HHsearch alignment for GI: 254780627 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=98.41 E-value=0.00016 Score=52.16 Aligned_cols=204 Identities=20% Similarity=0.240 Sum_probs=123.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCC--EEEEEHHHHHH
Q ss_conf 88763288614789999999982410013655555489862788885799999999998630-6881--68646988899
Q gi|254780627|r 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ-PNLR--VVYLTAEYFMW 239 (502)
Q Consensus 163 TFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~-~~~~--v~y~~~e~F~~ 239 (502)
T Consensus 14 ~F~ev-vGQe~---v~~~L~nal~~~ri~-----hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 14 TFDDV-VGQEH---VVKTLSNALENGRIA-----HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred CHHHH-CCCHH---HHHHHHHHHHHCCCH-----HHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 07776-36489---999999999808423-----3365137777671049999999956889877772253166686514
Q ss_pred H------HHHHHHCCCHHHHH---HHHH------HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 9------99998619889999---9974------0310205444453175069999999999885-------69879996
Q gi|254780627|r 240 R------FASAIRDNCALNLK---DSLR------NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD-------SAKQVVAA 297 (502)
Q Consensus 240 ~------~~~a~~~~~~~~fr---~~~r------~~DvLliDDiqfl~gk~tqee~f~~~n~l~~-------~gkqiv~t 297 (502)
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHH--------HHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 886410113644454867999999872468866664189983187643--------788888751113686674899853
Q ss_pred CCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 48756761363034576530211577515888999999999998864311689789899999985027888999999999
Q gi|254780627|r 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 (502)
Q Consensus 298 sd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~ 377 (502)
T Consensus 157 Te--~~---Kip~TIlSRcq---~f~fkri~~~~I~~~L~~-----i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq 223 (515)
T COG2812 157 TE--PQ---KIPNTILSRCQ---RFDFKRLDLEEIAKHLAA-----ILDKEGINIEEDALSLIARAAEGSLRDALSLLDQ 223 (515)
T ss_pred CC--CC---CCCHHHHHCCC---CCCCCCCCHHHHHHHHHH-----HHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 88--67---68404552122---022257999999999999-----9874487547999999999828974567778999
Q ss_pred HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999863024687788999998
Q gi|254780627|r 378 LVFRHSFAPILTAEIADELLS 398 (502)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~l~ 398 (502)
T Consensus 224 ~i~~~~--~~It~~~v~~~lG 242 (515)
T COG2812 224 AIAFGE--GEITLESVRDMLG 242 (515)
T ss_pred HHHCCC--CCCCHHHHHHHHC
T ss_conf 997067--7656999999968