HHsearch alignment for GI: 254780627 and conserved domain: COG2842
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only].
Probab=95.52 E-value=0.25 Score=29.53 Aligned_cols=200 Identities=20% Similarity=0.162 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH-
Q ss_conf 5764478876328861478999999998241001365555548986278888579999999999863068816864698-
Q gi|254780627|r 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE- 235 (502)
Q Consensus 157 ~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e- 235 (502)
T Consensus 64 q~~~~~~~~~~l~tkt~r~~~~~-~~~A~k~g~l--------~~vyg~~g~gKt~a~----~~y~~s~p~~--~l~~~~p 128 (297)
T COG2842 64 QAALEKLAPDFLETKTVRRIFFR-TRPASKTGSL--------VVVYGYAGLGKTQAA----KNYAPSNPNA--LLIEADP 128 (297)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHH-HHHHHHCCCE--------EEEECCCCCHHHHHH----HHHCCCCCCC--EEECCCH
T ss_conf 33555466432035024767542-0555516854--------788633220068999----8653358641--3615881
Q ss_pred -----HHHHHHHHHHHC---CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHHC-CCEEEEECCCCHH
Q ss_conf -----889999999861---988999999740310205444453175069999999999---8856-9879996487567
Q gi|254780627|r 236 -----YFMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS---LLDS-AKQVVAAADRPPS 303 (502)
Q Consensus 236 -----~F~~~~~~a~~~---~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~---l~~~-gkqiv~tsd~~P~ 303 (502)
T Consensus 129 ~~~a~~~i~~i~~~~~~~~~~~~~d~--~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~--pr 203 (297)
T COG2842 129 SYTALVLILIICAAAFGATDGTINDL--TERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGM--PR 203 (297)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHH-CCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCEEEEECC--HH
T ss_conf 36788999999998740142168888--99999997-157652665032125868999999988750815998367--68
Q ss_pred HHCCCC------HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 613630------34576530211577515888999999999998864311689789899999985027888999999999
Q gi|254780627|r 304 ELESLD------PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 (502)
Q Consensus 304 ~l~~l~------~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~ 377 (502)
T Consensus 204 L~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~---------~~~~~~v~~~~~~~~g~~~~L~~~l~~ 274 (297)
T COG2842 204 LFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVLP---------TEDELVLMQVIKETEGNIRRLDKILAG 274 (297)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 88516640578999998756676553320536888999986176---------326999999999600157689999860
Q ss_pred HHHHHHHC
Q ss_conf 99986302
Q gi|254780627|r 378 LVFRHSFA 385 (502)
Q Consensus 378 l~~~~~~~ 385 (502)
T Consensus 275 ~~~~a~~~ 282 (297)
T COG2842 275 AVGTARSN 282 (297)
T ss_pred HHHHHHHC
T ss_conf 14454422