NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQ 80 (85)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTSSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 92888999999999999999999999999999999985388999999999999999999977987565799999999999
Q ss_pred HHHHH
Q ss_conf 99984
Q gi|254780626|r 83 LKGIL 87 (90)
Q Consensus 83 v~~~~ 87 (90)
|++++
T Consensus 81 ~~~ls 85 (85)
T 3ofo_T 81 INKLA 85 (85)
T ss_dssp HTTCC
T ss_pred HHHCC
T ss_conf 87509
No 3
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana}
Probab=99.91 E-value=1.3e-25 Score=172.30 Aligned_cols=89 Identities=31% Similarity=0.375 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 96898999999999999999999999999999999999960---------898999999999999999998658861669
Q gi|254780626|r 1 MANKDSAKKMIRKIARRTLINKSRRSSVRSFMRHANEAITF---------GKIEEATEACRKAESVIQKAKSKGIFHGNA 71 (90)
Q Consensus 1 Man~kSa~Kr~r~~~krr~~N~~~ks~~kt~iKk~~~ai~~---------~d~~~a~~~~~~~~s~lDka~kkgiihkn~ 71 (90)
|.+.+||+||+||++++|++|++++|++||+||+|+++|+. +|.++++++|..+++.||+++++||||+|+
T Consensus 84 ~~k~~SAkKRiRQneKRRlrNks~KS~vKTaIKKv~~AIeagkk~~~~~akD~eeA~k~l~~a~S~IDKAakKGIIHKNt 163 (202)
T 3bbn_T 84 TKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNT 163 (202)
T ss_dssp SCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCCSSSCCCHHHHHHHHHHHHHTTSSSSSSSCTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 77876279999999999999999999999999999999970444323110269999999999999999998669876204
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998426
Q gi|254780626|r 72 ASRKVSRLSKRLKGILTS 89 (90)
Q Consensus 72 AsRkKSrL~~~v~~~~~~ 89 (90)
|+|+||||+++|++|.-.
T Consensus 164 AARKKSRLaKkVKaLei~ 181 (202)
T 3bbn_T 164 GARRKSRLARRKKAVEIH 181 (202)
T ss_dssp HHHHHHHHTTHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999997
No 4
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=33.57 E-value=22 Score=14.96 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999608989999999999999999
Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60 (90)
Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDk 60 (90)
..+++-+|.++|++..-++..+++....+-..++..+.+
T Consensus 82 k~y~~yiK~YmK~vk~~L~e~~perv~~F~~~a~~~vK~ 120 (168)
T 1h6q_A 82 KSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKK 120 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999987530878889999888999999
No 5
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2
Probab=26.04 E-value=30 Score=14.17 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999608989999999999999999
Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60 (90)
Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDk 60 (90)
..+++-||.++|++..-+++++++....+-..++..+.+
T Consensus 85 k~y~~yiK~YmK~vk~~L~e~~perv~~Fk~~a~~~vK~ 123 (171)
T 1txj_A 85 KEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKH 123 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999987640877889999878999999
No 6
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=25.00 E-value=31 Score=14.05 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999608989999999999999999
Q gi|254780626|r 22 KSRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQK 60 (90)
Q Consensus 22 ~~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDk 60 (90)
.++++-||.++|++..-++..+.+....+-..++..+-+
T Consensus 88 k~y~~yiK~YmK~vk~~L~e~~~e~v~~F~~~a~~~vK~ 126 (174)
T 1yz1_A 88 EAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKH 126 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999986510988888999876999999
No 7
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=23.65 E-value=33 Score=13.89 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999960898999999999999999998
Q gi|254780626|r 26 SSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAK 62 (90)
Q Consensus 26 s~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~ 62 (90)
..+.+.+-.+..++..+|...+...+..+.+.||-..
T Consensus 109 ~~Lf~~Le~LD~AAr~Kd~~~a~~~Y~~t~~~Lddvl 145 (149)
T 1vyk_A 109 SKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVL 145 (149)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999985689999999999999999999
No 8
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=20.89 E-value=37 Score=13.56 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999999999999608989999999999999999986588616
Q gi|254780626|r 23 SRRSSVRSFMRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHG 69 (90)
Q Consensus 23 ~~ks~~kt~iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihk 69 (90)
......+.++..-...++.||...|...++=+..-||-.+.=|+|.-
T Consensus 30 ~~l~ma~~Y~~Da~~fl~~gD~v~A~~~i~Ya~gwlDAg~rlGl~~~ 76 (86)
T 2oo2_A 30 GFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWLEIGLEVGKLHE 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf 99999999999999998879868899999999999998888240122
No 9
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=17.10 E-value=45 Score=13.04 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHH-HHH
Q ss_conf 99999999608989999999999999999986588616-699
Q gi|254780626|r 32 MRHANEAITFGKIEEATEACRKAESVIQKAKSKGIFHG-NAA 72 (90)
Q Consensus 32 iKk~~~ai~~~d~~~a~~~~~~~~s~lDka~kkgiihk-n~A 72 (90)
+-.+...+..+..+.|...+..+..+++-|+..|.+-. |-|
T Consensus 52 i~~~l~~~~~~~~~tA~r~~~~~~~vf~~Ai~~g~~~~~NPA 93 (106)
T 2khv_A 52 IMKVLDPIWEQKPETASRLRGRIESVLDWATVRGYREGDNPA 93 (106)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSCSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 999979999651999999999999999999993986789827
No 10
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=17.00 E-value=46 Score=13.03 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=30.8
Q ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999999-608989999999999999999986588616699
Q gi|254780626|r 33 RHANEAI-TFGKIEEATEACRKAESVIQKAKSKGIFHGNAA 72 (90)
Q Consensus 33 Kk~~~ai-~~~d~~~a~~~~~~~~s~lDka~kkgiihkn~A 72 (90)
..+...| +.|..+.+...+..+.++++-|+..|+|..|-+
T Consensus 57 ~~~l~~i~~~g~~~ta~r~~~~l~~if~~Av~~g~i~~NP~ 97 (121)
T 2kkv_A 57 LAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPA 97 (121)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSCSCSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 99999999919979999999999999999998688022857
Done!