HHsearch alignment for GI: 254780627 and conserved domain: COG1223

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=98.80  E-value=1.6e-06  Score=66.34  Aligned_cols=200  Identities=22%  Similarity=0.284  Sum_probs=121.0

Q ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHH---HHCCCCCCCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             576447887632886147899999999---824100136555554--898627888857999999999986306881686
Q gi|254780627|r  157 PLDSRFVFSTFIEGSSNRVALTAAQSI---AEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVY  231 (502)
Q Consensus       157 ~LNpryTFDnFVVG~sN~lA~aAAkaV---Ae~pg~~~~~~~~NP--Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y  231 (502)
T Consensus       113 e~~~~it~ddVi-Gq--EeAK~kcrli~~yLenPe~Fg---~WAPknVLFyGppGTGKTm~Akalane~kv-----p~l~  181 (368)
T COG1223         113 EIISDITLDDVI-GQ--EEAKRKCRLIMEYLENPERFG---DWAPKNVLFYGPPGTGKTMMAKALANEAKV-----PLLL  181 (368)
T ss_pred             HHHCCCCHHHHH-CH--HHHHHHHHHHHHHHHCHHHHC---CCCCCEEEEECCCCCCHHHHHHHHHCCCCC-----CEEE
T ss_conf             661366176641-63--988888799999964968763---457541687789996487999987254578-----5487


Q ss_pred             EEHHHHHHHHHHHHHCCCHHHHHHHHH--HCCHHHHHHHHHHC---------CC-C-HHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             469888999999986198899999974--03102054444531---------75-0-69999999999885698799964
Q gi|254780627|r  232 LTAEYFMWRFASAIRDNCALNLKDSLR--NIDLLLIDDMQFLQ---------GK-L-IQHEFCHLLNSLLDSAKQVVAAA  298 (502)
Q Consensus       232 ~~~e~F~~~~~~a~~~~~~~~fr~~~r--~~DvLliDDiqfl~---------gk-~-tqee~f~~~n~l~~~gkqiv~ts  298 (502)
T Consensus       182 vkat~liGehVGdg-ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa  260 (368)
T COG1223         182 VKATELIGEHVGDG-ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA  260 (368)
T ss_pred             ECHHHHHHHHHHHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             11688888774359-89999999988751984998400245553045788645499999999985017445775699950


Q ss_pred             CCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf             87567613630345765302115775158889999999999988643116897898999999850278-88999999999
Q gi|254780627|r  299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQ  377 (502)
Q Consensus       299 d~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~-~vR~Legal~~  377 (502)
T Consensus       261 TN~p~---~LD~aiRsRFEeE--IEF~LP~~eEr~~ile~y~k-----~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK  329 (368)
T COG1223         261 TNRPE---LLDPAIRSRFEEE--IEFKLPNDEERLEILEYYAK-----KFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLK  329 (368)
T ss_pred             CCCHH---HCCHHHHHHHHHE--EEEECCCHHHHHHHHHHHHH-----HCCCCCCCC-HHHHHHHHCCCCCHHHHHHHHH
T ss_conf             59846---5078888655650--65648885899999999898-----589765568-9999998478772068999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780627|r  378 LV  379 (502)
Q Consensus       378 l~  379 (502)
T Consensus       330 ~a  331 (368)
T COG1223         330 TA  331 (368)
T ss_pred             HH
T ss_conf             99