HHsearch alignment for GI: 254780627 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=97.37  E-value=0.011  Score=39.14  Aligned_cols=199  Identities=19%  Similarity=0.194  Sum_probs=120.8

Q ss_pred             CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf             288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r  168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI  245 (502)
Q Consensus       168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~  245 (502)
T Consensus       143 liG~S~am~~l~~~i~kvA~s~---------a~VLI~GESGtGKElvAr~I-H~~S~R~-~~PFVavNcaAip~~l~ESE  211 (464)
T COG2204         143 LVGESPAMQQLRRLIAKVAPSD---------ASVLITGESGTGKELVARAI-HQASPRA-KGPFIAVNCAAIPENLLESE  211 (464)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHH-HHHCCCC-CCCCEEEECCCCCHHHHHHH
T ss_conf             5206999999999999984779---------97899778987589999999-8607445-89925633464898887777


Q ss_pred             HCC--------CHHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC--------CCEEEEECCCCHHHH
Q ss_conf             619--------889999997--40310205444453175069999999999--8856--------987999648756761
Q gi|254780627|r  246 RDN--------CALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS--------AKQVVAAADRPPSEL  305 (502)
Q Consensus       246 ~~~--------~~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~--------gkqiv~tsd~~P~~l  305 (502)
T Consensus       212 LFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~  290 (464)
T COG2204         212 LFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEE  290 (464)
T ss_pred             HHCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCC-HHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHH
T ss_conf             6145656767764345761577379658732311099-999999999987070673588860000169996057789999


Q ss_pred             C---CCCHHHHHHHHCCEEEEECCCCHHHHHH--------HHHHHHHHHHHHCCCCCCCHHHHHHH-HHHCCCCHHHHHH
Q ss_conf             3---6303457653021157751588899999--------99999988643116897898999999-8502788899999
Q gi|254780627|r  306 E---SLDPRIRSRLQGGVSVPLGLHDYEMRFS--------ILKNRLAISQKEDPKLNINEEVLMHV-ARTVTTSGRELDG  373 (502)
Q Consensus       306 ~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~--------Il~~k~~~~~~~~~~~~l~~~v~~~l-a~~~~~~vR~Leg  373 (502)
T Consensus       291 v~~G~FReDLyyRLn---V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~WPGNVREL~N  365 (464)
T COG2204         291 VAAGRFREDLYYRLN---VVPLRLPPLRERKEDIPLLAEHFLKRFAAELG--RPPKGFSPEALAALLAYDWPGNVRELEN  365 (464)
T ss_pred             HHCCCCHHHHHHHHC---CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf             881973788886523---31104876223620079999999999999809--9988879999999973899818999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999863
Q gi|254780627|r  374 AFNQLVFRHS  383 (502)
Q Consensus       374 al~~l~~~~~  383 (502)
T Consensus       366 ~ver~~il~~  375 (464)
T COG2204         366 VVERAVILSE  375 (464)
T ss_pred             HHHHHHHCCC
T ss_conf             9999985178