HHsearch alignment for GI: 254780627 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=99.35 E-value=1.1e-10 Score=96.08 Aligned_cols=199 Identities=19% Similarity=0.206 Sum_probs=126.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH-----HHHH-HHHHCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 548986278888579999999999863068816864698889-----9999-9986198899999974031020544445
Q gi|254780627|r 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-----WRFA-SAIRDNCALNLKDSLRNIDLLLIDDMQF 270 (502)
Q Consensus 197 NPLfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~-----~~~~-~a~~~~~~~~fr~~~r~~DvLliDDiqf 270 (502)
T Consensus 41 k~lLL~GPpGvGKTT~a~~lAk~~-----g~~viElNASD~R~~~~I~~~i~~~~~~~sl~~~-----~~KlIIlDEvD~ 110 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQRTKDVIERVAGEASTSGSLFGA-----KRKLILLDEVDG 110 (403)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-----CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC-----CCEEEEEECCCC
T ss_conf 469988939987999999999984-----9985997710114789999999987606887788-----734999634344
Q ss_pred HCCCC---HHHHHHHHHHHHHHCCC-EEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 31750---69999999999885698-799964875676136303457653021157751588899999999999886431
Q gi|254780627|r 271 LQGKL---IQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 (502)
Q Consensus 271 l~gk~---tqee~f~~~n~l~~~gk-qiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~ 346 (502)
T Consensus 111 l~~~~d~gg~~al~~~i----k~s~~PiIli~Nd~~~-~--~~~~lrs~---c~~i~F~~~~~~~I~~~L~~I-----~~ 175 (403)
T PRK04195 111 IHGNADRGGVRAILEII----KKAKNPIILTANDPYD-P--SLRPLRNA---CLMIEFKRLSKRSIVPVLKRI-----CR 175 (403)
T ss_pred CCCHHHHHHHHHHHHHH----HCCCCEEEEEECCCCC-C--CHHHHHHH---HHHCCCCCCCHHHHHHHHHHH-----HH
T ss_conf 57244479999999998----5488708998268455-6--71779976---612217994999999999999-----99
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH-----------HHHHHHHHCCCC---------C
Q ss_conf 16897898999999850278889999999999998630246877889-----------999987630378---------8
Q gi|254780627|r 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA-----------DELLSHLVNTGE---------T 406 (502)
Q Consensus 347 ~~~~~l~~~v~~~la~~~~~~vR~Legal~~l~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~---------~ 406 (502)
T Consensus 176 ~Egi~i~~~aL~~Ia~~s~GDlR~---aIN~LQ~~~~~~~~~~~~~~~~~~rd~~~~if~~~~~if~~~~~~~a~~~~~~ 252 (403)
T PRK04195 176 KEGIECEEEALREIAERSGGDLRS---AINDLQAIAEGGGRITLDDVKTGERDREESIFEALDAVFKSRNYDQALEASYD 252 (403)
T ss_pred HCCCCCCHHHHHHHHHHCCCHHHH---HHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 769999999999999987973999---99999999748997756666641352314389999999756989999998852
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 75798999999999809
Q gi|254780627|r 407 KKMRIEDIQRMVAKHYN 423 (502)
Q Consensus 407 ~~i~~~~I~~~V~~~~~ 423 (502)
T Consensus 253 ~d~dpd~~~~wi~eNip 269 (403)
T PRK04195 253 VDEDPDDLIQWIDENIP 269 (403)
T ss_pred CCCCHHHHHHHHHHCCC
T ss_conf 47998999999996286