HHsearch alignment for GI: 254780627 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=95.07 E-value=0.33 Score=28.57 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CEEEEECCCCHHHHCC--------CCHHHHHHHHCCEEEEECCCCH
Q ss_conf 31020544445317506999999999988569--8799964875676136--------3034576530211577515888
Q gi|254780627|r 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSA--KQVVAAADRPPSELES--------LDPRIRSRLQGGVSVPLGLHDY 329 (502)
Q Consensus 260 ~DvLliDDiqfl~gk~tqee~f~~~n~l~~~g--kqiv~tsd~~P~~l~~--------l~~rL~SR~~~Gl~~~i~~Pd~ 329 (502)
T Consensus 292 pGVLFIDEvHmLD-----IE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl---lII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHMLD-----IECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL---LIISTRPYSR 363 (450)
T ss_pred CCEEEEECHHHHH-----HHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCHHHHHHE---EEEECCCCCH
T ss_conf 3428973213455-----7899999987631467579997177500121667768888987666225---6774477988
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC-CCHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999999998864311689789899999985027-888999999999--999863024687788999998
Q gi|254780627|r 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT-TSGRELDGAFNQ--LVFRHSFAPILTAEIADELLS 398 (502)
Q Consensus 330 e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~-~~vR~Legal~~--l~~~~~~~~~~~~~~~~~~l~ 398 (502)
T Consensus 364 ~EireIi~iRa-----~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 364 EEIREIIRIRA-----KEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HHHHHHHHHHH-----HHHCCCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHHHHHH
T ss_conf 99999999764-----35403048889999975150344899998616888999871797465667999999