HHsearch alignment for GI: 254780627 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=99.70 E-value=4e-16 Score=134.60 Aligned_cols=161 Identities=21% Similarity=0.325 Sum_probs=124.8
Q ss_pred HHHHH---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 88763---288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r 163 VFSTF---IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnF---VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~ 239 (502)
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~------~~nl~l~G~~G~GKthLa~Ai~~~l~~~--g~sv~f~~~~el~~ 146 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVEFFER------GENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLS 146 (254)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHH
T ss_conf 854302358855669999999999987325------8828998999987999999999999983--98499988599999
Q ss_pred HHHHHHHCCCH-HHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-CC-----HH
Q ss_conf 99999861988-999999740310205444453175-069999999999885698799964875676136-30-----34
Q gi|254780627|r 240 RFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES-LD-----PR 311 (502)
Q Consensus 240 ~~~~a~~~~~~-~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l~-----~r 311 (502)
T Consensus 147 ~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~ 225 (254)
T COG1484 147 KLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEA 225 (254)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHH
T ss_conf 99998745526899998875289899823677668815587999999999973054-20205882788866067511689
Q ss_pred HHHHHHCCE-EEEECCCCHHHH
Q ss_conf 576530211-577515888999
Q gi|254780627|r 312 IRSRLQGGV-SVPLGLHDYEMR 332 (502)
Q Consensus 312 L~SR~~~Gl-~~~i~~Pd~e~r 332 (502)
T Consensus 226 ~~dRi~~~~~~~~~~g~s~rl~ 247 (254)
T COG1484 226 LLDRILHHSHVIVIKGESYRLN 247 (254)
T ss_pred HHHHHHHCCCCEEECCHHHHHH
T ss_conf 9999986161037615167653