HHsearch alignment for GI: 254780627 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=94.60  E-value=0.44  Score=27.75  Aligned_cols=108  Identities=17%  Similarity=0.062  Sum_probs=70.4

Q ss_pred             HHHH--HHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             6999--99999998856987999648756761363034576530211577515888999999999998864311689789
Q gi|254780627|r  276 IQHE--FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN  353 (502)
Q Consensus       276 tqee--~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~  353 (502)
T Consensus       658 t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKII----ePIQSRCa---vFRF~PL~~e~v~~RL~~-----Ia~~Egv~it  725 (863)
T PRK04132        658 YKDVYDITCHNDHSFIANGFVSHNCNYSSKII----EPIQSRCA---IFRFRPLRDEDIAKRLRY-----IAENEGLELT  725 (863)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----CHHHCCEE---EEEECCCCHHHHHHHHHH-----HHHHCCCCCC
T ss_conf             57799999877876420561798667604074----16655624---788368999999999999-----9997499767


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             899999985027888999999999999863024687788999998
Q gi|254780627|r  354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS  398 (502)
Q Consensus       354 ~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~  398 (502)
T Consensus       726 edGleAI~~~aeGDMRk---AIN~LQsaa~~~~~Vt~d~Vy~v~~  767 (863)
T PRK04132        726 EEGLQAILYVAEGDMRR---AINVLQAAAALDTKITDENVFKVAS  767 (863)
T ss_pred             HHHHHHHHHHCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf             78999999975674899---9999999986169878889999708