HHsearch alignment for GI: 254780627 and conserved domain: COG4962

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=93.49  E-value=0.12  Score=31.80  Aligned_cols=117  Identities=19%  Similarity=0.225  Sum_probs=58.4

Q ss_pred             CHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf             4478876328-861478999999998241001365555548986278888579999999999863068816864698889
Q gi|254780627|r  160 SRFVFSTFIE-GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM  238 (502)
Q Consensus       160 pryTFDnFVV-G~sN~lA~aAAkaVAe~pg~~~~~~~~NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~  238 (502)
T Consensus       145 ~~ltl~dli~~gt~~~~~-a~~L~~av~~r-------~N-ILisGGTGSGKTTlLNal~~~i~~~---eRvItiEDt---  209 (355)
T COG4962         145 IKLTLLDLIIFGTMIRRA-AKFLRRAVGIR-------CN-ILISGGTGSGKTTLLNALSGFIDSD---ERVITIEDT---  209 (355)
T ss_pred             CCCCHHHHHHCCCCCHHH-HHHHHHHHHHC-------EE-EEEECCCCCCHHHHHHHHHHCCCCC---CEEEEEEEH---
T ss_conf             525599998738958899-99999998620-------15-9996787887999999997157976---508998123---


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf             999999861988999999740310205444453175--06999999999988569879996487567613
Q gi|254780627|r  239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE  306 (502)
Q Consensus       239 ~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk--~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l~  306 (502)
T Consensus       210 aELq--l~~ph~vrL~TR-----------~~n~Eg~gevtm~dLv--kn~LRmRPDRIiVGEVRG~Ea~d  264 (355)
T COG4962         210 AELQ--LAHPHVVRLETR-----------PPNVEGTGEVTMRDLV--KNALRMRPDRIIVGEVRGVEALD  264 (355)
T ss_pred             HHHC--CCCCCEEEEEEC-----------CCCCCCCCEEEHHHHH--HHHHHCCCCCEEEEEECCCCHHH
T ss_conf             6644--699855788634-----------8877776558899999--98753286536888860705999