HHsearch alignment for GI: 254780627 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=92.62 E-value=0.93 Score=25.43 Aligned_cols=287 Identities=18% Similarity=0.203 Sum_probs=140.3
Q ss_pred HHHHHHHCCCCCHHHH--HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 4788763288614789--99999998241001365555548986278888579999999999863068816864698889
Q gi|254780627|r 161 RFVFSTFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 161 ryTFDnFVVG~sN~lA--~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
T Consensus 219 ~~~~~~-iIG~S~am~~ll~~i~~VA~Sd---------~tVLi~GETGtGKElvAraI-H~~S-~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGG-IIGRSPAMRQLLKEIEVVAKSD---------STVLIRGETGTGKELVARAI-HQLS-PRRDKPFVKLNCAALP 286 (550)
T ss_pred HCCCCC-CCCCCHHHHHHHHHHHHHHCCC---------CEEEEECCCCCCHHHHHHHH-HHHC-CCCCCCCEEEECCCCC
T ss_conf 024456-2306999999999999872689---------80798458885389999999-8737-5557986663122253
Q ss_pred HHHHHHH----HC----CCHHHHHHHHH--HCCHHHHHHHHHHC----CC--C-HHHHHHHHH--HHHHHCCCEEEEECC
Q ss_conf 9999998----61----98899999974--03102054444531----75--0-699999999--998856987999648
Q gi|254780627|r 239 WRFASAI----RD----NCALNLKDSLR--NIDLLLIDDMQFLQ----GK--L-IQHEFCHLL--NSLLDSAKQVVAAAD 299 (502)
Q Consensus 239 ~~~~~a~----~~----~~~~~fr~~~r--~~DvLliDDiqfl~----gk--~-tqee~f~~~--n~l~~~gkqiv~tsd 299 (502)
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATN 366 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATN 366 (550)
T ss_pred HHHHHHHHHCCCCCCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEEECCC
T ss_conf 78888887453322333510146763565579757602203678778899999986365253479963677789982135
Q ss_pred CCHHHHC---CCCHHHHHHHHCCEEEEECCCCHHHHH-------H-HHHHHHHHHHHHCCCCCCCHHHHHHHHH-HCCCC
Q ss_conf 7567613---630345765302115775158889999-------9-9999998864311689789899999985-02788
Q gi|254780627|r 300 RPPSELE---SLDPRIRSRLQGGVSVPLGLHDYEMRF-------S-ILKNRLAISQKEDPKLNINEEVLMHVAR-TVTTS 367 (502)
Q Consensus 300 ~~P~~l~---~l~~rL~SR~~~Gl~~~i~~Pd~e~r~-------~-Il~~k~~~~~~~~~~~~l~~~v~~~la~-~~~~~ 367 (502)
T Consensus 367 RDL~~~V~~G~FRaDLYyRLs---V~Pl~lPPLRER~~DIplLA~~Fle-~~~~~~-gr~~l~ls~~Al~~L~~y~wPGN 441 (550)
T COG3604 367 RDLEEMVRDGEFRADLYYRLS---VFPLELPPLRERPEDIPLLAGYFLE-KFRRRL-GRAILSLSAEALELLSSYEWPGN 441 (550)
T ss_pred HHHHHHHHCCCCHHHHHHCCC---CCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHC-CCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 309999874951554532102---0013789834588667999999999-998863-97640339899999973999971
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHC--CCCCHHHCHHH
Q ss_conf 8999999999999863024687---788999998763037887579899999999980999999408--88774014457
Q gi|254780627|r 368 GRELDGAFNQLVFRHSFAPILT---AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS--NRRVRTVVRPR 442 (502)
Q Consensus 368 vR~Legal~~l~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~i~~~~I~~~V~~~~~i~~~~l~s--~~R~~~i~~~R 442 (502)
T Consensus 442 VRELen~veRavlla--~~~~~~~d~~~l~~~~~~~~~~~~~~~-~p~-----~-----~~~~~~p~~~~l~~~~~~~eR 508 (550)
T COG3604 442 VRELENVVERAVLLA--GRLTRRGDLCTLELSLSALLWKTLPAP-EPS-----A-----LPEPALPGEHTLREATEEFER 508 (550)
T ss_pred HHHHHHHHHHHHHHC--CCCCCCCCEEEHHHHHHCCCCCCCCCC-CCC-----C-----CCCCCCCCCCCHHHHHHHHHH
T ss_conf 999998999999970--476777651016555301212467899-865-----5-----677557765651555778999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999985156878999884798437999999999
Q gi|254780627|r 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 (502)
Q Consensus 443 qiamyL~r~~t~~s~~~IG~~fg~rdHsTV~~a~~ki 479 (502)
T Consensus 509 ~~-I~~aL~~~~~~~a~AAr~LG-l~~~~L~~~~kRl 543 (550)
T COG3604 509 QL-IIAALEETNGNWAGAARRLG-LTRRTLLYRMKRL 543 (550)
T ss_pred HH-HHHHHHHHCCHHHHHHHHHC-CCHHHHHHHHHHC
T ss_conf 99-99999981981999999958-9988999999972