254780627
chromosomal replication initiation protein
GeneID in NCBI database: | 8209627 | Locus tag: | CLIBASIA_02570 |
Protein GI in NCBI database: | 254780627 | Protein Accession: | YP_003065040.1 |
Gene range: | -(643376, 644884) | Protein Length: | 502aa |
Gene description: | chromosomal replication initiation protein | ||
COG prediction: | none | ||
KEGG prediction: | dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein | ||
SEED prediction: | Chromosomal replication initiator protein DnaA | ||
Pathway involved in KEGG: | Two-component system [PATH:las02020] | ||
Subsystem involved in SEED: | DNA-replication | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 502 | chromosomal replication initiation protein [Candidatus | |||
315121828 | 507 | chromosomal replication initiation protein [Candidatus | 1 | 0.0 | |
222084650 | 516 | chromosomal replication initiator protein DnaA [Agrobac | 1 | 1e-177 | |
86356015 | 516 | chromosomal replication initiation protein [Rhizobium e | 1 | 1e-176 | |
116250144 | 482 | chromosomal replication initiation protein [Rhizobium l | 1 | 1e-175 | |
190890027 | 516 | chromosomal replication initiator protein [Rhizobium et | 1 | 1e-175 | |
241202756 | 516 | chromosomal replication initiation protein [Rhizobium l | 1 | 1e-174 | |
209547613 | 516 | chromosomal replication initiation protein [Rhizobium l | 1 | 1e-174 | |
222147316 | 524 | chromosomal replication initiation protein [Agrobacteri | 1 | 1e-172 | |
159184258 | 520 | chromosomal replication initiation protein [Agrobacteri | 1 | 1e-171 | |
38257685 | 487 | RecName: Full=Chromosomal replication initiator protein | 1 | 1e-171 |
>gi|315121828|ref|YP_004062317.1| chromosomal replication initiation protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 507 | Back alignment and organism information |
---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/507 (85%), Positives = 460/507 (90%), Gaps = 5/507 (0%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKR-CLEVNCESIFTIVSSRLKNQVGPDVYASWF 59 MQ R ++ CIQ+ND E+ KT N+ D CLE+ CESIF IVSSRLK VGPDVYASWF Sbjct: 1 MQPRGISVCIQKNDDEVPVKTSNMSADTAGCLEIKCESIFKIVSSRLKANVGPDVYASWF 60 Query: 60 QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSV 119 QRLKFHSV HN+VHLSVPTNFLKAWIKNRYLETITKLFQEE SR+QGVEILVRS AL V Sbjct: 61 QRLKFHSVSHNVVHLSVPTNFLKAWIKNRYLETITKLFQEESSRVQGVEILVRSAALVPV 120 Query: 120 --EKT--ASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 EK+ ++ S TK S I+TN K+ I GKQTI+PV GSPLDSRFVFSTFI+G SNRV Sbjct: 121 PSEKSIFPATSSTTKSSTISTNTGKTIAITGKQTINPVLGSPLDSRFVFSTFIDGPSNRV 180 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 ALTAAQ+IAEVDSHG TTVRLNPLFIHASVGLGKTHLLQ+IANA+IKRQPNLRVVYLTAE Sbjct: 181 ALTAAQNIAEVDSHGCTTVRLNPLFIHASVGLGKTHLLQSIANAAIKRQPNLRVVYLTAE 240 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV 295 YFMWRFASAIRDN ALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV Sbjct: 241 YFMWRFASAIRDNHALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV 300 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 AAADRPPSELESLDPRIRSRLQGGV+VPLG HDY+MR SILKNRLAISQKE+P LNINEE Sbjct: 301 AAADRPPSELESLDPRIRSRLQGGVAVPLGSHDYDMRLSILKNRLAISQKENPTLNINEE 360 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQ 415 VL HVART+TTSGRELDGAFNQLVFRHSF PILT EI +ELLSHLV+TGETKKMRIEDIQ Sbjct: 361 VLTHVARTITTSGRELDGAFNQLVFRHSFEPILTVEIVEELLSHLVSTGETKKMRIEDIQ 420 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 RMVAKHYNISRNDLLSNRR+RTVVRPRQ+AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA Sbjct: 421 RMVAKHYNISRNDLLSNRRIRTVVRPRQIAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 480 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 VRKV K+LETDITLKKEVELLKRLISE Sbjct: 481 VRKVGKLLETDITLKKEVELLKRLISE 507 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222084650|ref|YP_002543179.1| chromosomal replication initiator protein DnaA [Agrobacterium radiobacter K84] Length = 516 | Back alignment and organism information |
---|
>gi|86356015|ref|YP_467907.1| chromosomal replication initiation protein [Rhizobium etli CFN 42] Length = 516 | Back alignment and organism information |
---|
>gi|116250144|ref|YP_765982.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. viciae 3841] Length = 482 | Back alignment and organism information |
---|
>gi|190890027|ref|YP_001976569.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652] Length = 516 | Back alignment and organism information |
---|
>gi|241202756|ref|YP_002973852.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 516 | Back alignment and organism information |
---|
>gi|209547613|ref|YP_002279530.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 516 | Back alignment and organism information |
---|
>gi|222147316|ref|YP_002548273.1| chromosomal replication initiation protein [Agrobacterium vitis S4] Length = 524 | Back alignment and organism information |
---|
>gi|159184258|ref|NP_353356.2| chromosomal replication initiation protein [Agrobacterium tumefaciens str. C58] Length = 520 | Back alignment and organism information |
---|
>gi|38257685|sp|Q8UIH1|DNAA_AGRT5 RecName: Full=Chromosomal replication initiator protein DnaA Length = 487 | Back alignment and organism information |
---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 502 | chromosomal replication initiation protein [Candidatus | ||
PRK00149 | 450 | PRK00149, dnaA, chromosomal replication initiation prot | 1e-156 | |
PRK14088 | 440 | PRK14088, dnaA, chromosomal replication initiation prot | 2e-57 | |
COG0593 | 408 | COG0593, DnaA, ATPase involved in DNA replication initi | 1e-105 | |
TIGR00362 | 405 | TIGR00362, DnaA, chromosomal replication initiator prot | 1e-131 | |
pfam00308 | 219 | pfam00308, Bac_DnaA, Bacterial dnaA protein | 2e-72 | |
PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation prot | 1e-59 | |
PRK14087 | 450 | PRK14087, dnaA, chromosomal replication initiation prot | 2e-44 | |
PRK12422 | 445 | PRK12422, PRK12422, chromosomal replication initiation | 1e-41 | |
cd06571 | 90 | cd06571, Bac_DnaA_C, C-terminal domain of bacterial Dna | 2e-32 | |
pfam08299 | 70 | pfam08299, Bac_DnaA_C, domain | 7e-26 | |
PRK06030 | 124 | PRK06030, PRK06030, hypothetical protein; Provisional | 1e-07 | |
smart00760 | 60 | smart00760, Bac_DnaA_C, Bacterial dnaA protein helix-tu | 7e-21 | |
TIGR03420 | 226 | TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator | 1e-15 | |
PRK05642 | 234 | PRK05642, PRK05642, DNA replication initiation factor; | 3e-08 | |
PRK08084 | 235 | PRK08084, PRK08084, DNA replication initiation factor; | 4e-04 | |
PRK08903 | 227 | PRK08903, PRK08903, DnaA regulatory inactivator Hda; Va | 0.003 | |
PRK06835 | 329 | PRK06835, PRK06835, DNA replication protein DnaC; Valid | 6e-09 | |
COG1484 | 254 | COG1484, DnaC, DNA replication protein [DNA replication | 2e-07 | |
cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a wide | 4e-07 | |
smart00382 | 148 | smart00382, AAA, ATPases associated with a variety of c | 7e-04 | |
PRK06893 | 229 | PRK06893, PRK06893, DNA replication initiation factor; | 0.001 | |
PRK08116 | 268 | PRK08116, PRK08116, hypothetical protein; Validated | 3e-04 |
>gnl|CDD|178902 PRK00149, dnaA, chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|172578 PRK14088, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
---|
>gnl|CDD|30938 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
---|
>gnl|CDD|161840 TIGR00362, DnaA, chromosomal replication initiator protein DnaA | Back alignment and domain information |
---|
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein | Back alignment and domain information |
---|
>gnl|CDD|184497 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
---|
>gnl|CDD|172577 PRK14087, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
---|
>gnl|CDD|183521 PRK12422, PRK12422, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
---|
>gnl|CDD|119330 cd06571, Bac_DnaA_C, C-terminal domain of bacterial DnaA proteins | Back alignment and domain information |
---|
>gnl|CDD|149380 pfam08299, Bac_DnaA_C, domain | Back alignment and domain information |
---|
>gnl|CDD|180356 PRK06030, PRK06030, hypothetical protein; Provisional | Back alignment and domain information |
---|
>gnl|CDD|128999 smart00760, Bac_DnaA_C, Bacterial dnaA protein helix-turn-helix domain | Back alignment and domain information |
---|
>gnl|CDD|163254 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda | Back alignment and domain information |
---|
>gnl|CDD|168147 PRK05642, PRK05642, DNA replication initiation factor; Validated | Back alignment and domain information |
---|
>gnl|CDD|181224 PRK08084, PRK08084, DNA replication initiation factor; Provisional | Back alignment and domain information |
---|
>gnl|CDD|181578 PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
---|
>gnl|CDD|180719 PRK06835, PRK06835, DNA replication protein DnaC; Validated | Back alignment and domain information |
---|
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
---|
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
---|
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
---|
>gnl|CDD|168719 PRK06893, PRK06893, DNA replication initiation factor; Validated | Back alignment and domain information |
---|
>gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 502 | chromosomal replication initiation protein [Candidatus | ||
PRK00149 | 447 | dnaA chromosomal replication initiation protein; Review | 100.0 | |
PRK12422 | 455 | chromosomal replication initiation protein; Provisional | 100.0 | |
COG0593 | 408 | DnaA ATPase involved in DNA replication initiation [DNA | 100.0 | |
TIGR00362 | 493 | DnaA chromosomal replication initiator protein DnaA; In | 100.0 | |
pfam00308 | 219 | Bac_DnaA Bacterial dnaA protein. | 100.0 | |
PRK08084 | 235 | DNA replication initiation factor; Provisional | 100.0 | |
TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Members | 100.0 | |
PRK05642 | 234 | DNA replication initiation factor; Validated | 100.0 | |
PRK08903 | 227 | hypothetical protein; Validated | 100.0 | |
PRK06893 | 229 | DNA replication initiation factor; Validated | 100.0 | |
PRK08727 | 233 | hypothetical protein; Validated | 100.0 | |
PRK06620 | 214 | hypothetical protein; Validated | 100.0 | |
PRK09087 | 226 | hypothetical protein; Validated | 100.0 | |
PRK00440 | 318 | rfc replication factor C small subunit; Reviewed | 99.48 | |
PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.43 | |
pfam05496 | 234 | RuvB_N Holliday junction DNA helicase ruvB N-terminus. | 99.32 | |
PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.26 | |
CHL00176 | 631 | ftsH cell division protein; Validated | 99.14 | |
TIGR00635 | 305 | ruvB Holliday junction DNA helicase RuvB; InterPro: IPR | 99.02 | |
TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTERM lo | 98.99 | |
PRK11388 | 639 | DNA-binding transcriptional regulator DhaR; Provisional | 98.99 | |
PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.97 | |
PRK05896 | 613 | DNA polymerase III subunits gamma and tau; Validated | 98.91 | |
PRK08451 | 523 | DNA polymerase III subunits gamma and tau; Validated | 98.84 | |
PRK06647 | 560 | DNA polymerase III subunits gamma and tau; Validated | 98.83 | |
PRK06305 | 462 | DNA polymerase III subunits gamma and tau; Validated | 98.81 | |
COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General function p | 98.8 | |
PRK07133 | 718 | DNA polymerase III subunits gamma and tau; Validated | 98.76 | |
PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validated | 98.76 | |
PRK07270 | 557 | DNA polymerase III subunits gamma and tau; Validated | 98.75 | |
PRK06674 | 563 | DNA polymerase III subunits gamma and tau; Validated | 98.74 | |
PRK05563 | 541 | DNA polymerase III subunits gamma and tau; Validated | 98.74 | |
PRK11608 | 325 | pspF phage shock protein operon transcriptional activat | 98.72 | |
PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; Provis | 98.55 | |
TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 98.5 | |
pfam05621 | 302 | TniB Bacterial TniB protein. This family consists of se | 98.49 | |
PRK10365 | 441 | transcriptional regulatory protein ZraR; Provisional | 98.44 | |
COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA replic | 98.41 | |
PRK08691 | 704 | DNA polymerase III subunits gamma and tau; Validated | 98.4 | |
TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 98.38 | |
TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 98.37 | |
PRK05022 | 510 | anaerobic nitric oxide reductase transcription regulato | 98.36 | |
PRK07003 | 816 | DNA polymerase III subunits gamma and tau; Validated | 98.33 | |
PRK07764 | 775 | DNA polymerase III subunits gamma and tau; Validated | 98.31 | |
PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.29 | |
PRK06872 | 696 | DNA polymerase III subunits gamma and tau; Provisional | 98.27 | |
PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.24 | |
COG1221 | 403 | PspF Transcriptional regulators containing an AAA-type | 98.17 | |
PRK12323 | 721 | DNA polymerase III subunits gamma and tau; Provisional | 98.16 | |
PRK09111 | 600 | DNA polymerase III subunits gamma and tau; Validated | 98.16 | |
PRK07994 | 643 | DNA polymerase III subunits gamma and tau; Validated | 98.15 | |
PRK08853 | 717 | DNA polymerase III subunits gamma and tau; Validated | 98.12 | |
CHL00095 | 823 | clpC Clp protease ATP binding subunit | 98.06 | |
PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 98.0 | |
TIGR02397 | 363 | dnaX_nterm DNA polymerase III, subunits gamma and tau; | 98.0 | |
PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 97.99 | |
KOG0735 | 952 | consensus | 97.91 | |
COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK/DnaJ | 97.86 | |
COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA-type | 97.81 | |
PRK05648 | 705 | DNA polymerase III subunits gamma and tau; Reviewed | 97.8 | |
KOG0731 | 774 | consensus | 97.77 | |
PRK08770 | 663 | DNA polymerase III subunits gamma and tau; Validated | 97.77 | |
COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Posttra | 97.39 | |
PRK09112 | 352 | DNA polymerase III subunit delta'; Validated | 97.38 | |
COG2204 | 464 | AtoC Response regulator containing CheY-like receiver, | 97.37 | |
PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 97.34 | |
) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 97.32 | |
PRK07471 | 363 | DNA polymerase III subunit delta'; Validated | 97.3 | |
KOG0741 | 744 | consensus | 96.62 | |
KOG0991 | 333 | consensus | 96.25 | |
PRK05342 | 411 | clpX ATP-dependent protease ATP-binding subunit ClpX; P | 96.18 | |
KOG1970 | 634 | consensus | 95.95 | |
COG2842 | 297 | Uncharacterized ATPase, putative transposase [General f | 95.52 | |
TIGR02902 | 532 | spore_lonB ATP-dependent protease LonB; InterPro: IPR01 | 95.48 | |
PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 93.96 | |
TIGR02903 | 616 | spore_lon_C ATP-dependent protease, Lon family; InterPr | 92.95 | |
KOG2170 | 344 | consensus | 91.27 | |
PRK08116 | 262 | hypothetical protein; Validated | 99.93 | |
PRK07952 | 242 | DNA replication protein DnaC; Validated | 99.89 | |
PRK06835 | 330 | DNA replication protein DnaC; Validated | 99.86 | |
PRK06921 | 265 | hypothetical protein; Provisional | 99.85 | |
PRK12377 | 248 | putative replication protein; Provisional | 99.81 | |
COG1484 | 254 | DnaC DNA replication protein [DNA replication, recombin | 99.7 | |
PRK09183 | 258 | transposase/IS protein; Provisional | 99.59 | |
KOG0744 | 423 | consensus | 97.88 | |
pfam00158 | 168 | Sigma54_activat Sigma-54 interaction domain. | 97.5 | |
COG0714 | 329 | MoxR-like ATPases [General function prediction only] | 96.89 | |
KOG0743 | 457 | consensus | 96.64 | |
PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 96.33 | |
PRK13894 | 320 | conjugal transfer ATPase TrbB; Provisional | 96.0 | |
PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 95.82 | |
cd06571 | 90 | Bac_DnaA_C C-terminal domain of bacterial DnaA proteins | 99.93 | |
pfam08299 | 70 | Bac_DnaA_C domain. | 99.91 | |
PRK06030 | 136 | hypothetical protein; Provisional | 99.81 | |
PRK13873 | 815 | conjugal transfer ATPase TrbE; Provisional | 92.36 | |
smart00760 | 60 | Bac_DnaA_C Bacterial dnaA protein helix-turn-helix doma | 99.75 | |
pfam01695 | 178 | IstB IstB-like ATP binding protein. This protein contai | 99.74 | |
PRK08939 | 306 | primosomal protein DnaI; Reviewed | 99.71 | |
KOG1051 | 898 | consensus | 94.17 | |
COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intracell | 93.49 | |
TIGR02768 | 888 | TraA_Ti Ti-type conjugative transfer relaxase TraA; Int | 92.51 | |
PRK08181 | 269 | transposase; Validated | 99.63 | |
PRK06526 | 254 | transposase; Provisional | 99.6 | |
cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide variety of | 99.21 | |
COG1485 | 367 | Predicted ATPase [General function prediction only] | 98.72 | |
pfam00004 | 131 | AAA ATPase family associated with various cellular acti | 98.52 | |
pfam05673 | 248 | DUF815 Protein of unknown function (DUF815). This famil | 98.17 | |
PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.93 | |
pfam07728 | 139 | AAA_5 AAA domain (dynein-related subfamily). This Pfam | 97.75 | |
COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of archae | 97.6 | |
PRK05703 | 412 | flhF flagellar biosynthesis regulator FlhF; Validated | 97.43 | |
COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational modi | 97.36 | |
pfam00625 | 182 | Guanylate_kin Guanylate kinase. | 97.25 | |
pfam00493 | 327 | MCM MCM2/3/5 family. | 97.1 | |
smart00072 | 184 | GuKc Guanylate kinase homologues. Active enzymes cataly | 97.1 | |
PRK06995 | 404 | flhF flagellar biosynthesis regulator FlhF; Validated | 97.08 | |
PRK12727 | 557 | flagellar biosynthesis regulator FlhF; Provisional | 97.03 | |
TIGR03167 | 311 | tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Esch | 96.94 | |
KOG0742 | 630 | consensus | 96.89 | |
KOG2228 | 408 | consensus | 96.87 | |
KOG0726 | 440 | consensus | 96.82 | |
pfam03266 | 168 | DUF265 Protein of unknown function, DUF265. | 96.77 | |
PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provisional | 96.76 | |
PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.6 | |
PRK13695 | 174 | putative NTPase; Provisional | 96.57 | |
PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 96.56 | |
cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleotide e | 96.51 | |
PRK06871 | 324 | DNA polymerase III subunit delta'; Validated | 96.5 | |
PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 96.5 | |
PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 96.49 | |
PRK09354 | 350 | recA recombinase A; Provisional | 96.48 | |
COG3910 | 233 | Predicted ATPase [General function prediction only] | 96.47 | |
TIGR02237 | 223 | recomb_radB DNA repair and recombination protein RadB; | 96.42 | |
COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport and m | 96.32 | |
TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this family are | 96.28 | |
PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.07 | |
PRK11784 | 333 | tRNA 2-selenouridine synthase; Provisional | 96.0 | |
cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pigment | 95.97 | |
cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), | 95.75 | |
COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase component | 95.38 | |
cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain I of | 95.28 | |
TIGR01618 | 229 | phage_P_loop phage nucleotide-binding protein; InterPro | 95.23 | |
cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding proteins | 95.19 | |
cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cyt | 95.1 | |
cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor ( | 94.64 | |
PTZ00301 | 210 | uridine kinase; Provisional | 94.63 | |
cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily conserv | 94.62 | |
cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems involved i | 94.6 | |
smart00350 | 509 | MCM minichromosome maintenance proteins. | 94.58 | |
KOG0066 | 807 | consensus | 94.37 | |
PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 94.3 | |
PRK05636 | 507 | replicative DNA helicase; Provisional | 94.19 | |
PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 94.11 | |
cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involved in | 94.09 | |
PRK04040 | 189 | adenylate kinase; Provisional | 93.59 | |
PHA00729 | 228 | NTP-binding motif containing protein | 93.42 | |
PRK05541 | 176 | adenylylsulfate kinase; Provisional | 92.99 | |
PRK07261 | 171 | topology modulation protein; Provisional | 92.72 | |
KOG0609 | 542 | consensus | 92.7 | |
PRK05986 | 190 | cob(I)yrinic acid a,c-diamide adenosyltransferase; Vali | 92.55 | |
PRK06321 | 472 | replicative DNA helicase; Provisional | 92.04 | |
PRK00091 | 304 | miaA tRNA delta(2)-isopentenylpyrophosphate transferase | 91.98 | |
cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyze | 91.75 | |
PRK07414 | 178 | cob(I)yrinic acid a,c-diamide adenosyltransferase; Vali | 91.37 | |
PRK08118 | 167 | topology modulation protein; Reviewed | 90.83 | |
pfam02572 | 172 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/C | 90.61 | |
cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/C | 90.53 | |
PRK06749 | 428 | replicative DNA helicase; Provisional | 90.45 | |
PRK13342 | 417 | recombination factor protein RarA; Reviewed | 99.54 | |
PRK13341 | 726 | recombination factor protein RarA/unknown domain fusion | 99.31 | |
COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the Holl | 99.2 | |
PRK10820 | 513 | DNA-binding transcriptional regulator TyrR; Provisional | 98.85 | |
PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisional | 98.8 | |
TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 98.62 | |
KOG0989 | 346 | consensus | 98.61 | |
TIGR02928 | 383 | TIGR02928 orc1/cdc6 family replication initiation prote | 98.55 | |
COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol meta | 95.16 | |
COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA-type | 92.62 | |
PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.43 | |
COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subunit [D | 99.24 | |
PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 98.7 | |
CHL00095 | 823 | clpC Clp protease ATP binding subunit | 98.66 | |
TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 98.21 | |
KOG0741 | 744 | consensus | 97.96 | |
CHL00081 | 347 | chlI Mg-protoporyphyrin IX chelatase | 97.96 | |
) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 97.9 | |
COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK/DnaJ | 97.87 | |
KOG0736 | 953 | consensus | 97.42 | |
PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 97.28 | |
PRK04195 | 403 | replication factor C large subunit; Provisional | 99.35 | |
PRK03992 | 390 | proteasome-activating nucleotidase; Provisional | 99.22 | |
COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA | 99.19 | |
KOG0735 | 952 | consensus | 99.11 | |
KOG0730 | 693 | consensus | 98.83 | |
CHL00195 | 491 | ycf46 Ycf46; Provisional | 98.78 | |
KOG0737 | 386 | consensus | 98.28 | |
TIGR01241 | 505 | FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: | 98.03 | |
PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 97.94 | |
KOG0728 | 404 | consensus | 97.77 | |
KOG1514 | 767 | consensus | 97.76 | |
TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family; InterPro: IPR | 97.22 | |
pfam00931 | 285 | NB-ARC NB-ARC domain. | 97.08 | |
COG0470 | 325 | HolB ATPase involved in DNA replication [DNA replicatio | 96.89 | |
PRK00300 | 208 | gmk guanylate kinase; Provisional | 96.83 | |
PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 95.93 | |
PRK05818 | 262 | DNA polymerase III subunit delta'; Validated | 94.45 | |
PRK07914 | 320 | hypothetical protein; Reviewed | 94.41 | |
PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.08 | |
PRK05629 | 331 | hypothetical protein; Validated | 92.88 | |
pfam03969 | 361 | AFG1_ATPase AFG1-like ATPase. This family of proteins c | 98.91 | |
smart00382 | 148 | AAA ATPases associated with a variety of cellular activ | 98.22 | |
KOG2383 | 467 | consensus | 98.18 | |
cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily found | 97.88 | |
pfam05970 | 418 | DUF889 PIF1 helicase. The PIF1 helicase inhibits telome | 97.7 | |
cd01393 | 226 | recA_like RecA is a bacterial enzyme which has roles in | 97.11 | |
pfam07724 | 168 | AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry inc | 96.94 | |
cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in homo | 96.89 | |
pfam00154 | 322 | RecA recA bacterial DNA recombination protein. RecA is | 96.78 | |
PTZ00243 | 1560 | ABC transporter; Provisional | 96.73 | |
COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Posttransl | 96.69 | |
cd03246 | 173 | ABCC_Protease_Secretion This family represents the ABC | 96.65 | |
pfam00448 | 196 | SRP54 SRP54-type protein, GTPase domain. This family in | 96.65 | |
cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This prote | 96.64 | |
pfam09848 | 348 | DUF2075 Uncharacterized conserved protein (DUF2075). Th | 96.62 | |
PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 96.46 | |
COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and metaboli | 96.31 | |
cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in cyto | 96.3 | |
PRK11823 | 454 | DNA repair protein RadA; Provisional | 96.29 | |
PRK04296 | 197 | thymidine kinase; Provisional | 96.22 | |
COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility and s | 96.21 | |
PTZ00293 | 284 | thymidine kinase; Provisional | 95.93 | |
cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter nucle | 95.79 | |
PRK04301 | 318 | radA DNA repair and recombination protein RadA; Validat | 95.76 | |
pfam00265 | 175 | TK Thymidine kinase. | 95.75 | |
COG0468 | 279 | RecA RecA/RadA recombinase [DNA replication, recombinat | 95.64 | |
pfam07726 | 131 | AAA_3 ATPase family associated with various cellular ac | 95.55 | |
cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-lik | 95.48 | |
KOG0054 | 1381 | consensus | 95.25 | |
COG3598 | 402 | RepA RecA-family ATPase [DNA replication, recombination | 95.17 | |
PHA02244 | 383 | ATPase-like protein | 95.1 | |
PRK10875 | 607 | recD exonuclease V subunit alpha; Provisional | 95.08 | |
cd03115 | 173 | SRP The signal recognition particle (SRP) mediates the | 95.01 | |
pfam08433 | 266 | KTI12 Chromatin associated protein KTI12. This is a fam | 94.82 | |
COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Transcrip | 94.76 | |
PRK09376 | 416 | rho transcription termination factor Rho; Provisional | 94.57 | |
cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette | 94.24 | |
TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members | 94.09 | |
PTZ00035 | 350 | Rad51; Provisional | 93.96 | |
KOG3347 | 176 | consensus | 93.87 | |
PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subunit Mc | 93.6 | |
PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 93.54 | |
KOG0952 | 1230 | consensus | 93.51 | |
COG4240 | 300 | Predicted kinase [General function prediction only] | 93.16 | |
pfam02283 | 166 | CobU Cobinamide kinase / cobinamide phosphate guanyltra | 92.75 | |
PRK05580 | 699 | primosome assembly protein PriA; Validated | 92.35 | |
cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamide pho | 91.81 | |
KOG3125 | 234 | consensus | 91.67 | |
PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide-phosp | 91.33 | |
COG1100 | 219 | GTPase SAR1 and related small G proteins [General funct | 90.72 | |
KOG0730 | 693 | consensus | 98.87 | |
COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational modi | 98.7 | |
KOG0740 | 428 | consensus | 98.65 | |
KOG0733 | 802 | consensus | 98.37 | |
COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subunit [P | 98.36 | |
pfam01637 | 223 | Arch_ATPase Archaeal ATPase. This family contain a cons | 98.33 | |
KOG0734 | 752 | consensus | 98.29 | |
CHL00181 | 287 | cbbX CbbX; Provisional | 98.26 | |
KOG0738 | 491 | consensus | 98.04 | |
PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 98.03 | |
PTZ00112 | 650 | origin recognition complex 1 protein; Provisional | 97.92 | |
KOG1969 | 877 | consensus | 97.71 | |
KOG0733 | 802 | consensus | 97.61 | |
KOG0651 | 388 | consensus | 97.55 | |
KOG0727 | 408 | consensus | 97.31 | |
pfam06144 | 172 | DNA_pol3_delta DNA polymerase III, delta subunit. DNA p | 97.2 | |
TIGR02640 | 265 | gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR0 | 97.15 | |
PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 97.15 | |
TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 97.13 | |
KOG1968 | 871 | consensus | 97.03 | |
KOG0736 | 953 | consensus | 96.91 | |
PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 96.87 | |
KOG2004 | 906 | consensus | 96.86 | |
pfam03215 | 490 | Rad17 Rad17 cell cycle checkpoint protein. | 96.81 | |
KOG0739 | 439 | consensus | 96.57 | |
COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General function p | 96.28 | |
PRK07940 | 395 | DNA polymerase III subunit delta'; Validated | 95.87 | |
KOG0729 | 435 | consensus | 95.71 | |
KOG0732 | 1080 | consensus | 95.46 | |
KOG2543 | 438 | consensus | 94.99 | |
TIGR02881 | 261 | spore_V_K stage V sporulation protein K; InterPro: IPR0 | 94.79 | |
PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 94.64 | |
TIGR00763 | 941 | lon ATP-dependent protease La; InterPro: IPR004815 Prot | 94.28 | |
TIGR00972 | 248 | 3a0107s01c2 phosphate ABC transporter, ATP-binding prot | 93.98 | |
KOG0652 | 424 | consensus | 93.73 | |
PRK10078 | 184 | ribose 1,5-bisphosphokinase; Provisional | 93.26 | |
pfam06414 | 191 | Zeta_toxin Zeta toxin. This family consists of several | 92.79 | |
COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellular t | 92.42 | |
PRK06672 | 341 | hypothetical protein; Validated | 98.82 | |
PRK06672 | 341 | hypothetical protein; Validated | 98.74 | |
pfam11490 | 180 | DNA_pol3_alph_N DNA polymerase III polC-type N-terminus | 96.25 | |
PRK00448 | 1436 | polC DNA polymerase III PolC; Validated | 93.57 | |
COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General function p | 98.46 | |
KOG2028 | 554 | consensus | 98.33 | |
PRK05574 | 336 | holA DNA polymerase III subunit delta; Reviewed | 97.9 | |
KOG2035 | 351 | consensus | 97.66 | |
PRK13531 | 498 | regulatory ATPase RavA; Provisional | 96.34 | |
PRK07132 | 303 | DNA polymerase III subunit delta'; Validated | 96.02 | |
TIGR02773 | 1192 | addB_Gpos ATP-dependent nuclease subunit B; InterPro: I | 95.71 | |
PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 91.82 | |
KOG2227 | 529 | consensus | 98.19 | |
pfam07693 | 301 | KAP_NTPase KAP family P-loop domain. The KAP (after Kid | 98.12 | |
PRK06067 | 241 | flagellar accessory protein FlaH; Validated | 97.47 | |
pfam06745 | 231 | KaiC KaiC. This family represents a conserved region wi | 97.46 | |
cd01394 | 218 | radB RadB. The archaeal protein radB shares similarity | 97.19 | |
PRK04328 | 250 | hypothetical protein; Provisional | 97.05 | |
TIGR02525 | 374 | plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IP | 96.8 | |
smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.48 | |
pfam05729 | 165 | NACHT NACHT domain. This NTPase domain is found in apop | 96.38 | |
PRK10536 | 262 | hypothetical protein; Provisional | 96.06 | |
cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, invol | 95.29 | |
cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor | 95.08 | |
PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Validated | 94.87 | |
TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereus E33 | 94.67 | |
pfam00437 | 283 | GSPII_E Type II/IV secretion system protein. This famil | 94.43 | |
KOG1803 | 649 | consensus | 94.42 | |
KOG0243 | 1041 | consensus | 94.36 | |
cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle po | 94.34 | |
TIGR02759 | 613 | TraD_Ftype type IV conjugative transfer system coupling | 94.24 | |
TIGR00618 | 1063 | sbcc exonuclease SbcC; InterPro: IPR004592 All proteins | 93.86 | |
cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like subgro | 93.78 | |
smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Microtubu | 93.72 | |
KOG0242 | 675 | consensus | 93.67 | |
pfam02456 | 370 | Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can in | 93.31 | |
cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like group. K | 93.18 | |
cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup | 93.1 | |
KOG0240 | 607 | consensus | 93.0 | |
PRK10790 | 593 | putative multidrug transporter membrane\ATP-binding com | 92.97 | |
cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain | 92.92 | |
cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_lik | 92.9 | |
cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Me | 92.79 | |
cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | 92.69 | |
KOG4280 | 574 | consensus | 92.68 | |
cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like subg | 92.62 | |
cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter that i | 92.54 | |
COG4178 | 604 | ABC-type uncharacterized transport system, permease and | 92.5 | |
KOG2878 | 282 | consensus | 92.48 | |
PRK05480 | 209 | uridine kinase; Provisional | 92.28 | |
KOG0060 | 659 | consensus | 92.11 | |
PRK10646 | 153 | putative ATPase; Provisional | 91.94 | |
cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | 91.87 | |
pfam00225 | 321 | Kinesin Kinesin motor domain. | 91.84 | |
pfam02367 | 123 | UPF0079 Uncharacterized P-loop hydrolase UPF0079. This | 91.78 | |
PRK03846 | 198 | adenylylsulfate kinase; Provisional | 91.61 | |
pfam06068 | 395 | TIP49 TIP49 C-terminus. This family consists of the C-t | 91.25 | |
cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) domain | 91.16 | |
PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-binding pr | 91.14 | |
cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-l | 91.1 | |
PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 90.88 | |
smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 90.72 | |
smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 90.72 | |
PRK06696 | 227 | uridine kinase; Validated | 90.72 | |
KOG1942 | 456 | consensus | 90.53 | |
cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family includ | 97.62 | |
pfam00910 | 105 | RNA_helicase RNA helicase. This family includes RNA hel | 97.27 | |
TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.12 | |
COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signal tra | 95.47 | |
TIGR00416 | 481 | sms DNA repair protein RadA; InterPro: IPR004504 RadA/S | 95.03 | |
pfam04851 | 103 | ResIII Type III restriction enzyme, res subunit. | 94.8 | |
TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family, HK0 | 93.9 | |
PRK05595 | 444 | replicative DNA helicase; Provisional | 93.15 | |
COG1136 | 226 | SalX ABC-type antimicrobial peptide transport system, A | 92.52 | |
PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.56 | |
PRK02362 | 736 | ski2-like helicase; Provisional | 93.89 | |
PRK00254 | 717 | ski2-like helicase; Provisional | 92.94 | |
PRK09361 | 224 | radB DNA repair and recombination protein RadB; Provisi | 97.53 | |
cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recomb | 96.98 | |
pfam08423 | 261 | Rad51 Rad51. Rad51 is a DNA repair and recombination pr | 96.58 | |
cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexameric h | 96.48 | |
pfam00270 | 167 | DEAD DEAD/DEAH box helicase. Members of this family inc | 96.25 | |
cd01128 | 249 | rho_factor Transcription termination factor rho is a ba | 96.17 | |
pfam02562 | 205 | PhoH PhoH-like protein. PhoH is a cytoplasmic protein a | 96.03 | |
pfam03796 | 186 | DnaB_C DnaB-like helicase C terminal domain. The hexame | 96.0 | |
cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse family | 95.89 | |
PRK08233 | 182 | hypothetical protein; Provisional | 95.88 | |
pfam01580 | 202 | FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive se | 95.81 | |
PRK13539 | 206 | cytochrome c biogenesis protein CcmA; Provisional | 95.69 | |
cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNa | 95.69 | |
cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding component | 95.66 | |
PRK12608 | 379 | transcription termination factor Rho; Provisional | 95.58 | |
cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-type tr | 95.5 | |
cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter | 95.49 | |
cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This | 95.48 | |
cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type tr | 95.31 | |
cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is encod | 95.27 | |
cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_like) | 95.27 | |
CHL00060 | 480 | atpB ATP synthase CF1 beta subunit | 95.22 | |
PRK13542 | 224 | consensus | 95.2 | |
PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 95.07 | |
PRK09280 | 466 | F0F1 ATP synthase subunit beta; Validated | 94.94 | |
PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 94.9 | |
PRK10789 | 569 | putative multidrug transporter membrane\ATP-binding com | 94.83 | |
cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in drug | 94.79 | |
cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway component | 94.77 | |
PRK07667 | 190 | uridine kinase; Provisional | 94.68 | |
cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC component | 94.44 | |
PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Reviewed | 94.26 | |
cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'-3' he | 94.26 | |
cd01133 | 274 | F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide | 94.23 | |
cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Antigen P | 94.17 | |
PRK08927 | 441 | fliI flagellum-specific ATP synthase; Validated | 94.16 | |
cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin exporte | 94.07 | |
cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II of t | 93.96 | |
COG1341 | 398 | Predicted GTPase or GTP-binding protein [General functi | 93.82 | |
PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 93.78 | |
cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of the L | 93.36 | |
PRK06851 | 368 | hypothetical protein; Provisional | 93.22 | |
PRK13632 | 273 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.19 | |
PRK13700 | 732 | conjugal transfer protein TraD; Provisional | 92.98 | |
cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNa | 92.92 | |
PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 92.89 | |
PRK12678 | 667 | transcription termination factor Rho; Provisional | 92.64 | |
cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase component o | 92.61 | |
cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), | 92.61 | |
COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transport sys | 92.57 | |
cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC component o | 92.5 | |
cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phosphory | 92.47 | |
TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC transpor | 92.15 | |
pfam01583 | 157 | APS_kinase Adenylylsulphate kinase. Enzyme that catalys | 92.15 | |
PRK09270 | 230 | frcK putative fructose transport system kinase; Reviewe | 92.08 | |
TIGR02142 | 361 | modC_ABC molybdate ABC transporter, ATP-binding protein | 91.91 | |
TIGR03305 | 449 | alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. | 91.88 | |
PRK07263 | 453 | consensus | 91.65 | |
COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of expr | 91.56 | |
cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversible pho | 91.52 | |
PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 91.45 | |
PRK06315 | 442 | type III secretion system ATPase; Provisional | 91.3 | |
COG3451 | 796 | VirB4 Type IV secretory pathway, VirB4 components [Intr | 91.22 | |
TIGR00345 | 330 | arsA arsenite-activated ATPase (arsA); InterPro: IPR003 | 91.07 | |
PRK12597 | 459 | F0F1 ATP synthase subunit beta; Provisional | 91.02 | |
cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-bindi | 90.93 | |
pfam00006 | 213 | ATP-synt_ab ATP synthase alpha/beta family, nucleotide- | 90.69 | |
pfam00485 | 196 | PRK Phosphoribulokinase / Uridine kinase family. In Ara | 90.66 | |
cd03239 | 178 | ABC_SMC_head The structural maintenance of chromosomes | 90.51 | |
PRK05563 | 541 | DNA polymerase III subunits gamma and tau; Validated | 97.49 | |
cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (PDR) f | 95.41 | |
PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 95.36 | |
cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-like (P | 95.26 | |
cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a | 95.26 | |
cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-binding p | 95.04 | |
PRK13651 | 304 | cobalt transporter ATP-binding subunit; Provisional | 94.98 | |
PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.79 | |
cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, closely | 94.78 | |
cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This | 94.69 | |
PRK06674 | 563 | DNA polymerase III subunits gamma and tau; Validated | 94.67 | |
PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subunit; Pr | 94.63 | |
PRK10938 | 490 | putative molybdenum transport ATP-binding protein ModF; | 94.34 | |
PRK13657 | 585 | cyclic beta-1,2-glucan ABC transporter; Provisional | 94.06 | |
PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.0 | |
PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP-bindi | 93.96 | |
PRK07270 | 557 | DNA polymerase III subunits gamma and tau; Validated | 93.95 | |
cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is a cen | 93.94 | |
PRK11176 | 581 | lipid transporter ATP-binding/permease protein; Provisi | 93.44 | |
PRK10535 | 648 | macrolide transporter ATP-binding /permease protein; Pr | 93.29 | |
cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor S | 93.24 | |
PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisional | 93.17 | |
cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibr | 92.79 | |
TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, LssB fa | 92.55 | |
PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 92.53 | |
PRK13640 | 283 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 92.48 | |
PRK13650 | 276 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 92.3 | |
PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding subunit | 91.83 | |
COG3842 | 352 | PotA ABC-type spermidine/putrescine transport systems, | 91.18 | |
COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase and pe | 90.75 | |
PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 90.46 | |
PRK05201 | 442 | hslU ATP-dependent protease ATP-binding subunit; Provis | 97.35 | |
COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replication | 97.22 | |
PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; Prov | 95.99 | |
PRK13647 | 273 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.58 | |
COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein [Tran | 95.07 | |
KOG1942 | 456 | consensus | 94.95 | |
PRK04132 | 863 | replication factor C small subunit; Provisional | 94.6 | |
TIGR02782 | 315 | TrbB_P P-type conjugative transfer ATPase TrbB; InterPr | 97.14 | |
pfam06068 | 395 | TIP49 TIP49 C-terminus. This family consists of the C-t | 96.06 | |
TIGR01817 | 574 | nifA Nif-specific regulatory protein; InterPro: IPR0101 | 95.78 | |
PRK09519 | 790 | recA recombinase A; Reviewed | 95.68 | |
PRK13767 | 878 | ATP-dependent helicase; Provisional | 94.92 | |
pfam00580 | 494 | UvrD-helicase UvrD/REP helicase. The Rep family helicas | 92.71 | |
PTZ00265 | 1467 | multidrug resistance protein (mdr1); Provisional | 90.95 | |
COG1204 | 766 | Superfamily II helicase [General function prediction on | 94.78 | |
PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 92.18 | |
COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational modi | 94.78 | |
pfam03969 | 361 | AFG1_ATPase AFG1-like ATPase. This family of proteins c | 94.29 | |
TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. subt | 94.16 | |
COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome biog | 94.22 | |
cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibr | 93.33 | |
COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase compon | 93.23 | |
PRK13545 | 549 | tagH teichoic acids export protein ATP-binding subunit; | 92.69 | |
PRK09536 | 409 | btuD corrinoid ABC transporter ATPase; Reviewed | 91.55 | |
PRK01172 | 674 | ski2-like helicase; Provisional | 92.97 | |
PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 91.0 |
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
---|
>PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
---|
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
---|
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
---|
>pfam00308 Bac_DnaA Bacterial dnaA protein | Back alignment and domain information |
---|
>PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
---|
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
---|
>PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
---|
>PRK08903 hypothetical protein; Validated | Back alignment and domain information |
---|
>PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
---|
>PRK08727 hypothetical protein; Validated | Back alignment and domain information |
---|
>PRK06620 hypothetical protein; Validated | Back alignment and domain information |
---|
>PRK09087 hypothetical protein; Validated | Back alignment and domain information |
---|
>PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
---|
>PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
---|
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
---|
>PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
---|
>CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
---|
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase | Back alignment and domain information |
---|
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
---|
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
---|
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
---|
>PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
---|
>PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK07270 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK06674 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
---|
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
---|
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
---|
>pfam05621 TniB Bacterial TniB protein | Back alignment and domain information |
---|
>PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
---|
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
---|
>PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
---|
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
---|
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
---|
>PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
---|
>PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
---|
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
---|
>PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
---|
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
---|