HHsearch alignment for GI: 254780627 and conserved domain: COG2204
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=97.37 E-value=0.011 Score=39.14 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=120.8
Q ss_pred CCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 288614789--999999982410013655555489862788885799999999998630688168646988899999998
Q gi|254780627|r 168 IEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 (502)
Q Consensus 168 VVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~ 245 (502)
T Consensus 143 liG~S~am~~l~~~i~kvA~s~---------a~VLI~GESGtGKElvAr~I-H~~S~R~-~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVAPSD---------ASVLITGESGTGKELVARAI-HQASPRA-KGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC---------CCEEEECCCCCCHHHHHHHH-HHHCCCC-CCCCEEEECCCCCHHHHHHH
T ss_conf 5206999999999999984779---------97899778987589999999-8607445-89925633464898887777
Q ss_pred HCC--------CHHHHHHHH--HHCCHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC--------CCEEEEECCCCHHHH
Q ss_conf 619--------889999997--40310205444453175069999999999--8856--------987999648756761
Q gi|254780627|r 246 RDN--------CALNLKDSL--RNIDLLLIDDMQFLQGKLIQHEFCHLLNS--LLDS--------AKQVVAAADRPPSEL 305 (502)
Q Consensus 246 ~~~--------~~~~fr~~~--r~~DvLliDDiqfl~gk~tqee~f~~~n~--l~~~--------gkqiv~tsd~~P~~l 305 (502)
T Consensus 212 LFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-l~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~ 290 (464)
T COG2204 212 LFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-LELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEE 290 (464)
T ss_pred HHCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCC-HHHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHH
T ss_conf 6145656767764345761577379658732311099-999999999987070673588860000169996057789999
Q ss_pred C---CCCHHHHHHHHCCEEEEECCCCHHHHHH--------HHHHHHHHHHHHCCCCCCCHHHHHHH-HHHCCCCHHHHHH
Q ss_conf 3---6303457653021157751588899999--------99999988643116897898999999-8502788899999
Q gi|254780627|r 306 E---SLDPRIRSRLQGGVSVPLGLHDYEMRFS--------ILKNRLAISQKEDPKLNINEEVLMHV-ARTVTTSGRELDG 373 (502)
Q Consensus 306 ~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~--------Il~~k~~~~~~~~~~~~l~~~v~~~l-a~~~~~~vR~Leg 373 (502)
T Consensus 291 v~~G~FReDLyyRLn---V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~WPGNVREL~N 365 (464)
T COG2204 291 VAAGRFREDLYYRLN---VVPLRLPPLRERKEDIPLLAEHFLKRFAAELG--RPPKGFSPEALAALLAYDWPGNVRELEN 365 (464)
T ss_pred HHCCCCHHHHHHHHC---CCEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 881973788886523---31104876223620079999999999999809--9988879999999973899818999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999863
Q gi|254780627|r 374 AFNQLVFRHS 383 (502)
Q Consensus 374 al~~l~~~~~ 383 (502)
T Consensus 366 ~ver~~il~~ 375 (464)
T COG2204 366 VVERAVILSE 375 (464)
T ss_pred HHHHHHHCCC
T ss_conf 9999985178