HHsearch alignment for GI: 254780627 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=94.60 E-value=0.44 Score=27.75 Aligned_cols=108 Identities=17% Similarity=0.062 Sum_probs=70.4
Q ss_pred HHHH--HHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6999--99999998856987999648756761363034576530211577515888999999999998864311689789
Q gi|254780627|r 276 IQHE--FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 (502)
Q Consensus 276 tqee--~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~ 353 (502)
T Consensus 658 t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKII----ePIQSRCa---vFRF~PL~~e~v~~RL~~-----Ia~~Egv~it 725 (863)
T PRK04132 658 YKDVYDITCHNDHSFIANGFVSHNCNYSSKII----EPIQSRCA---IFRFRPLRDEDIAKRLRY-----IAENEGLELT 725 (863)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC----CHHHCCEE---EEEECCCCHHHHHHHHHH-----HHHHCCCCCC
T ss_conf 57799999877876420561798667604074----16655624---788368999999999999-----9997499767
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 899999985027888999999999999863024687788999998
Q gi|254780627|r 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 (502)
Q Consensus 354 ~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~~~~l~ 398 (502)
T Consensus 726 edGleAI~~~aeGDMRk---AIN~LQsaa~~~~~Vt~d~Vy~v~~ 767 (863)
T PRK04132 726 EEGLQAILYVAEGDMRR---AINVLQAAAALDTKITDENVFKVAS 767 (863)
T ss_pred HHHHHHHHHHCCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 78999999975674899---9999999986169878889999708