HHsearch alignment for GI: 254780627 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=97.39 E-value=0.0019 Score=44.58 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHH----HHHHHHHHHCCCH
Q ss_conf 899999999824100136555554898627888857999999999986306881686469888----9999999861988
Q gi|254780627|r 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF----MWRFASAIRDNCA 250 (502)
Q Consensus 175 lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F----~~~~~~a~~~~~~ 250 (502)
T Consensus 336 lEyLAV~~l~~~~kG-------pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIi 408 (782)
T COG0466 336 LEYLAVQKLTKKLKG-------PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKII 408 (782)
T ss_pred HHHHHHHHHHCCCCC-------CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHH
T ss_conf 999999986146788-------5799978998870118999999958977999547654277753553123356872899
Q ss_pred HHHHHHHHHCCHHHHHHHHHHC----CC-C-HHHH-H----HHHHHHH-----HHCCCEEEEECCCCHHHHCCCCHHHHH
Q ss_conf 9999997403102054444531----75-0-6999-9----9999998-----856987999648756761363034576
Q gi|254780627|r 251 LNLKDSLRNIDLLLIDDMQFLQ----GK-L-IQHE-F----CHLLNSL-----LDSAKQVVAAADRPPSELESLDPRIRS 314 (502)
Q Consensus 251 ~~fr~~~r~~DvLliDDiqfl~----gk-~-tqee-~----f~~~n~l-----~~~gkqiv~tsd~~P~~l~~l~~rL~S 314 (502)
T Consensus 409 Q~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA---Nsl~tIP~PLlD 485 (782)
T COG0466 409 QGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA---NSLDTIPAPLLD 485 (782)
T ss_pred HHHHHHCCCCCEEEEECHHHCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEEC---CCCCCCCHHHHC
T ss_conf 99998677687478640333167777886888886269765676122201676644325888603---751329867843
Q ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHHHHH-----HCCCCCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_conf 5302115775158889999999999988643-----11689789899999985027--88899999999999986
Q gi|254780627|r 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQK-----EDPKLNINEEVLMHVARTVT--TSGRELDGAFNQLVFRH 382 (502)
Q Consensus 315 R~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~-----~~~~~~l~~~v~~~la~~~~--~~vR~Legal~~l~~~~ 382 (502)
T Consensus 486 RME---iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~ 557 (782)
T COG0466 486 RME---VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKA 557 (782)
T ss_pred CEE---EEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 030---564268886999999998445689997599823355658999999998767621038999999999999