HHsearch alignment for GI: 254780627 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=98.80 E-value=1.6e-06 Score=66.34 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=121.0
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHH---HHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 576447887632886147899999999---824100136555554--898627888857999999999986306881686
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVALTAAQSI---AEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA~aAAkaV---Ae~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y 231 (502)
T Consensus 113 e~~~~it~ddVi-Gq--EeAK~kcrli~~yLenPe~Fg---~WAPknVLFyGppGTGKTm~Akalane~kv-----p~l~ 181 (368)
T COG1223 113 EIISDITLDDVI-GQ--EEAKRKCRLIMEYLENPERFG---DWAPKNVLFYGPPGTGKTMMAKALANEAKV-----PLLL 181 (368)
T ss_pred HHHCCCCHHHHH-CH--HHHHHHHHHHHHHHHCHHHHC---CCCCCEEEEECCCCCCHHHHHHHHHCCCCC-----CEEE
T ss_conf 661366176641-63--988888799999964968763---457541687789996487999987254578-----5487
Q ss_pred EEHHHHHHHHHHHHHCCCHHHHHHHHH--HCCHHHHHHHHHHC---------CC-C-HHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 469888999999986198899999974--03102054444531---------75-0-69999999999885698799964
Q gi|254780627|r 232 LTAEYFMWRFASAIRDNCALNLKDSLR--NIDLLLIDDMQFLQ---------GK-L-IQHEFCHLLNSLLDSAKQVVAAA 298 (502)
Q Consensus 232 ~~~e~F~~~~~~a~~~~~~~~fr~~~r--~~DvLliDDiqfl~---------gk-~-tqee~f~~~n~l~~~gkqiv~ts 298 (502)
T Consensus 182 vkat~liGehVGdg-ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 182 VKATELIGEHVGDG-ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred ECHHHHHHHHHHHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 11688888774359-89999999988751984998400245553045788645499999999985017445775699950
Q ss_pred CCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 87567613630345765302115775158889999999999988643116897898999999850278-88999999999
Q gi|254780627|r 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQ 377 (502)
Q Consensus 299 d~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~-~vR~Legal~~ 377 (502)
T Consensus 261 TN~p~---~LD~aiRsRFEeE--IEF~LP~~eEr~~ile~y~k-----~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 261 TNRPE---LLDPAIRSRFEEE--IEFKLPNDEERLEILEYYAK-----KFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred CCCHH---HCCHHHHHHHHHE--EEEECCCHHHHHHHHHHHHH-----HCCCCCCCC-HHHHHHHHCCCCCHHHHHHHHH
T ss_conf 59846---5078888655650--65648885899999999898-----589765568-9999998478772068999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780627|r 378 LV 379 (502)
Q Consensus 378 l~ 379 (502)
T Consensus 330 ~a 331 (368)
T COG1223 330 TA 331 (368)
T ss_pred HH
T ss_conf 99