HHsearch alignment for GI: 254780627 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=92.42 E-value=0.98 Score=25.26 Aligned_cols=162 Identities=18% Similarity=0.260 Sum_probs=89.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH---------------CCC--------HHHH
Q ss_conf 54898627888857999999999986306881686469888999999986---------------198--------8999
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---------------DNC--------ALNL 253 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~---------------~~~--------~~~f 253 (502)
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHH
T ss_conf 589998156797486899999999974--994589850567868999999999860985316778899799999999999
Q ss_pred HHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHH-------------------------------------------
Q ss_conf 999740310205444453175-069999999999885-------------------------------------------
Q gi|254780627|r 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD------------------------------------------- 289 (502)
Q Consensus 254 r~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~------------------------------------------- 289 (502)
T Consensus 179 k~--~~~DvvIvDT----AGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 179 KE--EGYDVVIVDT----AGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HH--CCCCEEEEEC----CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 97--4998899968----87330309999999999855398748998764445678999999866269864999714678
Q ss_pred ------------CCCEEEEECC-CCHHHHCCC-CHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf ------------6987999648-756761363-03457653021157751588899999999999886431168978989
Q gi|254780627|r 290 ------------SAKQVVAAAD-RPPSELESL-DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 (502)
Q Consensus 290 ------------~gkqiv~tsd-~~P~~l~~l-~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~ 355 (502)
T Consensus 253 aRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG-------MGDv~sLvE----k~~~--------~~d~e 313 (451)
T COG0541 253 ARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG-------MGDVLSLIE----KAEE--------VVDEE 313 (451)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHCC-------CCCHHHHHH----HHHH--------HHHHH
T ss_conf 7622888569987898599745887354777495889998537-------320999999----9998--------65699
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999998502788899999999999986302
Q gi|254780627|r 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 (502)
Q Consensus 356 v~~~la~~~~~~vR~Legal~~l~~~~~~~ 385 (502)
T Consensus 314 ~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 314 EAEKLAEKLKKGKFTLEDFLEQLEQMKKMG 343 (451)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999849978999999999987338