HHsearch alignment for GI: 254780627 and conserved domain: COG2842

>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only].
Probab=95.52  E-value=0.25  Score=29.53  Aligned_cols=200  Identities=20%  Similarity=0.162  Sum_probs=108.6

Q ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHH-
Q ss_conf             5764478876328861478999999998241001365555548986278888579999999999863068816864698-
Q gi|254780627|r  157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE-  235 (502)
Q Consensus       157 ~LNpryTFDnFVVG~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e-  235 (502)
T Consensus        64 q~~~~~~~~~~l~tkt~r~~~~~-~~~A~k~g~l--------~~vyg~~g~gKt~a~----~~y~~s~p~~--~l~~~~p  128 (297)
T COG2842          64 QAALEKLAPDFLETKTVRRIFFR-TRPASKTGSL--------VVVYGYAGLGKTQAA----KNYAPSNPNA--LLIEADP  128 (297)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHH-HHHHHHCCCE--------EEEECCCCCHHHHHH----HHHCCCCCCC--EEECCCH
T ss_conf             33555466432035024767542-0555516854--------788633220068999----8653358641--3615881


Q ss_pred             -----HHHHHHHHHHHC---CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH---HHHC-CCEEEEECCCCHH
Q ss_conf             -----889999999861---988999999740310205444453175069999999999---8856-9879996487567
Q gi|254780627|r  236 -----YFMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNS---LLDS-AKQVVAAADRPPS  303 (502)
Q Consensus       236 -----~F~~~~~~a~~~---~~~~~fr~~~r~~DvLliDDiqfl~gk~tqee~f~~~n~---l~~~-gkqiv~tsd~~P~  303 (502)
T Consensus       129 ~~~a~~~i~~i~~~~~~~~~~~~~d~--~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~--pr  203 (297)
T COG2842         129 SYTALVLILIICAAAFGATDGTINDL--TERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGM--PR  203 (297)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHH-CCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCEEEEECC--HH
T ss_conf             36788999999998740142168888--99999997-157652665032125868999999988750815998367--68


Q ss_pred             HHCCCC------HHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             613630------34576530211577515888999999999998864311689789899999985027888999999999
Q gi|254780627|r  304 ELESLD------PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ  377 (502)
Q Consensus       304 ~l~~l~------~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~~v~~~la~~~~~~vR~Legal~~  377 (502)
T Consensus       204 L~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~---------~~~~~~v~~~~~~~~g~~~~L~~~l~~  274 (297)
T COG2842         204 LFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAALVLP---------TEDELVLMQVIKETEGNIRRLDKILAG  274 (297)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             88516640578999998756676553320536888999986176---------326999999999600157689999860


Q ss_pred             HHHHHHHC
Q ss_conf             99986302
Q gi|254780627|r  378 LVFRHSFA  385 (502)
Q Consensus       378 l~~~~~~~  385 (502)
T Consensus       275 ~~~~a~~~  282 (297)
T COG2842         275 AVGTARSN  282 (297)
T ss_pred             HHHHHHHC
T ss_conf             14454422