HHsearch alignment for GI: 254780627 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=97.86 E-value=0.0017 Score=44.93 Aligned_cols=227 Identities=18% Similarity=0.262 Sum_probs=130.5
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 7644788763288614789999999982-410013655555489862788885799999999998630688168646988
Q gi|254780627|r 158 LDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 (502)
Q Consensus 158 LNpryTFDnFVVG~sN~lA~aAAkaVAe-~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~ 236 (502)
T Consensus 483 l~le~~L~~rViGQd~AV~-~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSE 559 (786)
T COG0542 483 LNLERRLKKRVIGQDEAVE-AVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSE 559 (786)
T ss_pred HHHHHHHHCCEECHHHHHH-HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCEEECHHH
T ss_conf 8679997365017399999-99999999856999999873578866788656999999999996599--74445545687
Q ss_pred HHHHHHHHHHCCC---------HHHHHHHHH--HCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC--------CCEEE
Q ss_conf 8999999986198---------899999974--0310205444453175069999999999--8856--------98799
Q gi|254780627|r 237 FMWRFASAIRDNC---------ALNLKDSLR--NIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS--------AKQVV 295 (502)
Q Consensus 237 F~~~~~~a~~~~~---------~~~fr~~~r--~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~--------gkqiv 295 (502)
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK-AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK-AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHHHHHHCCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHH-CCHHHHHHHHHHHCCCCEECCCCCEEECCEEEEE
T ss_conf 777877998727999872006554003766069986888412644-0889999999984678055489988843002899
Q ss_pred EECCCCHHHHC------------------------CCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH---H-C
Q ss_conf 96487567613------------------------630345765302115775158889999999999988643---1-1
Q gi|254780627|r 296 AAADRPPSELE------------------------SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK---E-D 347 (502)
Q Consensus 296 ~tsd~~P~~l~------------------------~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~---~-~ 347 (502)
T Consensus 639 mTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~--II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~ 716 (786)
T COG0542 639 MTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDE--IIPFNPLSKEVLERIVDLQLNRLAKRLAERG 716 (786)
T ss_pred EECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCC--EEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 84502659897531343210046788999999985389989851261--7850679989999999999999999998689
Q ss_pred CCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 68978989999998502788---89999999999998630246877889999987
Q gi|254780627|r 348 PKLNINEEVLMHVARTVTTS---GRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 (502)
Q Consensus 348 ~~~~l~~~v~~~la~~~~~~---vR~Legal~~l~~~~~~~~~~~~~~~~~~l~~ 399 (502)
T Consensus 717 i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~---------i~~~La~~iL~~ 762 (786)
T COG0542 717 ITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE---------IEDPLADEILFG 762 (786)
T ss_pred CEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHH---------HHHHHHHHHHHC
T ss_conf 5599888999999996468776736799999999---------989999999846