HHsearch alignment for GI: 254780627 and conserved domain: COG1484

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=99.70  E-value=4e-16  Score=134.60  Aligned_cols=161  Identities=21%  Similarity=0.325  Sum_probs=124.8

Q ss_pred             HHHHH---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf             88763---288614789999999982410013655555489862788885799999999998630688168646988899
Q gi|254780627|r  163 VFSTF---IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW  239 (502)
Q Consensus       163 TFDnF---VVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~  239 (502)
T Consensus        75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~------~~nl~l~G~~G~GKthLa~Ai~~~l~~~--g~sv~f~~~~el~~  146 (254)
T COG1484          75 TFEEFDFEFQPGIDKKALEDLASLVEFFER------GENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLS  146 (254)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEHHHHHH
T ss_conf             854302358855669999999999987325------8828998999987999999999999983--98499988599999


Q ss_pred             HHHHHHHCCCH-HHHHHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCC-CC-----HH
Q ss_conf             99999861988-999999740310205444453175-069999999999885698799964875676136-30-----34
Q gi|254780627|r  240 RFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES-LD-----PR  311 (502)
Q Consensus       240 ~~~~a~~~~~~-~~fr~~~r~~DvLliDDiqfl~gk-~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~-l~-----~r  311 (502)
T Consensus       147 ~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~  225 (254)
T COG1484         147 KLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEA  225 (254)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHH
T ss_conf             99998745526899998875289899823677668815587999999999973054-20205882788866067511689


Q ss_pred             HHHHHHCCE-EEEECCCCHHHH
Q ss_conf             576530211-577515888999
Q gi|254780627|r  312 IRSRLQGGV-SVPLGLHDYEMR  332 (502)
Q Consensus       312 L~SR~~~Gl-~~~i~~Pd~e~r  332 (502)
T Consensus       226 ~~dRi~~~~~~~~~~g~s~rl~  247 (254)
T COG1484         226 LLDRILHHSHVIVIKGESYRLN  247 (254)
T ss_pred             HHHHHHHCCCCEEECCHHHHHH
T ss_conf             9999986161037615167653