HHsearch alignment for GI: 254780627 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=97.60 E-value=0.00097 Score=46.61 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=91.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCC-----------------------------
Q ss_conf 898627888857999999999986306881686469888999999986198-----------------------------
Q gi|254780627|r 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC----------------------------- 249 (502)
Q Consensus 199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~~~~~~a~~~~~----------------------------- 249 (502)
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~--g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~ 108 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMN--GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSA 108 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCCHHHH
T ss_conf 9998889854889999999988708--95489998403599999988863887168775062689993245422573778
Q ss_pred ------HHHHHHHHHHCCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCE
Q ss_conf ------8999999740310205444453175---0699999999998856987999648756761363034576530211
Q gi|254780627|r 250 ------ALNLKDSLRNIDLLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 (502)
Q Consensus 250 ------~~~fr~~~r~~DvLliDDiqfl~gk---~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl 320 (502)
T Consensus 109 ~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvh--p~---~l~e~~~~rirs~~ 182 (235)
T COG2874 109 RKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVH--PS---ALDEDVLTRIRSAC 182 (235)
T ss_pred HHHHHHHHHHH-HHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--HH---HCCHHHHHHHHHHH
T ss_conf 99999997557-75237789995343776526499999999999998728978999947--34---33789999998752
Q ss_pred EEEE
Q ss_conf 5775
Q gi|254780627|r 321 SVPL 324 (502)
Q Consensus 321 ~~~i 324 (502)
T Consensus 183 d~~l 186 (235)
T COG2874 183 DVYL 186 (235)
T ss_pred HEEE
T ss_conf 0258