HHsearch alignment for GI: 254780627 and conserved domain: COG2909
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription].
Probab=94.76 E-value=0.34 Score=28.56 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=63.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE-------HHHHHHHHHHHHHCC--C----H-------------
Q ss_conf 5489862788885799999999998630688168646-------988899999998619--8----8-------------
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT-------AEYFMWRFASAIRDN--C----A------------- 250 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~-------~e~F~~~~~~a~~~~--~----~------------- 250 (502)
T Consensus 38 RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~ 114 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLE 114 (894)
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
T ss_conf 3899867887758899999998---6476554357645776678899999999999874723247899998733556599
Q ss_pred ---HHHHHHHHHC---CHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCEEEEECC-CCHH
Q ss_conf ---9999997403---102054444531750699999999998856---987999648-7567
Q gi|254780627|r 251 ---LNLKDSLRNI---DLLLIDDMQFLQGKLIQHEFCHLLNSLLDS---AKQVVAAAD-RPPS 303 (502)
Q Consensus 251 ---~~fr~~~r~~---DvLliDDiqfl~gk~tqee~f~~~n~l~~~---gkqiv~tsd-~~P~ 303 (502)
T Consensus 115 ~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~----~~l~fLl~~~P~~l~lvv~SR~rP~l 173 (894)
T COG2909 115 SLLSSLLNELASYEGPLYLVLDDYHLISDPALH----EALRFLLKHAPENLTLVVTSRSRPQL 173 (894)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH----HHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 999999999875149649995353225760289----99999997199874999976568887