HHsearch alignment for GI: 254780627 and conserved domain: COG0541

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=92.42  E-value=0.98  Score=25.26  Aligned_cols=162  Identities=18%  Similarity=0.260  Sum_probs=89.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH---------------CCC--------HHHH
Q ss_conf             54898627888857999999999986306881686469888999999986---------------198--------8999
Q gi|254780627|r  197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---------------DNC--------ALNL  253 (502)
Q Consensus       197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~---------------~~~--------~~~f  253 (502)
T Consensus       101 ~vImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a  178 (451)
T COG0541         101 TVILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA  178 (451)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHH
T ss_conf             589998156797486899999999974--994589850567868999999999860985316778899799999999999


Q ss_pred             HHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHH-------------------------------------------
Q ss_conf             999740310205444453175-069999999999885-------------------------------------------
Q gi|254780627|r  254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD-------------------------------------------  289 (502)
Q Consensus       254 r~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~-------------------------------------------  289 (502)
T Consensus       179 k~--~~~DvvIvDT----AGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGd  252 (451)
T COG0541         179 KE--EGYDVVIVDT----AGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGD  252 (451)
T ss_pred             HH--CCCCEEEEEC----CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             97--4998899968----87330309999999999855398748998764445678999999866269864999714678


Q ss_pred             ------------CCCEEEEECC-CCHHHHCCC-CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf             ------------6987999648-756761363-03457653021157751588899999999999886431168978989
Q gi|254780627|r  290 ------------SAKQVVAAAD-RPPSELESL-DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE  355 (502)
Q Consensus       290 ------------~gkqiv~tsd-~~P~~l~~l-~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~  355 (502)
T Consensus       253 aRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG-------MGDv~sLvE----k~~~--------~~d~e  313 (451)
T COG0541         253 ARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG-------MGDVLSLIE----KAEE--------VVDEE  313 (451)
T ss_pred             CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC-------CCCHHHHHH----HHHH--------HHHHH
T ss_conf             7622888569987898599745887354777495889998537-------320999999----9998--------65699


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             999998502788899999999999986302
Q gi|254780627|r  356 VLMHVARTVTTSGRELDGAFNQLVFRHSFA  385 (502)
Q Consensus       356 v~~~la~~~~~~vR~Legal~~l~~~~~~~  385 (502)
T Consensus       314 ~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmG  343 (451)
T COG0541         314 EAEKLAEKLKKGKFTLEDFLEQLEQMKKMG  343 (451)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf             999999999849978999999999987338