HHsearch alignment for GI: 254780627 and conserved domain: COG4962
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=93.49 E-value=0.12 Score=31.80 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=58.4
Q ss_pred CHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 4478876328-861478999999998241001365555548986278888579999999999863068816864698889
Q gi|254780627|r 160 SRFVFSTFIE-GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 (502)
Q Consensus 160 pryTFDnFVV-G~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~ 238 (502)
T Consensus 145 ~~ltl~dli~~gt~~~~~-a~~L~~av~~r-------~N-ILisGGTGSGKTTlLNal~~~i~~~---eRvItiEDt--- 209 (355)
T COG4962 145 IKLTLLDLIIFGTMIRRA-AKFLRRAVGIR-------CN-ILISGGTGSGKTTLLNALSGFIDSD---ERVITIEDT--- 209 (355)
T ss_pred CCCCHHHHHHCCCCCHHH-HHHHHHHHHHC-------EE-EEEECCCCCCHHHHHHHHHHCCCCC---CEEEEEEEH---
T ss_conf 525599998738958899-99999998620-------15-9996787887999999997157976---508998123---
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 999999861988999999740310205444453175--06999999999988569879996487567613
Q gi|254780627|r 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 (502)
Q Consensus 239 ~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~ 306 (502)
T Consensus 210 aELq--l~~ph~vrL~TR-----------~~n~Eg~gevtm~dLv--kn~LRmRPDRIiVGEVRG~Ea~d 264 (355)
T COG4962 210 AELQ--LAHPHVVRLETR-----------PPNVEGTGEVTMRDLV--KNALRMRPDRIIVGEVRGVEALD 264 (355)
T ss_pred HHHC--CCCCCEEEEEEC-----------CCCCCCCCEEEHHHHH--HHHHHCCCCCEEEEEECCCCHHH
T ss_conf 6644--699855788634-----------8877776558899999--98753286536888860705999